Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2256 ATGGACCCCAAAGAAGTCAAGTCCGATTTGGTTTTGATTCTAGACTTTGGTTCGCAATATACCCACCTCATCACTCGCCGGATTCGGAGCCTCTCTGTTTTTTCTCTTTGCATTTCTGGTACTTCCCCGCTTAAAGCCATCACTGATCTCAACCCACAAGTTGTTATTCTTTCCGGCGGGCCTCACTCTGTCCACGCTAACGACTCGCCGAGTTTCCCTTCTGGGTTCGTCGAGTGGGCGGAGGCGAATGGGGTTTTTGTTTTGGGTGTTTGTTATGGGCTCCAGTTGATTGTGCAGAGGTTGGGGGGTGTGGTGAAGGTTGGGGAGAAACAGGAGTATGGGAGAATGGAGATTGAGGTGGAGAAGGCTAATGCGTTGTATGGGACTAAGAAGGTTGGGGACCGGCAAGTTGTTTGGATGAGCCATGGAGATGAGGTGGCGAAACTTCCTGAGGGTTTTGAAGTGGTGGCAAGGAGTCAACAAGGGTCAGTCGCGGCTGTGGAAAATCACTCCAAGAAGTTTTATGGGTTGCAGTATCATCCGGAGGTGACACATTCACCAGAAGGAATGGAGACGTTACGTTATTTTCTCTTTGATGTCTGTGGAATTACTGCTAACTGGAAGATGGAAAATATACTAGATGAAGAAATTAAAGTAATCAAAGAAACTGTGGGTCCAGACGAACATGTCATCTGTGCATTATCAGGAGGTGTGGATTCAACAGTTGCTGCTACTCTTGTTCACAAGGCAATTGGGGAAAGGCTTCACTGTGTTTTTGTCGACAACGGTTTATTGAGGTATAAAGAAAGAGAACGTGTAATGGAAACCTTTGAAAGAGATCTTCATCTGCCTGTTACTTGTGTCGATGCAGTTGACCAATTTCTTAGCAAGCTTAAAGGTGTAACAGATCCTGAGGTTAAAAGAAAAATAATTGGAAAGGAGTTCATTTCTATATTTGATTCATTTGGCCATGAGTTGGAACTTAAAATTGGTAAGAAGCCGTCATACTTGGTCCAAGGCACATTGTATCCTGATGTAATTGAATCTTGTCCACCACCTGGATCTGGAAGAACTCATTCCCACACAATCAAAAGTCATCATAACGTTGGAGGACTCCCTAAGGACATGAAACTGAAACTTATTGAGCCACTTAAACTCCTCTTTAAGGATGAGGTACGCCAACTGGGGAGGATATTGAACGTTCCTGATGCGTTTCTAAAGCGTCATCCTTTTCCTGGGCCTGGTCTTGCTGTACGGGTGCTGGGTGACGTAACAGAAGGCAATGCATTGGAAGTTCTTCGCCAGGTTGATGAGATTTTTATTCAATCAATCAAAGATGCTGGACTTTATGATTCGATATGGCAGGCATTTGCGGTATTTTTACCCATAAAATCAGTTGGAGTTCAAGGTGATCAAAGGACACATTCTCATGTTGTTGCTCTGAGAGCTGTTACAAGTCAAGATGGAATGACAGCAGATTGGTATAACTTTGAGCACCAATTCCTTGATAATGTGGCAAGAAAAATTTGCAACAGTGTTCGAGGCGTAAACCGGGTTGTTCAAGACATTACATCAAAGCCTCCATCAACAATCGAATGGGAATGA 1605 44.05 MDPKEVKSDLVLILDFGSQYTHLITRRIRSLSVFSLCISGTSPLKAITDLNPQVVILSGGPHSVHANDSPSFPSGFVEWAEANGVFVLGVCYGLQLIVQRLGGVVKVGEKQEYGRMEIEVEKANALYGTKKVGDRQVVWMSHGDEVAKLPEGFEVVARSQQGSVAAVENHSKKFYGLQYHPEVTHSPEGMETLRYFLFDVCGITANWKMENILDEEIKVIKETVGPDEHVICALSGGVDSTVAATLVHKAIGERLHCVFVDNGLLRYKERERVMETFERDLHLPVTCVDAVDQFLSKLKGVTDPEVKRKIIGKEFISIFDSFGHELELKIGKKPSYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPDAFLKRHPFPGPGLAVRVLGDVTEGNALEVLRQVDEIFIQSIKDAGLYDSIWQAFAVFLPIKSVGVQGDQRTHSHVVALRAVTSQDGMTADWYNFEHQFLDNVARKICNSVRGVNRVVQDITSKPPSTIEWE 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41749351 41752715 - CrPI670011_09g022560.1 Cre09g2256 508924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2256 534 Pfam GMP synthase C terminal domain 443 533 IPR001674 GO:0003922(InterPro)|GO:0005524(InterPro)|GO:0006164(InterPro)|GO:0006177(InterPro)
Cre09g2256 534 PANTHER GMP SYNTHASE-RELATED 6 534 - GO:0003921(PANTHER)|GO:0005829(PANTHER)|GO:0006177(PANTHER)
Cre09g2256 534 CDD GMP_synthase_C 229 533 IPR001674 GO:0003922(InterPro)|GO:0005524(InterPro)|GO:0006164(InterPro)|GO:0006177(InterPro)
Cre09g2256 534 PRINTS Glutamine amidotransferase superfamily signature 176 189 - -
Cre09g2256 534 PRINTS Glutamine amidotransferase superfamily signature 55 64 - -
Cre09g2256 534 PRINTS Glutamine amidotransferase superfamily signature 86 97 - -
Cre09g2256 534 ProSiteProfiles GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile. 207 408 IPR025777 GO:0003921(InterPro)|GO:0005524(InterPro)
Cre09g2256 534 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 10 206 - -
Cre09g2256 534 Hamap GMP synthase [glutamine-hydrolyzing] [guaA]. 8 534 IPR022955 GO:0003922(InterPro)|GO:0006177(InterPro)
Cre09g2256 534 Pfam Glutamine amidotransferase class-I 12 199 IPR017926 -
Cre09g2256 534 FunFam GMP synthase [glutamine-hydrolyzing] 419 534 - -
Cre09g2256 534 Gene3D - 4 204 IPR029062 -
Cre09g2256 534 FunFam GMP synthase [glutamine-hydrolyzing] 208 418 - -
Cre09g2256 534 SUPERFAMILY Class I glutamine amidotransferase-like 9 237 IPR029062 -
Cre09g2256 534 NCBIfam glutamine-hydrolyzing GMP synthase, N-terminal domain 11 203 IPR004739 GO:0003922(InterPro)|GO:0005524(InterPro)|GO:0006177(InterPro)
Cre09g2256 534 Gene3D HUPs 208 413 IPR014729 -
Cre09g2256 534 FunFam GMP synthase [glutamine-hydrolyzing] 8 205 - -
Cre09g2256 534 NCBIfam glutamine-hydrolyzing GMP synthase, C-terminal domain 211 534 IPR001674 GO:0003922(InterPro)|GO:0005524(InterPro)|GO:0006164(InterPro)|GO:0006177(InterPro)
Cre09g2256 534 CDD GATase1_GMP_Synthase 11 197 IPR004739 GO:0003922(InterPro)|GO:0005524(InterPro)|GO:0006177(InterPro)
Cre09g2256 534 SUPERFAMILY GMP synthetase C-terminal dimerisation domain 413 534 - -
Cre09g2256 534 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 196 427 - -
Cre09g2256 534 Gene3D - 414 534 - -
Cre09g2256 534 Pfam tRNA methyl transferase HUP domain 229 266 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2256 K01951 - - csv:101217911 1045.03
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g315 . . . . . . . . . . Cma02g01447 . Car02g01215 . . . Cpe05g00340 . . . . . . . . . . . . . . Cone8ag0300 . . . . Csa05g00277 Chy09g01232 . . . . . . . . . . Cmo02g01484 . . . . . . . Bhi12g00269 . . Lac11g2086 Hepe06g1540 . Lcy12g1646 Cla01g00258 Cam01g0265 Cec01g0256 Cco01g0271 Clacu01g0264 Cmu01g0253 Cre09g2256 Lsi09g00253 . . Cme09g01767
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009759 2 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33