Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2275 ATGGCTGGAGAGCTTTGTGAAGGAGGAGAAAAATCAAACGAGATGGTAGTTGGAGGAGGGTTTTATTACAATTCCAATTCAAATTCAAACAACATCCCAAATCAGTTCACAAATCAGATCCAAACCGAGTTCGGTTCCACCACCGAACACGCGGCGGAGATGTTTAATGAGTCGAGTGGTGGCGGTGGTGGTGACGACGATGAGTCGTTTCATCAGAATATGATGGTGGTTGGACCGTGGGGGACGACAACGACGACGATGGCGACGACGGATTCTTCTTTAAGATGTGTGTTTCCATGTGAACCAAATGAAAGACCAAGCCAAGGCCTTTCTTTGTCTCTTAGTTCTTCTAATCCTTCTTCTATTGGCTTACAATCTTTTGAACTAAGACAACAACACCAATCATCTTTCCCCATTTTTCACCTTAGAAACTCAAGGTTCTTAATCCCAACTCAAGAGCTTCTTTATGAGTTTTGTAGCCTTGGAATCACCAATAACATCAATCATTCTTCTTCCTCACCAAAACAAAAACATGGCTCTTCTTCTACCACTTTCTCTCTTCAATCACTTGATTTCATGGACTTGCAAAAGAGGAAAACTAAGCTTTTCTCCATGCTTGAAGAGGTTGAAAGAAGGTATAGGCATTATTGCGAGCAAATGAAGGCGGTGGTGGCGTCATTCGAAGCGGTGGCGGGGAATGGGGCGGCGAGGGTGTACTCGGCGTTAGCGTCGAAAGCGATGTCGAGGCATTTTAGGAGCCTAAAAGATGGGATTGTGGGGCAAATTCAAGCCACAAGAAAGGCAATGGGAGAAAAGGATCCAATTGCACCTGGTACAACAAGAGGAGAAACACCAAGGCTTAGAGTGATTGATCAAGCTTTAAGGCAACAAAGAGCTTTCCATCAAATCAGCATCATGGAAAGCCATCCATGGCGCCCTCAACGTGGCCTCCCCGAGCGTTCTGTTTCGGTTCTTCGTGCTTGGCTTTTCGAACACTTTCTTCACCCGTACCCTAGCGATGTGGATAAACATATTTTAGCTCGCCAAACTGGTCTATCCAGAAGCCAGGTGTCAAATTGGTTCATTAATGCAAGGGTGAGGCTATGGAAGCCAATGGTAGAAGAGATGTATTTGGAAGAAACAAAGGAACAAGAGGAAGAGATTGACAACAGTTTCAACAACATGAACAACAATGCCAACAACTCTTTTGATGGGGTGGGGGATTTCGACGACGAAATTGACGGTCATCGATCGATCGTGACACGACTCGAGGATCAGAAGCCAACTCCGGATCAACTCCTAAGAATAGACTCGGAATGTCTCTCTTCAATCATCTCTAATAACACGGAGAAGAATGACTCAAGAACGATGAAAACCTTGCAAAACCACCACCTCCACGAAAACCACAACCACACCTTCGGACGGGTTGTGAGTGACGCCTTCGGCACGGTGGAGCTCGACTTCTCGTCCTACAACCACCATACCGGTAGTGGTGGAGTTACGTACCCTAACAACAACAACAACAATCAACATTTCAACAACGGCAATGGTGGGGGCGTGTCGTTGACATTAGGGTTACAGCAGCACGCAGCAGCTGCGGGGAATGGCAACGGAGGGGTGAGCATCGCCTTCTCTCCGGCGGCAGCGGCGGCACAAAGCTCCCTTTTCTTCACAAGAGATCACATGGAAGAATGCCAACCAGTTCAGTATTCCCTTTTAGATGGAGAAACTCAGAATCTTCCATACAGAAATTTGATGGGTGCTCAATTGCTTCATGATTTGGCTGGATAA 1791 46.34 MAGELCEGGEKSNEMVVGGGFYYNSNSNSNNIPNQFTNQIQTEFGSTTEHAAEMFNESSGGGGGDDDESFHQNMMVVGPWGTTTTTMATTDSSLRCVFPCEPNERPSQGLSLSLSSSNPSSIGLQSFELRQQHQSSFPIFHLRNSRFLIPTQELLYEFCSLGITNNINHSSSSPKQKHGSSSTTFSLQSLDFMDLQKRKTKLFSMLEEVERRYRHYCEQMKAVVASFEAVAGNGAARVYSALASKAMSRHFRSLKDGIVGQIQATRKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFHQISIMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQEEEIDNSFNNMNNNANNSFDGVGDFDDEIDGHRSIVTRLEDQKPTPDQLLRIDSECLSSIISNNTEKNDSRTMKTLQNHHLHENHNHTFGRVVSDAFGTVELDFSSYNHHTGSGGVTYPNNNNNNQHFNNGNGGGVSLTLGLQQHAAAAGNGNGGVSIAFSPAAAAAQSSLFFTRDHMEECQPVQYSLLDGETQNLPYRNLMGAQLLHDLAG 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41969914 41973042 + CrPI670011_09g022750.1 Cre09g2275 508943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2275 596 SMART HOX_1 311 375 IPR001356 GO:0003677(InterPro)
Cre09g2275 596 Pfam Associated with HOX 142 258 IPR006563 -
Cre09g2275 596 Coils Coil 378 398 - -
Cre09g2275 596 CDD homeodomain 311 372 IPR001356 GO:0003677(InterPro)
Cre09g2275 596 FunFam BEL1-like homeodomain protein 4 314 376 - -
Cre09g2275 596 SMART prehox3 136 260 IPR006563 -
Cre09g2275 596 SUPERFAMILY Homeodomain-like 312 377 IPR009057 -
Cre09g2275 596 Pfam Homeobox KN domain 328 367 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre09g2275 596 Gene3D - 314 376 - -
Cre09g2275 596 ProSiteProfiles 'Homeobox' domain profile. 308 371 IPR001356 GO:0003677(InterPro)
Cre09g2275 596 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 93 399 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1254 Cre-Chr4:31285032 Cre09g2275 Cre-Chr9:41969914 1.20E-73 dispersed
Cre09g2275 Cre-Chr9:41969914 Cre11g0897 Cre-Chr11:6157965 1.30E-65 dispersed
Cre09g2275 Cre-Chr9:41969914 Cre10g1946 Cre-Chr10:34169119 1.40E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54440 PF07526 POX 5.90E-41 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2275 - - - 0.0