Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2239 ATGTTGAAGTTTCCGCGGCGGAAACGATCGCCGGCGGCAACAGAGGAGACTCCAAAAAATGCAACGGTTATTGACAACGAGGAGACCGCGGCGGCGAAGGCGGTGGTGTGTGTTAGCGGCATGAGTTGCTCTGCTTGCGCTGTGTCAGTTGAGAATTCCATCAAACACCTTCCAGGCATTCTCGATGCGGCCGTCGATTTCTTGAACGATAAGGCTCAAATCCTCTATCTCCCCAATCTCATCGACGTAGAGGCAATACTTAAAGCAATTGAAAATGCTGGATTTCAAGCTACAATATCAAACGATGGGACCAATCATCGATCGAGAGAAGTATGTCGAATCCGAGTAAATGGGATGGGGTGCAATTCTTGCTCTTCCATGGTAGAGTCAGTTTTGGAAGCAATGTATGGAGTACAAAAGACTCACATTGCTTTGTTCAAAGAGGAAGCAGAAGTTCACTATGATCCAAAGGTTGTTAATTGCAATCAGTTCATTGTAGCCATACAAGATATTGGATTTGAAGCCTTACCTATAACCATTGGTGAACACATTAACAAGATTGAGTTAAAGATTGATGGTATGCACAATGAAAACTCAACAACAAAAGTTAAAGAATCACTCAAATCGGTCCCGGGAATTGACGATATCAATATTGATACGACATTAAGCAAAGTTACCATCTCCTATAGGCCTGATATAACAGGACCTAGAACTTTCATTGACGTCCTCGAGTCGATCAAATCCGAGCATTTCAAGGTGACAATATATCCTGAAGAAAGAGGACGAGAAACTCGTAAGGAGAAAGAAATTAAGCAACATTATAAGTACCTTCTATGGAGCTCTGCTCTTTCTATACCTGTTTTCTTAACTTCAATGGTATTCATGTATATACCTGGAATCAAGCAGACTTTAGATATCAAAGTTGTCAATATGATGAATGTTGGACATATAATCAGGTGGAATTTGTCGACTCCGGTGCAGTTCGTCATAGGTTCAAGATTCTACATCGGATCATACAAAGCATTGCGTCGCGGTTCTGCTAACATGGATGTATTGGTTACTTTGGGAACAAATGCAGCTTATTTCTATTCTGTTTATATAGTGTTAAGAGCAGCTACATCTCCTACTTTCAATGGTACAGATTTCTTTGAAACTAGTTCGATGTTGATTACATTCATTCTACTTGGTAAGTATTTGGAGGTTTTAGCAAAAGGAAAGACCTCTGAGGCCATTGCCAAGCTTAAACACTTGGCTCCCGAGACGGCCACACTCTTGACTTTAGATGGCCATGGAAATGTGATCAGTGAAATGGAAATCAGTAGTGAGTTGATTCAAAAGAATGATGTAATCAAGATTACGCCGGGTGCGAGAGTAGCTTCTGATGGTCTCGTAGTATGGGGCGAAAGTCATGTTAACGAGAGTATGATCACAGGAGAAGCGAAACCAGTAACGAAAAGGACCGGCGACAAGGTGATAGGAGGAACTGTGAATGAAAATGGGGTATTGCATATAAAGGCAACACATGTTGGATCAGAGAGTTCTTTAGCGCAAATCGTTCGACTTGTCGAATCGTCCCAGTTGGCAAAAGCTCCTATTCAGAAATTTGCAGATCATATCTCCAAGTATTTTGTGCCTCTGGTAATTTTACTTTCTTTTCTCACTTGGATTGCCTGGTTTTTAGCTGGAAAGTTACATCTCTATCCTAAGTCATGGTTGCCTTCTTCAATGGCCAGTTTTGAGCTTGCTCTCCAATTTGGGATTTCTGTTATGGTCATAGCTTGCCCTTGTGCTCTCGGCCTTGCCACCCCGACCGCCGTGATGGTCGGTACCGGAGTCGGTGCATCTCAAGGTGTACTAATAAAAGGCGGTCAAGCATTAGAATTTGCTCATAAGGTGAGTTGCATTGTGTTTGATAAGACAGGAACTCTAACAATTGGAAAGCCAGTGGTTGTAAATGTAAAACTTATAGACACAATAGTACTTGAAGAACTGCTTGAACTCACTGCTGCAACCGAGGTTAACAGTGAGCACCCAGTAGCCAAGGCCATTGTTGAATATGCCAAACAGTTCAAGAAAGAACAGAACCCCATTTGGTCAGAAGTTCAAGAATTCATATCCATTCCTGGCCATGGAGTAGAAGCCATAGTAATGAACAAGAAAATAATGGTTGGAAACAAGAGCTTGATGATGAATAATGACATTGAAATCCCGGGGGAAGCAGAAAGCTTCCTTGTCGACGCCGAAGGTATGGCACAAACAGCGGTTTTGGTGGCCATAGATCGAATGGTGTCGGGAGTTATCGCAGTGTCGGATCCATTGAAACCAGGTGCCAAAGAAGTTATTTCCATTCTCAAGTCTATGGAAGTGAAGAGCATCATGGTAACAGGTGACAATTGGGGTACTGCAAATTCCATTGCCAAAGAAGTTGGCATTGAAACAGTCATTGCAGAAGCCAAACCTCAGCAGAAAGCAGAGGAAGTGAAGAATCTTCAGACAGCGGGCCACACGGTGGCGATGGTCGGAGACGGGATCAACGACTCGCCTGCCCTAGTAGCAGCAGATGTCGGGATGGCGATTGGAGCCGGCACGGACATTGCCATTGAGGCAGCAGACATTGTTCTAATGAAAAATGACTTGCAAGATGTTATAACTGCCATTCATCTTTCAAGGAAAACCTTTGCTAGAATCCGTTTGAATTACATTTGGGCTTTAGGTTATAATCTTCTTGCCATACCGATTGCGGGGGGCGTCTTGTTCCCTTCGACTCGGTTTCGGTTACCGCCGTGGATCGCTGGAGCCGCCATGGCAGCTTCTTCTGTTAGTGTGGTCTGCAGTTCTTTGATGTTGAAGAAATACAAGAGACCTAAGAAGCTTGATGAAGTTGAGATTCAAATGAATGGAATAGTGGTTGAATGA 2916 43.28 MLKFPRRKRSPAATEETPKNATVIDNEETAAAKAVVCVSGMSCSACAVSVENSIKHLPGILDAAVDFLNDKAQILYLPNLIDVEAILKAIENAGFQATISNDGTNHRSREVCRIRVNGMGCNSCSSMVESVLEAMYGVQKTHIALFKEEAEVHYDPKVVNCNQFIVAIQDIGFEALPITIGEHINKIELKIDGMHNENSTTKVKESLKSVPGIDDINIDTTLSKVTISYRPDITGPRTFIDVLESIKSEHFKVTIYPEERGRETRKEKEIKQHYKYLLWSSALSIPVFLTSMVFMYIPGIKQTLDIKVVNMMNVGHIIRWNLSTPVQFVIGSRFYIGSYKALRRGSANMDVLVTLGTNAAYFYSVYIVLRAATSPTFNGTDFFETSSMLITFILLGKYLEVLAKGKTSEAIAKLKHLAPETATLLTLDGHGNVISEMEISSELIQKNDVIKITPGARVASDGLVVWGESHVNESMITGEAKPVTKRTGDKVIGGTVNENGVLHIKATHVGSESSLAQIVRLVESSQLAKAPIQKFADHISKYFVPLVILLSFLTWIAWFLAGKLHLYPKSWLPSSMASFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALEFAHKVSCIVFDKTGTLTIGKPVVVNVKLIDTIVLEELLELTAATEVNSEHPVAKAIVEYAKQFKKEQNPIWSEVQEFISIPGHGVEAIVMNKKIMVGNKSLMMNNDIEIPGEAESFLVDAEGMAQTAVLVAIDRMVSGVIAVSDPLKPGAKEVISILKSMEVKSIMVTGDNWGTANSIAKEVGIETVIAEAKPQQKAEEVKNLQTAGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKNDLQDVITAIHLSRKTFARIRLNYIWALGYNLLAIPIAGGVLFPSTRFRLPPWIAGAAMAASSVSVVCSSLMLKKYKRPKKLDEVEIQMNGIVVE 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41571191 41578586 + CrPI670011_09g022390.1 Cre09g2239 508907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2239 971 SUPERFAMILY Calcium ATPase, transmembrane domain M 381 912 IPR023298 -
Cre09g2239 971 Pfam Heavy-metal-associated domain 37 95 IPR006121 GO:0046872(InterPro)
Cre09g2239 971 Pfam Heavy-metal-associated domain 114 174 IPR006121 GO:0046872(InterPro)
Cre09g2239 971 Pfam Heavy-metal-associated domain 189 246 IPR006121 GO:0046872(InterPro)
Cre09g2239 971 Gene3D - 186 255 - -
Cre09g2239 971 ProSiteProfiles Heavy-metal-associated domain profile. 32 98 IPR006121 GO:0046872(InterPro)
Cre09g2239 971 Pfam haloacid dehalogenase-like hydrolase 633 854 - -
Cre09g2239 971 ProSitePatterns Heavy-metal-associated domain. 116 146 IPR017969 GO:0046872(InterPro)
Cre09g2239 971 FunFam ATPase copper transporting beta 106 178 - -
Cre09g2239 971 Gene3D - 404 526 - -
Cre09g2239 971 PRINTS P-type cation-transporting ATPase superfamily signature 840 859 - -
Cre09g2239 971 PRINTS P-type cation-transporting ATPase superfamily signature 472 486 - -
Cre09g2239 971 PRINTS P-type cation-transporting ATPase superfamily signature 863 875 - -
Cre09g2239 971 PRINTS P-type cation-transporting ATPase superfamily signature 765 776 - -
Cre09g2239 971 PRINTS P-type cation-transporting ATPase superfamily signature 636 650 - -
Cre09g2239 971 PRINTS P-type cation-transporting ATPase superfamily signature 787 797 - -
Cre09g2239 971 CDD HMA 38 98 IPR006121 GO:0046872(InterPro)
Cre09g2239 971 SFLD p-type atpase 618 892 IPR044492 -
Cre09g2239 971 CDD P-type_ATPase_Cu-like 277 936 - -
Cre09g2239 971 ProSiteProfiles Heavy-metal-associated domain profile. 110 176 IPR006121 GO:0046872(InterPro)
Cre09g2239 971 FunFam Probable copper-transporting ATPase HMA5 747 897 - -
Cre09g2239 971 FunFam Copper-transporting ATPase HMA5 31 102 - -
Cre09g2239 971 Gene3D - 109 177 - -
Cre09g2239 971 FunFam Copper-transporting ATPase 1, putative 404 526 - -
Cre09g2239 971 Pfam E1-E2 ATPase 417 614 - -
Cre09g2239 971 NCBIfam heavy metal translocating P-type ATPase 349 949 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cre09g2239 971 SUPERFAMILY HAD-like 635 946 IPR036412 -
Cre09g2239 971 ProSiteProfiles Heavy-metal-associated domain profile. 185 251 IPR006121 GO:0046872(InterPro)
Cre09g2239 971 SFLD C1.7: P-type atpase like 618 892 - -
Cre09g2239 971 CDD HMA 114 175 IPR006121 GO:0046872(InterPro)
Cre09g2239 971 CDD HMA 188 254 IPR006121 GO:0046872(InterPro)
Cre09g2239 971 ProSitePatterns E1-E2 ATPases phosphorylation site. 638 644 IPR018303 -
Cre09g2239 971 Gene3D - 721 771 IPR023299 GO:0000166(InterPro)
Cre09g2239 971 Gene3D - 643 720 IPR023299 GO:0000166(InterPro)
Cre09g2239 971 SUPERFAMILY Calcium ATPase, transduction domain A 436 522 IPR008250 -
Cre09g2239 971 SUPERFAMILY HMA, heavy metal-associated domain 181 247 IPR036163 GO:0046872(InterPro)
Cre09g2239 971 ProSitePatterns Heavy-metal-associated domain. 38 67 IPR017969 GO:0046872(InterPro)
Cre09g2239 971 Gene3D - 31 105 - -
Cre09g2239 971 NCBIfam HAD-IC family P-type ATPase 389 922 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre09g2239 971 Gene3D - 603 897 IPR023214 -
Cre09g2239 971 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 20 964 - -
Cre09g2239 971 SUPERFAMILY HMA, heavy metal-associated domain 33 102 IPR036163 GO:0046872(InterPro)
Cre09g2239 971 PRINTS H+-transporting ATPase (proton pump) signature 871 896 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre09g2239 971 PRINTS H+-transporting ATPase (proton pump) signature 840 856 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre09g2239 971 SUPERFAMILY HMA, heavy metal-associated domain 110 181 IPR036163 GO:0046872(InterPro)
Cre09g2239 971 NCBIfam copper ion binding protein 114 175 IPR006122 GO:0005507(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0562 Cre-Chr4:22188134 Cre09g2239 Cre-Chr9:41571191 0.00E+00 dispersed
Cre04g2168 Cre-Chr4:38809297 Cre09g2239 Cre-Chr9:41571191 7.60E-231 dispersed
Cre06g2228 Cre-Chr6:30154281 Cre09g2239 Cre-Chr9:41571191 6.40E-67 dispersed
Cre09g2239 Cre-Chr9:41571191 Cre10g1092 Cre-Chr10:21557644 6.20E-105 dispersed
Cre09g2239 Cre-Chr9:41571191 Cre02g1545 Cre-Chr2:27832144 6.00E-241 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2239 K17686 - csv:101220448 1744.55