Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2254 ATGGCTGAATCCAAACTGAAATTGGAGCTGGTGGAGTGGTTAAATTTCCTGCTCCCCGATATAAATTTGCCACTGGATGCTTCAGATGAGGAATTGAGAGCATGCTTGATTGATGGAACTGTACTATGCAGCATGTTGGATAAACTATGCCCTGGCGCAGTTCAGGGAGGCAATTCTAAGCCCATCGTTCCTAATATTGAGAGTTTTCTAATAACTCTGGATGAATTAGCACTTCCTGGATTTGAACCTTCTGCCTTAGAGCAGGGATCTATTGCACCGGTTTTGCACTGCTTGAGCACACTTCGAGCTTCTTTTGATTTGAGTGTTGGGGATGAGTACACTCAAAATTATTCACGAAAAAAATGGAACTTATATGAAGTAGACTCATTAGATGGAATCAATAATTTATCCGGGCAAAGATTTCAAGATTTTCAGAATGGTTCGGTTGTATCAGTGCCATCAAATGGTTTAAACAGTCATATTCAATACGAGGATCATGAAGGGCAAGAACAAAATCTTGATGTTTCTGGTTCTAACATCTTGGAGTTGATAAAATCAAAGAATCTTGAGAATGTCTCTACTCAATCACTTTTCAATATGATCAATCGAATTCTGGATGGCAGTGTTGAAACAAAAAATGGAGATGTGTCACATCAAGTAGCTTATATTCTGAGAAAAGTTGTACAAGTGCTTGAGCAGAGGATTTTAACTCATGCTGGAAACCTGAGACATCAAAGCAATCTTTTGAAAGCTCGGGAGGAGAAATTTCTCTCAAAATTAAGAGTCCTTGAAACCCTTGCAACAGGGACCACGGAAGAAAATGAGGTTGTCATGAACCAGCTTCAGCGTTTGAAGATTGAAATGTTCAAAGTAGAGGAGATGAAAAACTGTGGGGAGCAGGATAAGATGGCGTTGAAGGAGCAAAAGGCACTCTGTGATGTCGAGCTTTCAAATCTTAAAGATGAGCTAGACAAAGTTAAAAGGGAACATGAAAATCATTGCTTACAACTGGAAACAAATGCTAAGGAGGAGAAAGCTAAGTTTGAGGAGAAACTAAATGAACTTGAATACTTATTAGCTGATTCCAGGAAGAACGTGAAGGAACTTGAGACATTTTCTGAATCTAAATCACTGAGATGGAAAAAGAAAGAGTTCGTCTATCAAAATTTTGTTGATGATCTGCGTCGAGCTTTTCAGGAATTAAGGATTTCAGTGGAGTCCATCAAACGTGAGGTCTTGAATACAAAAGGAAACTATGCTGAGGATTTTAATTTCCTTGGATCGAAGTTCAAAGGATTAGCAGACGTGGCTCAGAATTACCATGCAGTTCTGAACGAAAATAGAAGATTGTATAATGAAGTTCAGGATTTAAAAGGCAACATTCGAGTGTATTGTCGGATACGGCCATTCCTTCCAGGACAAAGCAAGAAGCTAACTACAGTTGAGTATATTGGTGAAAATGGTGAATTGGTGATTATAAATCCCGCTAAACAAGGAAAAGACAATCGTAGACTATTCAAATTCAATAAAGTTTTTGGTCCGACATGTTCACAAGAGGATGTGTTTTTAGACACTCAACCATTAATTCGATCTGTCCTCGATGGATATAATGTTTGCATATTTGCTTATGGACAAACTGGTTCGGGAAAGACCTATACTATGAGTGGACCTGATGTATCATTGAGAGCAGAATGGGGTGTTAACTATCGAGCATTAAATGACCTCTTTGAAATTTCTCAAAGCAGGAAGGGCTCTATTTCCTATGAAATTGGTGTCCAAATGGTTGAGATATACAATGAGCAAGTCCGTGATCTGCTCTCAACTAGCGTACCTGATGCCGGTATGCATCCTGTTAGATCTACTAGCGATGTCCTGGATTTGATGAAGATTGGATTGACAAACAGGGCAGTTGGAGCCACCGCCTTGAATGAAAGAAGCAGCAGATCTCATAGTGTGCTGACAATTCATGTTCGTGGTGTGGACTTGGAGACAGATGCTATCTTACGTGGTAGTCTTCATTTAATAGATCTTGCCGGTAGTGAAAGGGTGGACCGTTCAGAGGCGACTGGAGATAGGCTGAAGGAGGCACAACACATTAACAAATCATTGTCAGCACTTGGGGATGTAATTTTTGCTCTTGCACAGAAGAATTCGCACATACCTTACAGAAATAGCAAATTAACCCAAGTCCTCCAAAGTTCTTTAGGTGGTCAAGCAAAGACGCTCATGTTTGTACAGATTAATCCCGATGTAGAGTCGTACTCTGAAACAATAAGCACCCTGAAGTTCGCAGAAAGAGTTTCTGGTGTAGAGTTGGGTGCTGCCCGCAGCAATAAAGAGGGTAGATATGTTAGAGAACTCATGGATCAGGTGGCCGTTCTCAAGGATACCATTGCAAATAAAGATGAGGAGATTGAGCGGTTGCAGTTGCTTAAAACTAATGGCAATGGTGTAAAGCATGGCGCTGGTTCCCTAAGATATGAGTCATTTTCTCCTAGAAGGTACTCTAGCACAACTCCTCGGCAGAGCCAAAAGCCATCAGGGAGAAAAGGCTTAGGGTTGGCGAATAAAGCAGCATCTGACATGGACAATTTCTCAGATTATGACAGGCGTTCTGAAGCTGGATCACTTCAGTCTATGGATGACTTTAGACATCATAAGCGTTCTGGATCTGGATCACATATGTTTATAGAAGACTTTAGACATAAGCGTTCTGGATCTGGGTCACATCTGTCTGTAGAGGACTTTAGACATCAGAAGGAATCTTCTTCACAGTCAAGGGCTTTAAGTCAGAATGTTACTGATGATGTTGACCTTTTAGGCTTTGGCAATGCTGATTCTGACGAGAGATTAAGTGACATATCAGATGGTGGGCTTTCGATGGGAACTGAAACCGATGGATCAATTTGCAGTGTTGTGGAATATACTCTATTCCCTGAAGTTCTAAAACCATCAGATGTTCCGTTTGCCGATACCAAATACCCGGAGAGCACATTGGATGTAAACAGGCCAGCAGAGACTGCAACAACTGGGGGGAAGTCATTGGTTCCTATTCCAGAAAAAACCAATGTATCATTGAAGTCAGGCCCCAGGCCCCCACAAAAGCCCGTGCAAGCAAAACCGTCAAGAGTTTCATTGACGAAAAGCTCCTCAAAGGCTCCATCAGCATCAAGTGCCAAAAAAACGATTGTTGGTAGCTCCTCGGTGATGAAAAGCCGCAAAAGGTGGAAGTGA 3234 41.31 MAESKLKLELVEWLNFLLPDINLPLDASDEELRACLIDGTVLCSMLDKLCPGAVQGGNSKPIVPNIESFLITLDELALPGFEPSALEQGSIAPVLHCLSTLRASFDLSVGDEYTQNYSRKKWNLYEVDSLDGINNLSGQRFQDFQNGSVVSVPSNGLNSHIQYEDHEGQEQNLDVSGSNILELIKSKNLENVSTQSLFNMINRILDGSVETKNGDVSHQVAYILRKVVQVLEQRILTHAGNLRHQSNLLKAREEKFLSKLRVLETLATGTTEENEVVMNQLQRLKIEMFKVEEMKNCGEQDKMALKEQKALCDVELSNLKDELDKVKREHENHCLQLETNAKEEKAKFEEKLNELEYLLADSRKNVKELETFSESKSLRWKKKEFVYQNFVDDLRRAFQELRISVESIKREVLNTKGNYAEDFNFLGSKFKGLADVAQNYHAVLNENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKKLTTVEYIGENGELVIINPAKQGKDNRRLFKFNKVFGPTCSQEDVFLDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPDVSLRAEWGVNYRALNDLFEISQSRKGSISYEIGVQMVEIYNEQVRDLLSTSVPDAGMHPVRSTSDVLDLMKIGLTNRAVGATALNERSSRSHSVLTIHVRGVDLETDAILRGSLHLIDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKNSHIPYRNSKLTQVLQSSLGGQAKTLMFVQINPDVESYSETISTLKFAERVSGVELGAARSNKEGRYVRELMDQVAVLKDTIANKDEEIERLQLLKTNGNGVKHGAGSLRYESFSPRRYSSTTPRQSQKPSGRKGLGLANKAASDMDNFSDYDRRSEAGSLQSMDDFRHHKRSGSGSHMFIEDFRHKRSGSGSHLSVEDFRHQKESSSQSRALSQNVTDDVDLLGFGNADSDERLSDISDGGLSMGTETDGSICSVVEYTLFPEVLKPSDVPFADTKYPESTLDVNRPAETATTGGKSLVPIPEKTNVSLKSGPRPPQKPVQAKPSRVSLTKSSSKAPSASSAKKTIVGSSSVMKSRKRWK 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41728792 41738657 - CrPI670011_09g022540.1 Cre09g2254 508922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2254 1077 Coils Coil 440 460 - -
Cre09g2254 1077 MobiDBLite consensus disorder prediction 905 922 - -
Cre09g2254 1077 MobiDBLite consensus disorder prediction 905 932 - -
Cre09g2254 1077 MobiDBLite consensus disorder prediction 940 959 - -
Cre09g2254 1077 PRINTS Kinesin heavy chain signature 535 556 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre09g2254 1077 PRINTS Kinesin heavy chain signature 720 741 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre09g2254 1077 PRINTS Kinesin heavy chain signature 671 689 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre09g2254 1077 PRINTS Kinesin heavy chain signature 640 657 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre09g2254 1077 MobiDBLite consensus disorder prediction 830 846 - -
Cre09g2254 1077 FunFam Kinesin-related protein3 611 812 - -
Cre09g2254 1077 Pfam Kinesin motor domain 466 768 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre09g2254 1077 PANTHER KINESIN-LIKE PROTEIN KLP-3 8 952 IPR027640 GO:0003777(InterPro)|GO:0007017(PANTHER)|GO:0007018(InterPro)|GO:0008017(PANTHER)|GO:0015630(PANTHER)
Cre09g2254 1077 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 402 610 - -
Cre09g2254 1077 ProSiteProfiles Calponin homology (CH) domain profile. 4 106 IPR001715 GO:0005515(InterPro)
Cre09g2254 1077 MobiDBLite consensus disorder prediction 821 869 - -
Cre09g2254 1077 Gene3D Kinesin motor domain 402 772 IPR036961 -
Cre09g2254 1077 MobiDBLite consensus disorder prediction 994 1077 - -
Cre09g2254 1077 MobiDBLite consensus disorder prediction 1040 1069 - -
Cre09g2254 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 808 IPR027417 -
Cre09g2254 1077 ProSitePatterns Kinesin motor domain signature. 670 681 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cre09g2254 1077 Gene3D - 2 106 IPR036872 -
Cre09g2254 1077 ProSiteProfiles Kinesin motor domain profile. 460 770 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre09g2254 1077 Coils Coil 309 365 - -
Cre09g2254 1077 Coils Coil 391 411 - -
Cre09g2254 1077 SMART kinesin_4 458 778 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre09g2254 1077 SUPERFAMILY Calponin-homology domain, CH-domain 6 101 IPR036872 -
Cre09g2254 1077 Coils Coil 784 811 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2254 K27887 - - csv:101218386 1890.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2254 Cre-Chr9:41728792 Cre10g1785 Cre-Chr10:32273909 6.50E-196 dispersed
Cre09g2254 Cre-Chr9:41728792 Cre04g1459 Cre-Chr4:33379885 1.00E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g320 Blo02g01110 Blo03g00212 Bda06g00112 Bda08g00516 Bpe05g00646 Bpe07g00107 . Bma14g00667 . . Cma02g01449 Cma15g01228 Car02g01216 Car15g01107 . . Cpe05g00339 . . . . . . . Cla10g00365 Cam10g0377 Cec10g0397 Cco10g0390 Clacu10g0383 Cmu10g1218 Cre10g0632 Cone8ag0301 Cone12ag0307 . . . Csa05g00279 Chy09g01230 . . . . . . Bpe11g00603 Bma05g00820 Bma12g00075 . Cmo02g01485 Cmo15g01292 . . . . . Cpe13g00155 Bhi12g00265 . . . . . Lcy12g1649 Cla01g00260 . Cec01g0258 Cco01g0273 . . Cre09g2254 Lsi09g00255 . . Cme09g01765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002869 5 3 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 1 2 54