Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2252 ATGTATCAAGGAAACTGTGAAAGATTTGAGAAAATGAACAAACAGAATAAGCCTTGTGTAAGCAATCGGCCATCAATATATTACTGGCGGAGACCAGATGAGGGGATATCTTCTGAGCTGGCTGATTTTGTCCTTGAAAATGATACCTCCAACACTTATTATGCCAAACACAGTAAGGATGGCAGTACTATAAATGAATCTAAGTCTTCTGAGATATTGAGCACAGCTCAGGTCATTGCAATTTTTGGCCAAGTATTGAATCTTGCTAGTCGTCCTTTTACCTTTTTCCAACCAAAGGAGGTCTTGAACCAAGACAATGATGATTCCAATGAGGTTACCTTCAATAGTGTGGTTGAAGTTAATGACAAAACAATTACTTCACCGGAAATTAAAAACTTCTGTGTTGATATAAGGACTGATGGCCAATCTTCTCCTCTGCTGCAGCCTGCATTGGGCTTGAATTGTTTGACAGTAACTCAGAAGATGTCTTTGTTAGAACCTTGTGAATATCATTCCACATCATCAGTTTGGAGTCTACTAAATGGTGGTAGTGACATGTCAGCTAAATCCTGGAAAGGAAAAGGCCTTACTAGTGTACGAATCTCGCACGACATGGGTAAGATATATGGATGGATGAACTGTGTAAGTCATAGTGAAGCAGGCTACCCTGTGAAAGTTGCTAATACTGGAAGCATGAAAGCCAATGCATTCAAGGCTAGAGATGGTCTTCATGAAGCAGGGGTCTGCATTTCAGGAGCTTCAAGTTTTCTTGTTCATGAGTTGATTAATGAAACTTCAAGGAATACTCCTATGTTCCAATCAATTAATGTATCATCTTTTTTCATCCGAAAGTTGGAAATAAAAATGTTAGAAAATGTTTATATGGCCTCTCGTATCCTTATGATTGTTCAAGATAATAAGGCAGATGGCAGTCTAGTAGAGAGCCCAAGTCAAGATATTTTGGCAGCTCATTCAGTACCTTCCGTAGATGGTGCATTAGACAATTTAGACTACAGGCAGAAGACTAATAGTAGTAGTGAACAACATGAGAATAAAACCAAAAAGTTGGACGAGCTCATTGTTGAAAATGAGTACAACAGAGAGAATTCCTCGTTGACCCGTGAAAAATCTTGTTACACTATTGCTAAGCAAGAACATGCCTTTGCAGGGGCGTTGGCTGGTGTATTTGTCAGTCTTTGTCTACATCCTGTTGATACAATCAAAACAGTGGTTCAGTCTTATCATGCAGAACAGAAGTCTCTCAGTTACATTGGAAAATCAATTGTCTCCAATCGAGGTTTAAGTGGACTTTATCGTGGAATCTCCACCAACATTGCTTCTTCAGCTCCGATATCTGCTGTTTACACTTTCACATATGAATCAGTTAAAGGAGCTTTGCTTCCACTTCTCCAAGAGGAGTATCGCTCTATTGTCCACTGTATGGCTGGTGGTTGTGCAAGTATTGCTACATCTTTTCTTTTTACCCCAAGTGAGCGTATAAAACAGCAGATGCAAGTTAGTGCACACTACCATAACTGCTGGAATGCCTTTGTTGGTGTTGTTGCAAAGGGTGGATTGCGTGGATTATATACTGGGTGGGGAGCTGTTCTTTGCAGAAATGTACCACACTCAATTATCAAGTTCTATACATATGAAAGTTTGAAGGGATTGATGAAATCTAATGCTCAACAAACTACTTCACAAACGTTAGTATGTGGAGGAGTAGCAGGATCTACTGCCGCTTTGTTTACCACTCCTTTTGATGTTGTAAAGACCAGATTACAAACGCAAATACCAGGATCTCTGAGCCCATATAAAAGTGTAATTCAAGCACTCTATGAAATAGGCAAGAAAGAAGGTCTGAAAGGCCTTTACAGGGGCCTGACTCCAAGATTGATTATGTACATGTCTCAAGCGAGGCAAAGCATCAAAATATTAGCTTTGTTCTCTAAATGTCCAGCTCCCTGTAGTTCTTTGACGTCTAAGAAATCAAATGCCCCGTCTCCGAGAGCCCGTGTGGTTGCTGAGAAGGTTCCTTGTACAATTTCTTCCATTGAAGCTTTATCAAGCAGCTTCCCTAACTTGAATCAGGCAGTCTCCCAAAAGTCAAGGTGGAACCATCTGAAGAAGCCATAA 2136 40.22 MYQGNCERFEKMNKQNKPCVSNRPSIYYWRRPDEGISSELADFVLENDTSNTYYAKHSKDGSTINESKSSEILSTAQVIAIFGQVLNLASRPFTFFQPKEVLNQDNDDSNEVTFNSVVEVNDKTITSPEIKNFCVDIRTDGQSSPLLQPALGLNCLTVTQKMSLLEPCEYHSTSSVWSLLNGGSDMSAKSWKGKGLTSVRISHDMGKIYGWMNCVSHSEAGYPVKVANTGSMKANAFKARDGLHEAGVCISGASSFLVHELINETSRNTPMFQSINVSSFFIRKLEIKMLENVYMASRILMIVQDNKADGSLVESPSQDILAAHSVPSVDGALDNLDYRQKTNSSSEQHENKTKKLDELIVENEYNRENSSLTREKSCYTIAKQEHAFAGALAGVFVSLCLHPVDTIKTVVQSYHAEQKSLSYIGKSIVSNRGLSGLYRGISTNIASSAPISAVYTFTYESVKGALLPLLQEEYRSIVHCMAGGCASIATSFLFTPSERIKQQMQVSAHYHNCWNAFVGVVAKGGLRGLYTGWGAVLCRNVPHSIIKFYTYESLKGLMKSNAQQTTSQTLVCGGVAGSTAALFTTPFDVVKTRLQTQIPGSLSPYKSVIQALYEIGKKEGLKGLYRGLTPRLIMYMSQARQSIKILALFSKCPAPCSSLTSKKSNAPSPRARVVAEKVPCTISSIEALSSSFPNLNQAVSQKSRWNHLKKP 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41717831 41723965 - CrPI670011_09g022520.1 Cre09g2252 508920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2252 711 SUPERFAMILY Mitochondrial carrier 385 637 IPR023395 -
Cre09g2252 711 ProSiteProfiles Solute carrier (Solcar) repeat profile. 564 652 IPR018108 -
Cre09g2252 711 Pfam Mitochondrial carrier protein 475 560 IPR018108 -
Cre09g2252 711 Pfam Mitochondrial carrier protein 564 638 IPR018108 -
Cre09g2252 711 Pfam Mitochondrial carrier protein 385 466 IPR018108 -
Cre09g2252 711 ProSiteProfiles Solute carrier (Solcar) repeat profile. 474 557 IPR018108 -
Cre09g2252 711 ProSiteProfiles Solute carrier (Solcar) repeat profile. 381 465 IPR018108 -
Cre09g2252 711 FunFam Mitochondrial substrate carrier protein-like 360 508 - -
Cre09g2252 711 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 325 638 - GO:0000095(PANTHER)|GO:0005743(PANTHER)|GO:0009941(PANTHER)
Cre09g2252 711 Gene3D Mitochondrial carrier domain 355 474 IPR023395 -
Cre09g2252 711 Gene3D Mitochondrial carrier domain 475 641 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2252 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2428 Cre-Chr6:32164458 Cre09g2252 Cre-Chr9:41717831 1.80E-33 dispersed
Cre08g0616 Cre-Chr8:19081475 Cre09g2252 Cre-Chr9:41717831 1.70E-34 dispersed
Cre08g1646 Cre-Chr8:28970917 Cre09g2252 Cre-Chr9:41717831 4.80E-09 dispersed
Cre09g1945 Cre-Chr9:38283890 Cre09g2252 Cre-Chr9:41717831 1.90E-14 dispersed
Cre09g2252 Cre-Chr9:41717831 Cre04g1463 Cre-Chr4:33426386 3.70E-06 dispersed
Cre09g2252 Cre-Chr9:41717831 Cre05g2263 Cre-Chr5:34197596 2.90E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g321 . . . . . . . . . . Cma02g01450 . Car02g01217 . . . Cpe05g00338 . . . . . . . . . . . . . . Cone8ag0303 . . . . Csa05g00280 Chy09g01229 . . . . . Bpe08g01484 . . . . Cmo02g01486 . . . . . . . Bhi12g00262 . . . . . . Cla01g00261 Cam01g0267 Cec01g0259 Cco01g0274 Clacu01g0266 Cmu01g0255 Cre09g2252 Lsi09g00256 . . Cme09g01764
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006178 1 3 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 4 6 1 37