Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2269 ATGAGATCCAAGCCGGTTCCTGGACCGCATGTTAAATCGGCGAACAGCCGAAGCGCGAACGCCGATTCACCATTTAAAGCCGAGGCGGTTCTTCATTTGATGGAGGATTACAAGAAAGCTTTTGAAGAAGATGATGTCTACCATCTTGACGATCTTGACGACGATGATCGCAATGGTGATAAAGAAGGAGGCAAGAGAGATTTCAGCAAATTGGAGTTGAAACCTGACCATGCTAATCGGCCCTTATGGGCTTGTGCTGATGGTCGGATATTCCTTGAAACTTTCTCACCATTGTACAAACAGGCATATGATTTCCTTATTGCAATAGCGGAACCAGTTTGCAGGCCAGAATCAATGCATGAGTACAACCTCACTCCACATTCTTTGTATGCTGCGGTGTCTGTTGGTTTGGAGACAGAAACAATTATCGCGGTTCTGAGTAAGCTGTCTAAGGCCAAACTTCCCAAGGAGATGATTGATTTCATTTATGCTTCTACTGCCAACTATGGCAAGGTGAAGCTTGTCCTTAAAAAGAACCGATATCTTGTGGAATCCCCATTTCCAGAGGTGTTGCAGAAACTGCTGAAGGATGAGGTTATAGGCAGAGCCAGAATTAGTCCCGAGGATTCTCGTGGAAATGGTGAGTTTACAATTAGTAAAACAGCGGGTGAACTTGGTAGTCGCCATGAAGGATTGCTTAATGAAGCAGAAGCTGCAGCTGCAGCTGAGGAAAGAGAAACTCATTCATTTGAAATTGACCCATCACAAGTTGAAAATGTTAAACAGCGTTGCCTGCCCAATGCCTTAAATTATCCCATGTTGGAAGAGTATGACTTCAGAAATGACACTATCAATCCAGACTTGGATATGGAACTGAAACCACAGGCTCAGCCTAGGCCGTATCAGGAAAAGAGTCTTAGCAAAATGTTTGGAAATGGTAGAGCAAGATCTGGCATTATTGTACTTCCTTGTGGAGCTGGGAAGTCTCTGGTCGGTGTTTCTGCAGCCAGTCGTATCCGGAAAAGTTGTCTATGTTTAGCTACAAATGCTGTATCAGTGGATCAGTGGGCTTTTCAGTTTAAGCTCTGGTCTACCATTCGAGATGATCAAATTTGTCGGTTCACGTCAGATAGTAAAGAAAGATTTCGAGGAAATGCGGGGGTGGTTGTTACAACCTATAACATGGTTGCTTTTGGTGGTAAAAGATCTGAAGAATCTGAAAAGATTATTGAAGAAATCAGAAACAGAGAATGGGGACTACTTCTCATGGACGAGGTGCACGTGGTTCCTGCTCACATGTTTCGTAAGGTTATCAGCCTGACTAAGTCTCACTGCAAGCTTGGGCTCACTGCCACACTTGTGAGAGAAGACGAAAGAATTACAGATCTAAATTTTCTTATTGGTCCCAAGTTGTATGAAGCCAACTGGTTGGATCTTGTGAAAGGAGGATTTATTGCAAATGTGCAGTGTGCTGAAGTTTGGTGTCCTATGACAAAGGAGTTTTTTGCTGAATATCTGAAGAAAGAGAACTCAAAGAAAAAGCAGGCTCTTTATGTAATGAACCCTAATAAGTTCAGGGCGTGTGAGTTTCTCATACGGTTTCATGAACAGCAGCGTGGTGATAAGATAATTGTTTTTGCTGACAATCTTTTTGCGCTTACGGAGTATGCAATGAAGCTTCGTAAACCTATGATCTATGGTGCAACAAGTCATATTGAGAGGACAAAAATTCTTGAAGCATTCAAAACTAGTCGTGATGTGAATACCGTTTTCCTTTCAAAGGTGGGTGATAACTCTATTGATATTCCTGAGGCAAATGTGATTATTCAGATATCATCACATGCGGGTTCAAGACGTCAAGAAGCCCAACGTCTGGGTCGTATTCTTAGGGCCAAGGGTAAACATCAGGACAGGATGGCTGGGGGCAAAGAGGAGTATAATGCCTTTTTCTATTCACTTGTTTCTACTGATACACAGGAAATGTACTATTCAACTAAACGACAACAGTTTTTGATCGATCAAGGTTATAGCTTTAAGGTAATTACAAGCTTGCCACCAGCAGATGCAGGAGCTGATTTGAGCTATCATCGTCTTGATGATCAGTTGGCACTTCTTGGGAAGGTACTGAATGCAGGTGATGATATGGTAGGATTGGAGCAGTTAGAAGATGATGCAGACCAAATTGCACTCGATAAGGCTCGACGTTCAATGGGATCTATGAGTGCAATGTCGGGAGCAAATGGCATGGTTTACATGGAGTATAGCACTGGACGGAAACTCGCGGGTCAAGGGCAACTTAAGAGCAAGCCAAAAGACCCGGCGAAGAGACATCATTTGTTCAAAAAACGATTTGCCTGA 2358 43.0 MRSKPVPGPHVKSANSRSANADSPFKAEAVLHLMEDYKKAFEEDDVYHLDDLDDDDRNGDKEGGKRDFSKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLSKLSKAKLPKEMIDFIYASTANYGKVKLVLKKNRYLVESPFPEVLQKLLKDEVIGRARISPEDSRGNGEFTISKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADAGADLSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDKARRSMGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41872299 41880785 + CrPI670011_09g022690.1 Cre09g2269 508937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2269 785 FunFam Putative DNA repair helicase rad25 480 722 - -
Cre09g2269 785 SMART helicmild6 554 632 IPR001650 -
Cre09g2269 785 MobiDBLite consensus disorder prediction 771 785 - -
Cre09g2269 785 Gene3D - 480 720 IPR027417 -
Cre09g2269 785 Pfam ERCC3/RAD25/XPB C-terminal helicase 479 725 IPR032438 -
Cre09g2269 785 CDD SF2_C_XPB 490 654 - -
Cre09g2269 785 Pfam Type III restriction enzyme, res subunit 297 454 IPR006935 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0016787(InterPro)
Cre09g2269 785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 473 IPR027417 -
Cre09g2269 785 PRINTS Xeroderma pigmentosum group B protein signature 310 332 - -
Cre09g2269 785 PRINTS Xeroderma pigmentosum group B protein signature 588 606 - -
Cre09g2269 785 PRINTS Xeroderma pigmentosum group B protein signature 166 185 - -
Cre09g2269 785 PRINTS Xeroderma pigmentosum group B protein signature 417 437 - -
Cre09g2269 785 PRINTS Xeroderma pigmentosum group B protein signature 483 505 - -
Cre09g2269 785 PRINTS Xeroderma pigmentosum group B protein signature 644 667 - -
Cre09g2269 785 PRINTS Xeroderma pigmentosum group B protein signature 521 536 - -
Cre09g2269 785 PRINTS Xeroderma pigmentosum group B protein signature 80 100 - -
Cre09g2269 785 PRINTS Xeroderma pigmentosum group B protein signature 279 305 - -
Cre09g2269 785 PRINTS Xeroderma pigmentosum group B protein signature 607 632 - -
Cre09g2269 785 PRINTS Xeroderma pigmentosum group B protein signature 541 563 - -
Cre09g2269 785 PRINTS Xeroderma pigmentosum group B protein signature 735 754 - -
Cre09g2269 785 PANTHER RAD25/XP-B DNA REPAIR HELICASE 62 754 IPR050615 GO:0000112(PANTHER)|GO:0005675(PANTHER)|GO:0006367(PANTHER)|GO:0043138(PANTHER)|GO:0097550(PANTHER)
Cre09g2269 785 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 526 692 IPR001650 -
Cre09g2269 785 CDD DEXHc_XPB 290 459 - -
Cre09g2269 785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 722 IPR027417 -
Cre09g2269 785 Gene3D - 288 479 IPR027417 -
Cre09g2269 785 Pfam Helicase conserved C-terminal domain 82 204 IPR032830 -
Cre09g2269 785 MobiDBLite consensus disorder prediction 1 22 - -
Cre09g2269 785 MobiDBLite consensus disorder prediction 49 68 - -
Cre09g2269 785 SMART ultradead3 294 475 IPR014001 -
Cre09g2269 785 FunFam Probable DNA repair helicase RAD25 288 479 - -
Cre09g2269 785 MobiDBLite consensus disorder prediction 761 785 - -
Cre09g2269 785 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 309 471 IPR014001 -
Cre09g2269 785 NCBIfam DNA repair helicase rad25 67 782 IPR001161 GO:0003678(InterPro)|GO:0006289(InterPro)|GO:0006367(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2269 K10843 - - csv:101215293 1409.43
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g19 . . . . . . . Bma14g00606 . . . Cma15g01241 . Car15g01118 . . . . . . . . . . . . . . . . . Cone8ag0288 Cone12ag0294 . . . Csa05g00262 Chy09g01245 . . . . . . Bpe11g00661 . . . . Cmo15g01306 . . . . . Cpe13g00144 Bhi12g00288 . . Lac11g2069 Hepe06g1526 . Lcy12g1631 Cla01g00247 Cam01g0251 Cec01g0244 Cco01g0257 Clacu01g0249 Cmu01g0239 Cre09g2269 Lsi09g00237 . . Cme09g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011686 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30