Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2225 ATGAACCTCCAAACCCGAAAAACACTCAAAAAACCACTTTCTGATCTCGATTGCGCAGATTCTGGAGCTGATCTGTTGTTGAACATGGTGGCTAAGGGTTCGCCGGATTGGCTTCCCTCAGGCTGGACTGTGCAGTATAAAGTCCAGAAGACGGGCCGGAAAATTAGGTTCTATACAAACTTGGAGACTGGAAAAAGCTTTTATTATAAGGATGATGTTATTGGCTACATTAAAAGCACTCAGTCTCAAAAGTCTCAACCAACTTCGAGGCGCATCAAAACTCATTTAGGAAATAGTCCAGTGCAACTCACGGTGAAAACAAATGAACGCCCCGAATGGTTGCCTGCTGGCTGGAAAGTGGAGGCAAGAACACGAATGAGTGGTTCAAATGTTGGAGCTGTTTACAAGTGTTACATTGATCCAGTGACGGACAACAGATTTTATTCTAAGCCAGAGGTATTTCGATATCTCAGAACTGTAAAGAACAAATTGTGCACATTGAAAGAGAGAAGGACAAGCAATGACACAAACTCTAGGAGCCAAGTTGTTATTGAGCATTATAAAGATGAAGATTTGCCGCCTGGATGGATAAAGGAAATCAAGATCAAAGAAAAAGCGGATGGCATTAGGAAGGACCCGTTTTACATAGATCCAAAATCTGGATACATATTCCGCTCTAAGAAGGATGTTTTCCGCTATCTTGAGACTGGAGAGATCAGTAGACATGCATTTAAACCAAAGGATGGGGGCGACGATGATCAAGAGTTGATAAATGACAAAAAATCACGACCTTCTACTGTTAGAGGACAGAAATTGGAGCACTCTGCAGCAACCCCACAACCTCTTGCAGGTGAGGAAATGCCAACAGGGAGACGTTCAAAACATCCAAGAGTCCATAATCAACAGTTGAAGCAATGTCGGAACGTGTCTTCTGAACTGAAAGATGCTTCAGTTCCTCCTGTTGAAACTGTTGAAGTGCTTGTTTCATCTCAAGAAGTGGTCAGGGAGTCTACTGAAATTGAAGAGAAAAGTCATGGTTCAGCATCTCCTAAAGCTGATCATCTAGAAGGTAACGAAACTGAAAGAGTATCTTCCGATAACGTACCAGTTTCAACTTGTGCATCTGAGCCAGACCAAGAGAAGGCATTGCCAAAAGCTGAAAAGCTCGACAGTAATAAAATTGATATAGTAACTCCTGATAACAGTCCACTTCCAACCACTGCATCAAAGTTGGAGCACGAGAAGATTGCAATCAGTAATACGATGGAAAGCGGTGACAATTGGGAAAAGACAAAGACGAGGAAGTTCAAGAAGAAGAAAGACATCAACTTGCCTCGGAGGTCTTCAAAACGACTCGCTGGTCTCGAACCAGAGTTGGTGCCTAAAGCAGAGGCAAAAGAAGTTCCTCAAGCTTCAAATAGAAATAGTTTCACTGAAGTTAGTCCAGATCCTGCCCTAAATGTGAAAGCAGATGCAGATGTTCACAATGCAGATAAAGTATCCCAGCAGCTCAATGTGAGGTTGGAAAGAGACAATGAAGATCATGTACCTAATCTCAAGGACACACCCTTGCATGAAAATCCTTCCAATAAGAGGAAAACTCCTCTTGCTTGCGGCCTAGATGTCCCCGAAGAGAAAATACAAAAAGTAGAAACTGAGAAGAAGAATGATGGAAAAAACGAAGCAGAGCTGAATGTTCCGATTGCTGATTTTTGGTCCGACCCATGCTTGGAATTTGCAATCAAGACTCTTACAGGTGCATTGCCAGTGGAGAATGCCACTGCCACCGATGAGCCAGTTTCTAATCCTACAGTTAACTTCCTGCAAGGACAGAGCTCAGTAAAAAATGGGCCGGGAAGTTGCATGAATAAGAGAACTCAAGGGAACAAAAGATTCAAGAACAAGAAAGAGCTCACTTCAAATCGTCAATCTCCAAGTATTAATGGGCTAAAACCTGAACTGGCATCAAATATAATTTCCTTTGAACAAGCAAACCCAAACCATCATTCAAATGAAGCTGTTCTAGCTTTTAATTTATCAGACGGTAGAATACATGGACAGCCACAAAGTACGAATGAACAATATAGAACATCTTGCCAAATCTTGCCACCCAGTGAACTGCATCATCTCCCGCCCGAGGTAAATTCTGAGCGTTTTAACAGGACCAATGCATGCCATGAGAGCAACAAAATGGTGCTCGATGATCAGCATCAAATGCTTCAAACGAAGGGCCATATGGCATCAGAAACTCCATTATCCTTTCCATTTGGGGATTCCTGGGCAGATCCATGCTTGGATTTTGCATTCAAGACTCTCACAGGTGCAATACCAATAGCCGATAGTCTGGAAATTCAAAGCTTCTTTGAGGAACGACTCGAGTCCTCTCGCACCCAAAAAGACAGTAGCCCAGCATTGCCAGATTTTGGATCCCCTAACCTCTTCCAAAACGATATATCATCCCACTTCGACGGACCCGAAAAATCTGTTTCAGGACAGCACTTGAGTTTAGATCCTCAGCTGAGTTTGGGGAACGTGAGTCTACCAAGCTGCAGTGGATTCACTTCTCAACAGCAGTCTTCCGTAGATAGAAACAGATCTTTTAGGGGAAGGTGA 2613 42.98 MNLQTRKTLKKPLSDLDCADSGADLLLNMVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLETGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTHLGNSPVQLTVKTNERPEWLPAGWKVEARTRMSGSNVGAVYKCYIDPVTDNRFYSKPEVFRYLRTVKNKLCTLKERRTSNDTNSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDPFYIDPKSGYIFRSKKDVFRYLETGEISRHAFKPKDGGDDDQELINDKKSRPSTVRGQKLEHSAATPQPLAGEEMPTGRRSKHPRVHNQQLKQCRNVSSELKDASVPPVETVEVLVSSQEVVRESTEIEEKSHGSASPKADHLEGNETERVSSDNVPVSTCASEPDQEKALPKAEKLDSNKIDIVTPDNSPLPTTASKLEHEKIAISNTMESGDNWEKTKTRKFKKKKDINLPRRSSKRLAGLEPELVPKAEAKEVPQASNRNSFTEVSPDPALNVKADADVHNADKVSQQLNVRLERDNEDHVPNLKDTPLHENPSNKRKTPLACGLDVPEEKIQKVETEKKNDGKNEAELNVPIADFWSDPCLEFAIKTLTGALPVENATATDEPVSNPTVNFLQGQSSVKNGPGSCMNKRTQGNKRFKNKKELTSNRQSPSINGLKPELASNIISFEQANPNHHSNEAVLAFNLSDGRIHGQPQSTNEQYRTSCQILPPSELHHLPPEVNSERFNRTNACHESNKMVLDDQHQMLQTKGHMASETPLSFPFGDSWADPCLDFAFKTLTGAIPIADSLEIQSFFEERLESSRTQKDSSPALPDFGSPNLFQNDISSHFDGPEKSVSGQHLSLDPQLSLGNVSLPSCSGFTSQQQSSVDRNRSFRGR 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41393594 41401716 - CrPI670011_09g022250.1 Cre09g2225 508893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2225 870 Gene3D - 109 167 - -
Cre09g2225 870 MobiDBLite consensus disorder prediction 850 870 - -
Cre09g2225 870 MobiDBLite consensus disorder prediction 425 483 - -
Cre09g2225 870 MobiDBLite consensus disorder prediction 610 650 - -
Cre09g2225 870 SUPERFAMILY DNA-binding domain 109 162 IPR016177 GO:0003677(InterPro)
Cre09g2225 870 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 104 181 IPR001739 GO:0003677(InterPro)
Cre09g2225 870 MobiDBLite consensus disorder prediction 850 864 - -
Cre09g2225 870 MobiDBLite consensus disorder prediction 509 536 - -
Cre09g2225 870 Gene3D - 168 281 - -
Cre09g2225 870 MobiDBLite consensus disorder prediction 332 386 - -
Cre09g2225 870 MobiDBLite consensus disorder prediction 242 268 - -
Cre09g2225 870 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 182 254 IPR001739 GO:0003677(InterPro)
Cre09g2225 870 MobiDBLite consensus disorder prediction 815 835 - -
Cre09g2225 870 Gene3D - 33 102 - -
Cre09g2225 870 MobiDBLite consensus disorder prediction 335 361 - -
Cre09g2225 870 MobiDBLite consensus disorder prediction 242 319 - -
Cre09g2225 870 MobiDBLite consensus disorder prediction 509 528 - -
Cre09g2225 870 PANTHER OS04G0193200 PROTEIN 99 858 IPR038945 -
Cre09g2225 870 MobiDBLite consensus disorder prediction 610 627 - -
Cre09g2225 870 SUPERFAMILY DNA-binding domain 36 82 IPR016177 GO:0003677(InterPro)
Cre09g2225 870 Pfam Methyl-CpG binding domain 191 237 IPR001739 GO:0003677(InterPro)
Cre09g2225 870 Pfam Methyl-CpG binding domain 107 162 IPR001739 GO:0003677(InterPro)
Cre09g2225 870 SUPERFAMILY DNA-binding domain 186 239 IPR016177 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2225 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0985 Cre-Chr5:9083845 Cre09g2225 Cre-Chr9:41393594 2.00E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g651 . . Bda05g00063 . Bpe03g00292 . . . Cmo16g00136 Cmo18g01264 . . . . Sed01g3910 . Cpe14g00111 Bhi01g01334 Tan01g0265 Cmetu09g1530 . Hepe07g0168 Mch10g0165 . Cla01g00286 Cam01g0298 Cec01g0291 Cco01g0304 Clacu01g0297 Cmu01g0284 Cre09g2225 . . . . Lsi05g01239 Csa05g00308 Chy09g01198 . Blo07g00416 . . . . . . . . . . Cma16g00131 Cma18g01241 . Car18g01146 Cpe09g00096 . Bhi12g00219 . . . . . . Cla05g00869 Cam05g0957 Cec05g0962 Cco05g0962 Clacu05g0943 Cmu05g0901 Cre05g0985 . Csa03g01700 Chy06g00936 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010700 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 31