Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2244 ATGGGGAAAGGAAGACCAAGAGCTGTGGAAAAGGGGGTAATAGGGCAGAATTTGAGTGTATGTTCATCAACGTCATTGAATATACCATCTGGGCCTGTGTATCATCCAACTGAAGATGAATTTAGAGACCCATTGGAGTATATATATAAGATCAGACCCGAGGCTGAGCCGTACGGGATTTGTAGGATAGTGCCACCCAAGAACTGGAAACCTCCATTTGCATTGAGATTAGATTCTTTTACATTTCCCACAAAAACGCAGGCCATTCATCAATTGCAGGTTAGACCTGCTGCCTGTGATTCAGAGACTTTTGAGCTTGAATATAATAGGTTTTTGGACGATCATTTTGGCAAAAAGATGAAGAAGAAGGTGGTTTTTGAGGGAGAGGAGTTGGATTTGTGCAAGTTATTTAATGCAGTGAAGCGTTATGGTGGGTATGATAAAGTTGTTAAGGAGAAGAGGTGGGGTGAGGTTTTTAGGTTTGTTAGATCAACAAGGAAGATTTCAGAATGTGCTAAGCATGTGCTGTGTCAATTGTACCGAGAACATCTCTATGATTATGAGAACTATTATAATAAGTTGAATAAGGATGTTACGAAGAGTTCAAAAAGGAAAATGCAAGATGAGAAGCTTAGTGAATGCTTGGCCGGATTTTCAACCTCTAAAAGGAGGCGGCAGAACACTGACGATGGCAGAGTCAGCGTCTCAAAGTTAAAAGAAGAAGAGAATAATGATCAGATTTGTGAGCAATGTAAAAGTGGATTGCATGGTGAAGTGATGCTTTTATGCGATAGGTGTGACAAGGGGTGGCACATATACTGTCTCTCACCTCCCCTAAAGCAAGTCCCACCTGGGAACTGGTATTGTTTAGATTGCTTGAATTCAGAGAAGGACAGTTTTGGATTTGTGCCTGGTAAATGCTTCTCCCTGGAAGCATTTAAGCGTATGGATTATAGGGCCAAGAAGAAATGGTTTGGCTCAGGGTCTGCTTCTAGAATGCAAATTGAGAAGAAGTTTTGGGAAATTGTGGAAGGTTCATTTGGTGAGGTTGAAGTTAAATATGGCAGTGACTTGGACACTTCGGTTTATGGCAGTGGCTTTCCTCGTGAAAATTTTCAGAGACCAGAATCAATTGATGCTAAGGAGTGGGATGAATACTGCAATAGTCCGTGGAATCTCAATAACTTGCCCAAATTGAAAGGGTCCATGCTTAGAGCCATTCGTCACAATATTACTGGTGTTATGGTGCCCTGGTTGTATATTGGGATGCTATTTTCATCGTTCTGCTGGCATTTTGAAGATCACTGTTTCTATTCAATGAATTACCTACACTGGGGTGACCCAAAATGCTGGTATAGTGTACCTGGTAGTGAAGCTACGGCTTTTGAGAAGGTTATGCGGAACAACCTTCCTGATCTTTTTGATGCACAACCTGATTTGCTTTTTCAACTTGTCACCATGTTGAATCCATCCGTCTTACAAGAAAATGGCGTACCCGTTTATACTGTACAACAGGAGCCTGGAAATTTTGTTGTGACCTTCCCTAGATCTTTCCATGGGGGTTTTAATCTTGGATTAAATTGTGCTGAGGCTGTAAATTTTGCTCCTGCTGACTGGATGCCTTATGGTGGGTTTGGAGAAGAACTGTATCAGCTTTATCACAAACCTGCTGTTTTTTCTCACGAGGAGCTTATCTGTGTGATAGCAAAGATGGACTGCAGTAACCGAGTTTCTCCTTACCTGAAGAAAGAGTTACTTAGGATTTATTCTAAGGAGAAAAGTTTGAGAGAACAACTTTGGAAAAATGGTGTAATCAGATCTTCTCCGTTGCCTCCTCGAAAGTGTCCTGAATATATCAGTACCGAGGAGGATCCAACATGCGTTATATGCAAGAAGTATCTTTATCTTTCAGCTATAGGTTGCCGTTGCAGGAGATCTGCTTTTGTATGTTTGGAGCACTGGCAACACCTTTGTGAATGCAAGTACAGCAGGCGGCGCCTTCTGTATCGTTATACACTTGCTGAACTATATGATTTGGTTGGTATAATTGATAGATGTGGTTCTGGGGATACAACTGAAAGTAAGGATTTGCGACAAGCTGGCTTATGCTACACTGAACGATGTACTTTGACAAAAAAGGTGAAAGGTGGTCGTGTCACTCTGTCTCAACTTGCAGAAAAATGGTTACTGCATTCAAGTAAGGTTCTTCAAGATCCTTTCTCGAGTGAGGCATGTGTTAAGGCTTTGAGAGAAGCTGAGCAATTTCTTTGGGCTGGTCATGACATGGATAATGTCCGTGATGTTGTAAGAAACTTGGATGAGACTCAAAAGTGGGTTCGACGCATTGAAGATTCCCTTTCTAAAATTGAAGCGTGGTCATGTGATCATTCTGGAAGTTTAGAGAAAATTTGCTTGGATCATGTAAACAATTTATTGAGTCTACCCCCAATATCATGTAACCATCCTGGGTATCTTAAGTTGAAGGATTATGTTGAAGAAGCAAAGATTTTAATACAAGATATTGACAATGCCTTATCAACATGCCCTGATGTTTCTGAATGGGAAATTTTGTACTCAAGAGTGTGTGCCTTTCCAATCCATATAGAAGAAAGTGAGAAGTTATTAGAAAACATATCAATAGCGAAGTCTTGCCTAGAAAGTGTCAGAGAAATTTTGGAGAAACAGCCTGCTGCTTTTGAGCTTGAGATTCTTTACAAATTGAAGTCTAAGATCTTGGAGCTTGGAATGCAGCTTCCAGAGACAGAAATGGTGCTGGATTTAACAAGGCAAGCTGAACTACATCGTTCTAGATGTGCAGAAATTATGAATGGTCCCATGAACTTGAAGACTGTCGAACTTTTCCTTCAAGAATCTAACGGTTTTGCTGTTAATATACCTGAACTGAAGCTTATAAGACAGTATCATGATGATGTTGTTAAATGGAATGCTCGTCTTAATGCTGTTATGGTTAATGTTCATGAACGAGAGGATCAACATAATGTAATAGAAGAATTAAATTGCATTCTAAGAGATGGATTATCATTGAAAATAAAAGTTGATGATGTACCTATAATTGAGGTTGAGTTGAAGAAGGCTTCTGTCAGGGAAAAAGCTCAAAAGTTACGCAATACCAAGGTTACTATGGAATTCATGCAGAAACTGATGAAGGAGGCTGTAGAATTTGAAATTGATAAGGAAAAATTGTTTGCTGATATTCATGGAGTTCTCGATTCAGCAATGAGTTGGGAGAAGAGAGCTATGGATTTTCTAGCGCATGGGGCCCAGTTATATGATTTTGAAGAGATTATAAGGACTTCTGAAGATTTATGTGTCATTCTACCTTCTCTTCATAATGTCAAGAATGAAGTATCCTCGGCCAAGTCTTGGCTAAATATTTCAAAGCCTTTCTTAGAGTCTGTTCTCCCTACGTCATCTGCACCAAGATTGCAGCTGAAATTTGAAACACTAAAGGAGTTGGTTTCTCAGTCAAAACTCCACAAGGTCACTTTGGAAGAAAGCAGAGTGCTTGCTGAGGTTCTGAGAAAATGCGAGAATTGGAAAGATGGAGCAAACTTTTTATTGCAAGATATTGATAATCTTTTGAATGCGGATGATATAGGGGACGGGCTGAGCAATTGTCTTATTCTTAAGATCGAACAATTAGTTGATAGAATCGATACTATAATTACAGCCGGTATATCTCTAGGTTATGACTTCTGTGAGATTTCCAGACTCCAAAGTGCTTGTTCTACTCTCATGTGGTGCAATAAAGTTCTTTCTCTCTGCCATGGTATTCCTTCTTATCAGGATGTTGAGAGCTTGATGAGGGTTGAAGAGGATAATTCTTGTTTATATGCCTCTGGTGTTATGTGGAGCTTATTGGTGGAAGGTGTCAAATGGCTGAAACAAGCCTTAGAGGTGATTCCTGGAACTTGCAATTCTAAACAAAGAAAGTTGAGCGATGCTGAGGAATTACTTTCTAACTCTCAGAGTATCAGAATCAACTTCTCAGCCATGAATGGTCAACTTGTAAATGCTATTCAGAAGCACAAGTTGTGGCAGGAAGAAGTTCGCCAATTTTTCATTATGAAGCGTGCTGAACGATCGTGGACTCTGTTATTAAAGCTTAAGGAAGAAGGAGACATCGTTGCCTTCAATTGTTCAGAGCTACATTTAATTTTTTCCGAAGCTGAAAAGATTGAGAAGTGGAAGAAACAAATGGGGGAAATCATGAAAACATCTTTTGGGGATGGAAGTTCTCTTCTTGAATCTCTACGAGAGATAAAGAAATCAATGGATAGATCCCTATACATATATGAGAAGTCGTTGCTCTACACTGATCAGAACTTATGTGTGTGTTGCTCTTGCGATTCACAGGATCAGCATCTTTTTACTTGCTCAGTATGTAAAGAAAGCTACCATTTGCAGTGCCTAGGGCAAGCAAGAGAAAAAACAAGCAATACAGATATCTTTACATGCCCTTATTGCTATAGCTCAAGGGGTGTATTATCAATTGATAAAAGTGGAGGTCCCTTGAGATTTTTAGCAAATCGTCCTGAACTAGAAATGCTCACTAAGCTCAAATCTGATGCTGTGAACTTCTGTGTCTGGATGGAAGAGGAAGATGTATTAAAGCAACTGATAGAGCAGGCTTTAGTATGCAAATCTCATTTGTCAGAAGTCTTGGACTTTGCATCACGTTGTCATGATAAAGATTTTAGTATTGCCTGCAAGAGGTTAACTGTAGCGTTAAAGGCTATGGATGTTGCAGGCATTAACGATCATGAAGGTAAGTGCGGTCTTGAGATGGAACTGTTGAGGAACTCGTGGAGATTCAGAGTCAAGGAAGCTCTTGAAGGTTCTGAAAAACCAACAATGCAACAAGTCCTGGAGCTTATCGAAGAGGGATCTGCGATAAGCATTCTGCCTGAAGATTGCTACAGACAGAAACTTTGGGAAGTGAAGACTGTTTGCTCAAAGTGGAAAAGTCTTGCAAGGAAGGTTTCAGCCGACTGTGGGGCTCTTGAATTGGAGAAAGTTTTTGAATTGATCCTCGAGGGTGACAATTTACCTGCATACCTCGAGAGGGAGACCAAGTTATTAAGAAATCGAAGTATGCTTTATTGCATTTGCCGCAAGCCTAATGATCGCAGACCAATGCTTGCTTGTGATATTTGTGAAGAGTGGTATCACTTTGATTGTGTCAAGATAGAATCTACTCCCAAGATATACATTTGCCCTGCTTGCAAACCGCAAGTAGACAATAAAATGTTGATTCAGCTATCAACAGAATATGAAAGTTCAACTAGCGCAAAGTTTGTGGAGCCAAAGACCCCTTCTCCTCAACACACGAAACGGAGATCAAAACCGAAGAAAACAAAGCGAAATTTAGTTCGAAGTGTGACGGATTGTTACAGAGAATTCAGGTGCTCAAGTGGAATGGAACGCTTATGGTGGCAAAACAGGAAGCCTTTCAGGAGAGTAACAAGAAGGAGAGCAGAGTTTGGAAGTCTTTCTCCATTTTTCCTCGTTGAACAATAA 5541 40.14 MGKGRPRAVEKGVIGQNLSVCSSTSLNIPSGPVYHPTEDEFRDPLEYIYKIRPEAEPYGICRIVPPKNWKPPFALRLDSFTFPTKTQAIHQLQVRPAACDSETFELEYNRFLDDHFGKKMKKKVVFEGEELDLCKLFNAVKRYGGYDKVVKEKRWGEVFRFVRSTRKISECAKHVLCQLYREHLYDYENYYNKLNKDVTKSSKRKMQDEKLSECLAGFSTSKRRRQNTDDGRVSVSKLKEEENNDQICEQCKSGLHGEVMLLCDRCDKGWHIYCLSPPLKQVPPGNWYCLDCLNSEKDSFGFVPGKCFSLEAFKRMDYRAKKKWFGSGSASRMQIEKKFWEIVEGSFGEVEVKYGSDLDTSVYGSGFPRENFQRPESIDAKEWDEYCNSPWNLNNLPKLKGSMLRAIRHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGDPKCWYSVPGSEATAFEKVMRNNLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYTVQQEPGNFVVTFPRSFHGGFNLGLNCAEAVNFAPADWMPYGGFGEELYQLYHKPAVFSHEELICVIAKMDCSNRVSPYLKKELLRIYSKEKSLREQLWKNGVIRSSPLPPRKCPEYISTEEDPTCVICKKYLYLSAIGCRCRRSAFVCLEHWQHLCECKYSRRRLLYRYTLAELYDLVGIIDRCGSGDTTESKDLRQAGLCYTERCTLTKKVKGGRVTLSQLAEKWLLHSSKVLQDPFSSEACVKALREAEQFLWAGHDMDNVRDVVRNLDETQKWVRRIEDSLSKIEAWSCDHSGSLEKICLDHVNNLLSLPPISCNHPGYLKLKDYVEEAKILIQDIDNALSTCPDVSEWEILYSRVCAFPIHIEESEKLLENISIAKSCLESVREILEKQPAAFELEILYKLKSKILELGMQLPETEMVLDLTRQAELHRSRCAEIMNGPMNLKTVELFLQESNGFAVNIPELKLIRQYHDDVVKWNARLNAVMVNVHEREDQHNVIEELNCILRDGLSLKIKVDDVPIIEVELKKASVREKAQKLRNTKVTMEFMQKLMKEAVEFEIDKEKLFADIHGVLDSAMSWEKRAMDFLAHGAQLYDFEEIIRTSEDLCVILPSLHNVKNEVSSAKSWLNISKPFLESVLPTSSAPRLQLKFETLKELVSQSKLHKVTLEESRVLAEVLRKCENWKDGANFLLQDIDNLLNADDIGDGLSNCLILKIEQLVDRIDTIITAGISLGYDFCEISRLQSACSTLMWCNKVLSLCHGIPSYQDVESLMRVEEDNSCLYASGVMWSLLVEGVKWLKQALEVIPGTCNSKQRKLSDAEELLSNSQSIRINFSAMNGQLVNAIQKHKLWQEEVRQFFIMKRAERSWTLLLKLKEEGDIVAFNCSELHLIFSEAEKIEKWKKQMGEIMKTSFGDGSSLLESLREIKKSMDRSLYIYEKSLLYTDQNLCVCCSCDSQDQHLFTCSVCKESYHLQCLGQAREKTSNTDIFTCPYCYSSRGVLSIDKSGGPLRFLANRPELEMLTKLKSDAVNFCVWMEEEDVLKQLIEQALVCKSHLSEVLDFASRCHDKDFSIACKRLTVALKAMDVAGINDHEGKCGLEMELLRNSWRFRVKEALEGSEKPTMQQVLELIEEGSAISILPEDCYRQKLWEVKTVCSKWKSLARKVSADCGALELEKVFELILEGDNLPAYLERETKLLRNRSMLYCICRKPNDRRPMLACDICEEWYHFDCVKIESTPKIYICPACKPQVDNKMLIQLSTEYESSTSAKFVEPKTPSPQHTKRRSKPKKTKRNLVRSVTDCYREFRCSSGMERLWWQNRKPFRRVTRRRAEFGSLSPFFLVEQ 1846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41612946 41641385 - CrPI670011_09g022440.1 Cre09g2244 508912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2244 1846 ProSiteProfiles Zinc finger PHD-type profile. 1448 1499 IPR019787 -
Cre09g2244 1846 PANTHER LYSINE-SPECIFIC DEMETHYLASE 24 919 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)
Cre09g2244 1846 ProSiteProfiles JmjC domain profile. 385 551 IPR003347 -
Cre09g2244 1846 ProSitePatterns Zinc finger PHD-type signature. 248 292 IPR019786 -
Cre09g2244 1846 Gene3D Cupin 32 536 - -
Cre09g2244 1846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 294 IPR013083 -
Cre09g2244 1846 SMART cupin_9 385 551 IPR003347 -
Cre09g2244 1846 SUPERFAMILY FYVE/PHD zinc finger 1701 1755 IPR011011 -
Cre09g2244 1846 Pfam JmjC domain, hydroxylase 418 534 IPR003347 -
Cre09g2244 1846 FunFam Predicted protein 353 556 - -
Cre09g2244 1846 Pfam jmjN domain 32 65 IPR003349 -
Cre09g2244 1846 SMART ARID_2 95 188 - -
Cre09g2244 1846 MobiDBLite consensus disorder prediction 1770 1793 - -
Cre09g2244 1846 CDD PHD_RSF1 248 292 - -
Cre09g2244 1846 Coils Coil 1024 1044 - -
Cre09g2244 1846 ProSitePatterns Zinc finger PHD-type signature. 1709 1749 IPR019786 -
Cre09g2244 1846 SUPERFAMILY Clavaminate synthase-like 341 567 - -
Cre09g2244 1846 SUPERFAMILY FYVE/PHD zinc finger 1425 1497 IPR011011 -
Cre09g2244 1846 Coils Coil 1051 1071 - -
Cre09g2244 1846 SMART JmjN_1 30 71 IPR003349 -
Cre09g2244 1846 SUPERFAMILY FYVE/PHD zinc finger 235 296 IPR011011 -
Cre09g2244 1846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1700 1763 IPR013083 -
Cre09g2244 1846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1442 1508 IPR013083 -
Cre09g2244 1846 ProSiteProfiles Zinc finger PHD-type profile. 245 295 IPR019787 -
Cre09g2244 1846 Pfam PHD-finger 248 292 IPR019787 -
Cre09g2244 1846 Pfam PHD-finger 1709 1749 IPR019787 -
Cre09g2244 1846 SUPERFAMILY ARID-like 81 199 IPR036431 GO:0003677(InterPro)
Cre09g2244 1846 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677(InterPro)
Cre09g2244 1846 CDD ARID 100 188 - -
Cre09g2244 1846 FunFam Transcription factor jumonji (JmjC) domain-containing protein 18 121 - -
Cre09g2244 1846 Pfam PLU-1-like protein 946 1191 IPR013637 -
Cre09g2244 1846 Gene3D - 84 189 IPR036431 GO:0003677(InterPro)
Cre09g2244 1846 SMART PHD_3 247 293 IPR001965 -
Cre09g2244 1846 SMART PHD_3 1708 1750 IPR001965 -
Cre09g2244 1846 SMART PHD_3 1452 1497 IPR001965 -
Cre09g2244 1846 Pfam C5HC2 zinc finger 627 679 IPR004198 -
Cre09g2244 1846 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Cre09g2244 1846 SMART bright_3 99 193 IPR001606 GO:0003677(InterPro)
Cre09g2244 1846 Pfam ARID/BRIGHT DNA binding domain 102 188 IPR001606 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2244 K11446 - - csv:101216734 3507.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g2017 Cre-Chr3:37144156 Cre09g2244 Cre-Chr9:41612946 6.10E-08 dispersed
Cre09g2244 Cre-Chr9:41612946 Cre11g1512 Cre-Chr11:23612276 7.90E-93 dispersed
Cre09g2244 Cre-Chr9:41612946 Cre10g0393 Cre-Chr10:2764424 1.10E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g328 . . . . . . . . . . Cma02g01458 . Car02g01224 . . . Cpe05g00329 . . . . . . . . . . . . . . Cone8ag0310 . . . . Csa05g00287 Chy09g01219 . . . . . . . . . . Cmo02g01493 . . . . . . . Bhi12g00248 . . . . . . Cla01g00269 Cam01g0278 Cec01g0270 Cco01g0285 Clacu01g0277 Cmu01g0265 Cre09g2244 Lsi09g00264 . . Cme09g01756
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010126 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54438 PF08429 PLU-1 6.90E-24 No_clan Cre TR