Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2242 ATGGATGGGAGGGAAGGCATGGCATTGTCTGGTGGCTCTGCTTCTTATTACATACATAGGGGAGGAGGAGTTGGTGGCTCTGGATCAGGGCTGCCTACGGCTGGATCACATGCCTCCCCTGTATTCCGGCCGATGGCTAACCAGGGTGTTTTGTCTCACTCAAATCTCAGAGGCAACTCAGTTGGATCAACATATGCTGTTGAGCCATCACATTCGAATTATCTTCGTGGGATGGGTATCAATGTCTCAGCTGGAGTGAACTCTAGTGAACCTGTAAAGAAGAAGAGAGGGAGACCCCGGAAATATGCCCCAGATGGGCAGGTCTCATTGGGTTTGTCTCCCATGTCTGCTGGTTCTAAGCTCACTCCGGGTTCGAATTCGTCAACCCCCAGACGACGACGAGGGCGGCCACCTGGTTCTGGAAGGAAACAACAATTAGCTCTCCTTGGTGATTGGATGAACAATTCAGCTGGACTAGCCTTTGCTCCACATGTTATTCACGTTGGAGCTGGAGAAGACATTGTAGCAAAAGTGTTGTCATTCGCACAGCAGAGGCCAAGGGCTCTTTGCATATTGTCTGGCAATGGGACTGTTTCTTCTGTAACACTACGTCAGCCTGCATCTACTGGCGTGAGCGTCACTTACGAGGGTCATTTCCAGATATTGTGCTTATCTGGTTCTTACTTGGTGGCTGAAGATGGTAGTCCTCGAAGTAGGACAGGAGGTATTAGTGTTTCTCTCTCTAGTCCTGATGGTCATGTCATTGGTGGCGGTGTTGCCGTTCTTATGGCAGCTGGCCCTGTTCAGGTAGTTGTATGTAGTTTTGTTTATGGTGCAAAGATAAAAAACAAGCAGGTGGCTGGTTCGAAAAGCAATGATGGTTCTGGAAATGAGCACCACGACAATTTGGTTTCGCCCACGAGTGCCCCATCTGCCCAAACGTACAATCCATCTCCAATTGGTGTTTGGCCTGGTTCCCGTTCAGTCGATATTGATGCTAACATATGGTATGAGACTTCATTTCAAGTTTCTCAAGTCAATGTTGATTTTATTGGGCAGAGTTTCTGGTTTTTGGAGGGGTATCTCATTCCAATTTCCTTTTCAAGGGCTTCTGCTCGAGATGAAAAGGATTATATGGTGGTGTTGGTTAGAAACAGAACTGGAATGGAATAG 1173 47.66 MDGREGMALSGGSASYYIHRGGGVGGSGSGLPTAGSHASPVFRPMANQGVLSHSNLRGNSVGSTYAVEPSHSNYLRGMGINVSAGVNSSEPVKKKRGRPRKYAPDGQVSLGLSPMSAGSKLTPGSNSSTPRRRRGRPPGSGRKQQLALLGDWMNNSAGLAFAPHVIHVGAGEDIVAKVLSFAQQRPRALCILSGNGTVSSVTLRQPASTGVSVTYEGHFQILCLSGSYLVAEDGSPRSRTGGISVSLSSPDGHVIGGGVAVLMAAGPVQVVVCSFVYGAKIKNKQVAGSKSNDGSGNEHHDNLVSPTSAPSAQTYNPSPIGVWPGSRSVDIDANIWYETSFQVSQVNVDFIGQSFWFLEGYLIPISFSRASARDEKDYMVVLVRNRTGME 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41595614 41601818 - CrPI670011_09g022420.1 Cre09g2242 508910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2242 390 ProSiteProfiles PPC domain profile profile. 158 301 IPR005175 -
Cre09g2242 390 MobiDBLite consensus disorder prediction 85 143 - -
Cre09g2242 390 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 276 - -
Cre09g2242 390 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 73 302 IPR039605 GO:0003680(InterPro)
Cre09g2242 390 Gene3D - 163 290 - -
Cre09g2242 390 MobiDBLite consensus disorder prediction 112 133 - -
Cre09g2242 390 CDD DUF296 163 275 IPR005175 -
Cre09g2242 390 MobiDBLite consensus disorder prediction 286 317 - -
Cre09g2242 390 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 275 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1154 Cre-Chr9:12747652 Cre09g2242 Cre-Chr9:41595614 8.50E-39 dispersed
Cre09g2242 Cre-Chr9:41595614 Cre10g0427 Cre-Chr10:3144026 2.60E-46 dispersed
Cre06g1146 Cre-Chr6:5322030 Cre09g2242 Cre-Chr9:41595614 1.10E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2242 - - - 0.0