Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2219 ATGGGGAGCTTAGAACGAACGATTCTCGTCACTGGTGGGGCTGGATTCATTGGCACCCACACTGTTGTTCAGCTTCTTAAAGAAGGGTTTAGGGTTTCCATTATCGATAATCTTGATAATTCGGTTATTGAAGCTGTTGATCGGGTTAGGGAATTGGTCGGCCCTAAACTTTCACAGAAACTTGATTTTAATTTGGGAGACCTGAGAAAGAAGGAGGACATAGAGAATTTGTTTTCTAAGACGAGATTTGATGCTGTTATCCATTTTGCTGGTCTTAAAGCTGTTGGGGAGAGTGTTGCTTTCCCACGTAGATATTTCGACAATAATCTTGTTGGAACCATCAATCTCTATGAGGTTATGGCAAAATATGATTGCAAGAAGATGGTTTTCTCGTCCTCCGCAACTGTTTATGGTCAGCCTGAGAAAATACCATGTGTTGAGGATTTTGAATTAGTGGCATTGAATCCTTACGGTCGGACAAAGCTTTTCTTGGAAGAGATTGCTCGAGACATTCAAAAAGCAGAGCCCGGTTGGGGAATCATTTTGTTGAGATACTTCAACCCTGTTGGGGCTCATGAGAGTGGTCAAATTGGTGAAGATCCAAAGGGTATCCCTAACAATCTCATGCCTTACATTCAGCAAGTCGCAGTTGGTAGACTACCAGAGCTCAATGTATATGGTCATGACTATCCAACAAAAGACGGCAGCGCTGTTCGAGACTATATCCATGTTATGGACCTAGCTGATGGCCACATTGCTGCTCTTCGAAAACTTTTTACGAATGAAGATATAGGGTGCACTGCCTACAACTTGGGGACTGGACAGGGCACATCCGTGCTAGAAATGGTTGCAGCCTTTGAGAAGGCCTCGGGCAAGAAAATCCCTACGAAACTATGCCCGAGGAGGCCCGGTGATGCAACGGCGGTGTATGCATCAACGGAGAAAGCCAAGAAAGAACTCGGTTGGACGGCAAACTATGGCATAGAGGAAATGTTGGCGGAGGTCATTCTCAGGCGCCGCGCTCTTCTTTACTCCTCCGATTCCGATTCCAGATTCTCCCTCAGATTGAGACGAGAGTTGTTGAAAATCGGAGATCCTTGCGGTTCAGATCTGGGAGAAGAGGCGATGGCGCCGTCGCCGGCGGAACCGATCGGCGATTCTGGAACAGGAGATTCTCAGAGATCTATACCGACGCCGTTTCTAACGAAAACTTATCAATTGGTTGATGATCCGGCTGTGGACGATCTCATCTCGTGGAATGAAGATGGATCTACCTTCATAGTTTGGCGACCGGCTGAATTTGCTCGAGATTTACTTCCTAAATACTTTAAGCACAATAATTTCTCTAGTTTCGTCCGTCAACTCAACACTTACGGGTTCCGAAAGGTTGTGCCGGACCGATGGGAATTTGCGAACGATTGTTTCCGGAGAGGTGAGAAAGGACTTCTCCGAGACATTCAGCGGCGTAAAGTGGCGCTGTCGGTAACAACAACAACGCCGGCTACTCCAGCTGCGGTGGCTGTGCCAGTGACGGTGGCGGCGTCTCCGGCAGTGTTGGCTCACGTGATATCACCGGCGAACTCTGCAGAAGAGCAAGTTACGTCCTCGAACTCATCGCCCATGGCATTTCAGCGAAGTACGAGCTGCACCACGACGCCGGAACTTGTGAGAGAGAATGAGCGGTTAAGGAAGGAGAATATGCAACTGAGTCACGAGTTGACCCAGTTGAAAGGACTCTGTAACAGCATACTATCGCTGATGACGAATTACGCATCAGGTCACCATCACCAGTTGGAGTCGGTGAGCGTCCGAGACGGGAAGGCACTAGAGCTCTTACCGGCGAGGCAGGTGATGGAAGACGAAGGCGCCGTCAGCGACGGGGCTCATGAGGTGAGACTGAAGATGGAGGAGACGATGACAGCGGCAGCGGCGGCGGCAGGAATGACGCCGAAACTGTTCGGGGTATCGATCGGAGTGAAGCGGATGAGGAGAGAGGAAGAAGACGAGGAAGAGATGGTGGGGCAGAATCATGTACAGTCGGAAGAAGGGGAGACGGGGTCAGAGATCAAAGCTGAACCGTTGGATGAAAACTCTGAAAATCCAGAGGGATCCGCGTCGCCATGGCTTGAACTCGGAAATCAAGGCTCCTGA 2151 49.42 MGSLERTILVTGGAGFIGTHTVVQLLKEGFRVSIIDNLDNSVIEAVDRVRELVGPKLSQKLDFNLGDLRKKEDIENLFSKTRFDAVIHFAGLKAVGESVAFPRRYFDNNLVGTINLYEVMAKYDCKKMVFSSSATVYGQPEKIPCVEDFELVALNPYGRTKLFLEEIARDIQKAEPGWGIILLRYFNPVGAHESGQIGEDPKGIPNNLMPYIQQVAVGRLPELNVYGHDYPTKDGSAVRDYIHVMDLADGHIAALRKLFTNEDIGCTAYNLGTGQGTSVLEMVAAFEKASGKKIPTKLCPRRPGDATAVYASTEKAKKELGWTANYGIEEMLAEVILRRRALLYSSDSDSRFSLRLRRELLKIGDPCGSDLGEEAMAPSPAEPIGDSGTGDSQRSIPTPFLTKTYQLVDDPAVDDLISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRKVALSVTTTTPATPAAVAVPVTVAASPAVLAHVISPANSAEEQVTSSNSSPMAFQRSTSCTTTPELVRENERLRKENMQLSHELTQLKGLCNSILSLMTNYASGHHHQLESVSVRDGKALELLPARQVMEDEGAVSDGAHEVRLKMEETMTAAAAAAGMTPKLFGVSIGVKRMRREEEDEEEMVGQNHVQSEEGETGSEIKAEPLDENSENPEGSASPWLELGNQGS 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41352096 41359542 - CrPI670011_09g022190.1 Cre09g2219 508887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2219 716 Gene3D - 8 279 - -
Cre09g2219 716 PRINTS Heat shock factor (HSF) domain signature 438 450 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre09g2219 716 PRINTS Heat shock factor (HSF) domain signature 400 423 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre09g2219 716 PRINTS Heat shock factor (HSF) domain signature 451 463 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre09g2219 716 FunFam UDP-glucose 4-epimerase 8 202 - -
Cre09g2219 716 PANTHER UDP-GLUCOSE 4-EPIMERASE 6 333 - GO:0003978(PANTHER)|GO:0005829(PANTHER)|GO:0033499(PANTHER)
Cre09g2219 716 SMART hsfneu3 396 489 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre09g2219 716 MobiDBLite consensus disorder prediction 530 551 - -
Cre09g2219 716 Pfam HSF-type DNA-binding 400 489 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre09g2219 716 MobiDBLite consensus disorder prediction 663 716 - -
Cre09g2219 716 MobiDBLite consensus disorder prediction 699 716 - -
Cre09g2219 716 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 336 IPR036291 -
Cre09g2219 716 NCBIfam UDP-glucose 4-epimerase GalE 8 334 IPR005886 GO:0003978(InterPro)|GO:0006012(InterPro)
Cre09g2219 716 MobiDBLite consensus disorder prediction 663 697 - -
Cre09g2219 716 SUPERFAMILY Winged helix DNA-binding domain 397 489 IPR036390 -
Cre09g2219 716 Pfam GDP-mannose 4,6 dehydratase 9 334 IPR016040 -
Cre09g2219 716 CDD UDP_G4E_1_SDR_e 7 333 IPR005886 GO:0003978(InterPro)|GO:0006012(InterPro)
Cre09g2219 716 FunFam Heat stress transcription factor B-4 392 490 - -
Cre09g2219 716 Coils Coil 559 579 - -
Cre09g2219 716 ProSitePatterns HSF-type DNA-binding domain signature. 439 463 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre09g2219 716 Gene3D - 197 335 - -
Cre09g2219 716 MobiDBLite consensus disorder prediction 371 393 - -
Cre09g2219 716 Gene3D - 392 490 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2219 K01784 - - csv:101203400 645.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2189 Cre-Chr5:33611874 Cre09g2219 Cre-Chr9:41352096 6.60E-49 dispersed
Cre09g2219 Cre-Chr9:41352096 Cre10g0400 Cre-Chr10:2841037 7.40E-39 dispersed
Cre04g1306 Cre-Chr4:31862630 Cre09g2219 Cre-Chr9:41352096 1.10E-49 transposed
Cre04g2151 Cre-Chr4:38648435 Cre09g2219 Cre-Chr9:41352096 3.80E-64 transposed
Cre07g1520 Cre-Chr7:30469241 Cre09g2219 Cre-Chr9:41352096 7.90E-127 transposed
Cre09g1650 Cre-Chr9:34031118 Cre09g2219 Cre-Chr9:41352096 1.10E-61 transposed
Cre09g2340 Cre-Chr9:42680433 Cre09g2219 Cre-Chr9:41352096 6.60E-126 transposed
Cre05g0981 Cre-Chr5:9052955 Cre09g2219 Cre-Chr9:41352096 1.20E-58 wgd
Cre08g1547 Cre-Chr8:28120891 Cre09g2219 Cre-Chr9:41352096 3.90E-47 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0597 . 37 237 HSF AT4G17750 59.6 1.9e-62 237.3
Cre09g0695 . 57 297 HSF AT4G17750 51.4 1.8e-60 230.7
Cre08g1648 . 42 242 HSF AT4G17750 55.0 1.7e-58 224.2
Cre03g0980 . 13 192 HSF AT4G17750 50.8 7.0e-44 175.6
Cre08g1547 . 14 118 HSF AT4G17750 69.5 3.9e-39 159.8
Cre09g2219 . 368 490 HSF AT4G17750 61.8 3.9e-39 159.8
Cre05g2189 . 20 118 HSF AT4G17750 69.7 2.6e-38 157.1
Cre05g0597 . 38 242 HSF AT5G16820 57.0 5.1e-60 229.2
Cre07g0420 . 41 258 HSF AT5G16820 52.2 9.7e-59 224.9
Cre09g0695 . 58 269 HSF AT5G16820 54.2 2.4e-57 220.3
Cre08g1648 . 43 253 HSF AT5G16820 51.1 3.8e-55 213.0
Cre04g2010 . 40 222 HSF AT5G16820 50.3 5.7e-43 172.6
Cre06g1660 . 10 176 HSF AT5G16820 51.6 6.3e-42 169.1
Cre10g0400 . 13 515 HSF AT1G32330 53.0 3.1e-121 432.6
Cre05g0597 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cre09g0695 . 46 265 HSF AT1G32330 51.8 6.3e-58 222.2
Cre08g1648 . 31 223 HSF AT1G32330 54.6 3.8e-55 213.0
Cre08g1547 . 20 117 HSF AT1G32330 72.4 3.3e-38 156.8
Cre07g0420 . 41 262 HSF AT3G02990 52.2 9.1e-62 235.0
Cre05g0597 . 38 241 HSF AT3G02990 57.6 2.7e-61 233.4
Cre09g0695 . 58 280 HSF AT3G02990 52.2 1.2e-58 224.6
Cre08g1648 . 43 242 HSF AT3G02990 51.7 4.9e-55 212.6
Cre06g1660 . 10 172 HSF AT3G02990 50.3 4.0e-41 166.4
Cre05g0597 . 25 298 HSF AT2G26150 50.5 3.3e-69 259.2
Cre09g0695 . 46 264 HSF AT2G26150 54.5 2.5e-64 243.0
Cre10g0400 . 8 243 HSF AT2G26150 55.7 3.3e-61 232.6
Cre03g0980 . 5 156 HSF AT2G26150 52.0 1.1e-40 164.5
Cre02g2132 . 2 189 HSF AT4G18880 52.7 9.6e-52 201.4
Cre05g0397 . 6 353 HSF AT4G13980 56.9 1.6e-103 373.6
Cre05g0597 . 26 218 HSF AT5G43840 54.4 1.7e-55 213.4
Cre08g1648 . 31 234 HSF AT5G43840 50.5 1.2e-45 180.6
Cre09g0695 . 46 382 HSF AT3G22830 53.5 4.3e-92 335.5
Cre07g0420 . 16 350 HSF AT3G22830 50.9 2.1e-86 316.6
Cre08g1648 . 31 253 HSF AT3G22830 54.1 1.7e-64 243.8
Cre10g0400 . 29 242 HSF AT3G22830 58.9 1.2e-62 237.7
Cre09g0695 . 45 357 HSF AT3G51910 51.3 1.6e-71 266.5
Cre07g0420 . 26 322 HSF AT3G51910 52.5 2.0e-69 259.6
Cre08g1648 . 31 223 HSF AT3G51910 56.0 4.1e-54 208.8
Cre08g1648 . 31 230 HSF AT3G63350 52.5 2.8e-50 196.1
Cre02g2132 . 5 140 HSF AT3G63350 56.6 5.5e-38 155.2
Cre09g0695 . 59 251 HSF AT1G67970 50.3 4.0e-44 176.0
Cre04g1306 . 2 296 HSF AT4G36990 52.0 2.2e-71 266.2
Cre08g1547 . 17 115 HSF AT5G62020 67.7 2.0e-38 156.8
Cre09g2219 . 391 712 HSF AT4G11660 51.8 2.3e-79 293.1
Cre08g1547 . 16 121 HSF AT4G11660 71.7 4.1e-44 176.0
Cre04g1306 . 2 107 HSF AT4G11660 71.7 3.8e-42 169.5
Cre03g1504 . 20 119 HSF AT4G11660 68.0 1.1e-38 157.9
Cre10g0400 . 33 126 HSF AT4G11660 69.1 1.8e-36 150.6
Cre04g0452 . 30 237 HSF AT2G41690 53.7 1.6e-49 193.4
Cre10g1708 . 14 222 HSF AT2G41690 55.3 1.1e-47 187.2
Cre08g1547 . 9 373 HSF AT1G46264 52.2 8.5e-89 324.3
Cre05g2189 . 1 238 HSF AT1G46264 63.8 2.2e-81 299.7
Cre03g1504 . 19 200 HSF AT1G46264 51.9 3.2e-51 199.5
Cre10g0400 . 33 138 HSF AT1G46264 73.6 3.9e-41 166.0
Cre10g1708 . 21 118 HSF AT1G46264 69.4 5.8e-37 152.1
Cre02g2132 . 5 105 HSF AT1G46264 67.3 7.6e-37 151.8
Cre05g0597 . 37 237 HSF AT4G17750 59.6 1.9e-62 237.3
Cre09g0695 . 57 297 HSF AT4G17750 51.4 1.8e-60 230.7
Cre08g1648 . 42 242 HSF AT4G17750 55.0 1.7e-58 224.2
Cre03g0980 . 13 192 HSF AT4G17750 50.8 7.0e-44 175.6
Cre08g1547 . 14 118 HSF AT4G17750 69.5 3.9e-39 159.8
Cre09g2219 . 368 490 HSF AT4G17750 61.8 3.9e-39 159.8
Cre05g2189 . 20 118 HSF AT4G17750 69.7 2.6e-38 157.1
Cre05g0597 . 38 242 HSF AT5G16820 57.0 5.1e-60 229.2
Cre07g0420 . 41 258 HSF AT5G16820 52.2 9.7e-59 224.9
Cre09g0695 . 58 269 HSF AT5G16820 54.2 2.4e-57 220.3
Cre08g1648 . 43 253 HSF AT5G16820 51.1 3.8e-55 213.0
Cre04g2010 . 40 222 HSF AT5G16820 50.3 5.7e-43 172.6
Cre06g1660 . 10 176 HSF AT5G16820 51.6 6.3e-42 169.1
Cre10g0400 . 13 515 HSF AT1G32330 53.0 3.1e-121 432.6
Cre05g0597 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cre09g0695 . 46 265 HSF AT1G32330 51.8 6.3e-58 222.2
Cre08g1648 . 31 223 HSF AT1G32330 54.6 3.8e-55 213.0
Cre08g1547 . 20 117 HSF AT1G32330 72.4 3.3e-38 156.8
Cre07g0420 . 41 262 HSF AT3G02990 52.2 9.1e-62 235.0
Cre05g0597 . 38 241 HSF AT3G02990 57.6 2.7e-61 233.4
Cre09g0695 . 58 280 HSF AT3G02990 52.2 1.2e-58 224.6
Cre08g1648 . 43 242 HSF AT3G02990 51.7 4.9e-55 212.6
Cre06g1660 . 10 172 HSF AT3G02990 50.3 4.0e-41 166.4
Cre05g0597 . 25 298 HSF AT2G26150 50.5 3.3e-69 259.2
Cre09g0695 . 46 264 HSF AT2G26150 54.5 2.5e-64 243.0
Cre10g0400 . 8 243 HSF AT2G26150 55.7 3.3e-61 232.6
Cre03g0980 . 5 156 HSF AT2G26150 52.0 1.1e-40 164.5
Cre02g2132 . 2 189 HSF AT4G18880 52.7 9.6e-52 201.4
Cre05g0397 . 6 353 HSF AT4G13980 56.9 1.6e-103 373.6
Cre05g0597 . 26 218 HSF AT5G43840 54.4 1.7e-55 213.4
Cre08g1648 . 31 234 HSF AT5G43840 50.5 1.2e-45 180.6
Cre09g0695 . 46 382 HSF AT3G22830 53.5 4.3e-92 335.5
Cre07g0420 . 16 350 HSF AT3G22830 50.9 2.1e-86 316.6
Cre08g1648 . 31 253 HSF AT3G22830 54.1 1.7e-64 243.8
Cre10g0400 . 29 242 HSF AT3G22830 58.9 1.2e-62 237.7
Cre09g0695 . 45 357 HSF AT3G51910 51.3 1.6e-71 266.5
Cre07g0420 . 26 322 HSF AT3G51910 52.5 2.0e-69 259.6
Cre08g1648 . 31 223 HSF AT3G51910 56.0 4.1e-54 208.8
Cre08g1648 . 31 230 HSF AT3G63350 52.5 2.8e-50 196.1
Cre02g2132 . 5 140 HSF AT3G63350 56.6 5.5e-38 155.2
Cre09g0695 . 59 251 HSF AT1G67970 50.3 4.0e-44 176.0
Cre04g1306 . 2 296 HSF AT4G36990 52.0 2.2e-71 266.2
Cre08g1547 . 17 115 HSF AT5G62020 67.7 2.0e-38 156.8
Cre09g2219 . 391 712 HSF AT4G11660 51.8 2.3e-79 293.1
Cre08g1547 . 16 121 HSF AT4G11660 71.7 4.1e-44 176.0
Cre04g1306 . 2 107 HSF AT4G11660 71.7 3.8e-42 169.5
Cre03g1504 . 20 119 HSF AT4G11660 68.0 1.1e-38 157.9
Cre10g0400 . 33 126 HSF AT4G11660 69.1 1.8e-36 150.6
Cre04g0452 . 30 237 HSF AT2G41690 53.7 1.6e-49 193.4
Cre10g1708 . 14 222 HSF AT2G41690 55.3 1.1e-47 187.2
Cre08g1547 . 9 373 HSF AT1G46264 52.2 8.5e-89 324.3
Cre05g2189 . 1 238 HSF AT1G46264 63.8 2.2e-81 299.7
Cre03g1504 . 19 200 HSF AT1G46264 51.9 3.2e-51 199.5
Cre10g0400 . 33 138 HSF AT1G46264 73.6 3.9e-41 166.0
Cre10g1708 . 21 118 HSF AT1G46264 69.4 5.8e-37 152.1
Cre02g2132 . 5 105 HSF AT1G46264 67.3 7.6e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004116 2 2 2 0 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54437 PF16363 GDP_Man_Dehyd 2.80E-64 CL0063 Cre TF