Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2271 ATGGGCTTCCCTGCAAGCTACACTGAGCTTCTTCTCCCTAAGCTCGTCATCCACGTATTCTCCTTCCTCGGCTTCCTCCGGAAGCTTATCTCCCTCCTCTTCCGCCTCCTTGGCCTCCAAGATTTCCTCGAACCCGACATTCCTTGGCCCAATCACCCCGATTCCTTCCCCACCGGACCCTTCGGCGACCTCGATCCTCTCTCCGCTGCCGTTCTCCGTGAGATTCTCCCCGTCATCAAGTTTTCCGAGCTTCTGGATCCGCCGGAGAGCTGCGCTGTGTGCCTCTACGAGTTCGAGGCCGAAGATGAGATCCGCCGCCTTGCTAACTGCCGTCACATCTTCCACCGTGGATGCCTCGATCGGTGGATCGGTTACGGTCAGAGAACTTGCCCGCTCTGCCGGACGGTGTTTATTCCGCCCGATTTGCGGAGTGGTGGTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTTGAAGCTCTCCTCAGTGATTCTTCATCTTCAAGTCTTCTCGCTGCTGGTTTGTAG 534 55.81 MGFPASYTELLLPKLVIHVFSFLGFLRKLISLLFRLLGLQDFLEPDIPWPNHPDSFPTGPFGDLDPLSAAVLREILPVIKFSELLDPPESCAVCLYEFEAEDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPPDLRSGGCNFDDRLWEDSEIFEALLSDSSSSSLLAAGL 177
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 41911244 41911777 - CrPI670011_09g022710.1 Cre09g2271 508939
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2271 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 137 IPR013083 -
Cre09g2271 177 SUPERFAMILY RING/U-box 72 140 - -
Cre09g2271 177 Pfam Ring finger domain 90 134 IPR001841 -
Cre09g2271 177 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
Cre09g2271 177 SMART ring_2 91 133 IPR001841 -
Cre09g2271 177 PANTHER RING ZINC FINGER PROTEIN-RELATED 7 141 - -
Cre09g2271 177 SMART ringv_2 90 134 IPR011016 GO:0008270(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2271 Cre-Chr9:41911244 Cre04g0718 Cre-Chr4:25292403 1.60E-06 dispersed
Cre05g0222 Cre-Chr5:2138930 Cre09g2271 Cre-Chr9:41911244 3.60E-33 wgd
Cre06g1112 Cre-Chr6:5029852 Cre09g2271 Cre-Chr9:41911244 2.00E-40 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2271 K16281 - csv:101215533 299.286