Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2261 ATGGAGGGGAAAGAAGAGGACGTGAAGCTAGGAGCAAACAAGTTCTCAGAAAGGCAGCCAATCGGCACATCGGCGCAGACGGACAAGGACTACAAAGAGCCACCGCCGGCGCCGCTGTACGAGCCCGGCGAACTGACTTCATGGTCATTTTACAGAGCCGGAATCGCGGAGTTTGTGGCCACTTTCTTGTTCCTCTACATCACCATCTTGACGGTGATGGGAGTCAGCCGAGCTCCGTCGAAATGCTCCACCGTCGGCATTCAGGGTATCGCTTGGGCCTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCCGGTGGACACATTAATCCGGCGGTGACGTTCGGGCTTTTCCTGGCCAGGAAATTGTCCCTCACCAGAGCCATATTCTACATCGTAATGCAGTGCCTTGGTGCCATCTGCGGCGCGGGCGTCGTGAAGGGCTTCGAGGGCTCCACCTACGTGCAGAAGCTCGGTGGTGCGAACTTCGTCGCCTCTGGCTACACCAAGGGCAGCGGTCTCGGTGCTGAGATCGTCGGTACCTTCGTTCTCGTCTACACCGTCTTCTCCGCCACCGATGCCAAGAGAAATGCCAGAGATTCTCACGTCCCTATTTTGGCTCCTCTTCCCATTGGGTTTGCAGTGTTTTTGGTTCATTTGGCCACCATTCCCATTACCGGCACCGGCATTAATCCGGCCAGGAGTCTCGGAGCTGCAATCATCTACAACAGGCAACACGCTTGGGATGACCACTGGATCTTCTGGGTGGGACCTTTCATTGGAGCTGCTTTGGCTGCTATTTACCACCAAATCATCATCAGAGCAATTCCATTCAAGGCCAGGGCTTGA 861 55.98 MEGKEEDVKLGANKFSERQPIGTSAQTDKDYKEPPPAPLYEPGELTSWSFYRAGIAEFVATFLFLYITILTVMGVSRAPSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFEGSTYVQKLGGANFVASGYTKGSGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRQHAWDDHWIFWVGPFIGAALAAIYHQIIIRAIPFKARA 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41798059 41800498 + CrPI670011_09g022610.1 Cre09g2261 508929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2261 286 Gene3D Glycerol uptake facilitator protein. 37 284 IPR023271 -
Cre09g2261 286 FunFam Probable aquaporin PIP1-2 37 286 - -
Cre09g2261 286 Pfam Major intrinsic protein 44 273 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2261 286 MobiDBLite consensus disorder prediction 1 36 - -
Cre09g2261 286 NCBIfam MIP family channel protein 56 272 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2261 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 282 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Cre09g2261 286 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Cre09g2261 286 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2261 286 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2261 286 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2261 286 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2261 286 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2261 286 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2261 286 SUPERFAMILY Aquaporin-like 44 278 IPR023271 -
Cre09g2261 286 CDD MIP 52 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0757 Cre-Chr7:5744121 Cre09g2261 Cre-Chr9:41798059 2.80E-141 dispersed
Cre07g0758 Cre-Chr7:5749591 Cre09g2261 Cre-Chr9:41798059 1.60E-141 dispersed
Cre08g0699 Cre-Chr8:19992402 Cre09g2261 Cre-Chr9:41798059 8.50E-103 dispersed
Cre09g2261 Cre-Chr9:41798059 Cre10g2298 Cre-Chr10:37239567 1.40E-126 dispersed
Cre09g2261 Cre-Chr9:41798059 Cre07g0756 Cre-Chr7:5736009 3.30E-139 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2261 K09872 - csv:101217440 560.451