Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre09g2271 | ATGGGCTTCCCTGCAAGCTACACTGAGCTTCTTCTCCCTAAGCTCGTCATCCACGTATTCTCCTTCCTCGGCTTCCTCCGGAAGCTTATCTCCCTCCTCTTCCGCCTCCTTGGCCTCCAAGATTTCCTCGAACCCGACATTCCTTGGCCCAATCACCCCGATTCCTTCCCCACCGGACCCTTCGGCGACCTCGATCCTCTCTCCGCTGCCGTTCTCCGTGAGATTCTCCCCGTCATCAAGTTTTCCGAGCTTCTGGATCCGCCGGAGAGCTGCGCTGTGTGCCTCTACGAGTTCGAGGCCGAAGATGAGATCCGCCGCCTTGCTAACTGCCGTCACATCTTCCACCGTGGATGCCTCGATCGGTGGATCGGTTACGGTCAGAGAACTTGCCCGCTCTGCCGGACGGTGTTTATTCCGCCCGATTTGCGGAGTGGTGGTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTTGAAGCTCTCCTCAGTGATTCTTCATCTTCAAGTCTTCTCGCTGCTGGTTTGTAG | 534 | 55.81 | MGFPASYTELLLPKLVIHVFSFLGFLRKLISLLFRLLGLQDFLEPDIPWPNHPDSFPTGPFGDLDPLSAAVLREILPVIKFSELLDPPESCAVCLYEFEAEDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPPDLRSGGCNFDDRLWEDSEIFEALLSDSSSSSLLAAGL | 177 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 41911244 | 41911777 | - | CrPI670011_09g022710.1 | Cre09g2271 | 508939 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre09g2271 | 177 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 137 | IPR013083 | - | |
| Cre09g2271 | 177 | SUPERFAMILY | RING/U-box | 72 | 140 | - | - | |
| Cre09g2271 | 177 | Pfam | Ring finger domain | 90 | 134 | IPR001841 | - | |
| Cre09g2271 | 177 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 134 | IPR001841 | - | |
| Cre09g2271 | 177 | SMART | ring_2 | 91 | 133 | IPR001841 | - | |
| Cre09g2271 | 177 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 7 | 141 | - | - | |
| Cre09g2271 | 177 | SMART | ringv_2 | 90 | 134 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre09g2271 | Cre-Chr9:41911244 | Cre04g0718 | Cre-Chr4:25292403 | 1.60E-06 | dispersed | |
| Cre05g0222 | Cre-Chr5:2138930 | Cre09g2271 | Cre-Chr9:41911244 | 3.60E-33 | wgd | |
| Cre06g1112 | Cre-Chr6:5029852 | Cre09g2271 | Cre-Chr9:41911244 | 2.00E-40 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre09g2271 | K16281 | - | csv:101215533 | 299.286 |