Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2296 ATGAAGTTGATGTGTGTAAATTGGCCAGGACACATGCAAGCTATGTTGGTAGAGGGCCTTCATCTCAGGCCGCTTGATGATATTGCATCCTCGGTGGCAAAGTTGAGGTTTAATTGTGTGCGTTTGACATACTCAATCCACATGTTCACACGCTATGCCAATTGGACTGTTCAACAATCCTTTGAGAATTTTGATTTGAAAGAAGCCATGGTAGGCATAGCCCAAAACAATCCTTCTATATTGAACATGACGCTAGTTCAGGCTTATGAAGCAGTGGTTGATTCACTTGCTGCACATGGAGTCATGGTGGTAGCAATGAGTCTGAGAAATGAACCACGAGGACCAAATCAAAACATGGAGATGTGGTTTCAATACATGAGCCAAGGAGCTAAGCTTGTTCACCAAATTAACCCAAATGCTTTAGTAGTGGTTTCTGGATTGAGCTATGATACCGATCTAAGCTTCTTGAAGAACAGGTCGATGGGCTTCAATTTGGATAATAAGCTTGTATTTGAGGCTCATTTGTACTCCTTCACAAACAACATGGGCGATTATTGGATGTCAAAGCCATTAAACACATTTTGTACTAATGTCAACCAAGGATTTGAAGATCGGGCTGGGTTTCTTGCAAGAGGACAAAACCCGATGCCTATCTTTGTGAGTGAGTTTGGGATTGACCAAACAGGTGCAAATGAGGGTCAAAATCGATTCCTAAGTTGCTTCTTTACTTATCTTACTGAGAATGATTTTGATTGGGGCCTATGGGCGTTGCAAGGAATAGATAGCCTTCATATCCCATTCATCTCATTTTTCCAAACCACGAAAATGGCTAAAGCTTTCTCTTTAATCTCTTTAATCTTCTTCTCTTTGTTGGCTCTTTCGCAATCCTTACCTCTCTCCACAAGAGGAAGATGGATTGTAGACTCTCAAACTGGTCAACGTGTGAAGCTGAGTTGTGTCAATTTGGTGTCTCATGCTCAGTCTATGTTGGCACAAGGTCTTGACAAGCGATCATTGAAGGGCTTGGCTAATGATATCAGCAGCCGCGATTTCAACTGCGTGCGGTTGACCTGGTCGATCCACATGTTCACTCGCCACTCTCAGGAGACCATTGGTGACGTCTTTGACGGTCTCGACATCGGAAAGGTCAAAAGTGGAGTTCAAAAACACAACCCTGAGATATTGAACATGACGGTTGCTAATGCATTCAAAACGGTCATTGATGGCTTGGGCAATGCAGGTCTTATGATTGTTCTTGACAACCACATTAGCCAGCCGAGATGGTGTTGCTCACTCAACGATGGCAATGGCTTCTTTGGAGATCGCAATTTTAACCCAATTGAATGGCTTCAAGGCTTGGCCTATGTTGCTAGGCATTTCAGTTGCCGACCCCATGTGATAGGAATGAGCCTAAGAAATGAACTTCGAGGGTCAAAAACAAATGTGGATGTATGGCACAAATATGTGAGAAGAGGAAGCCACTTGATCCACAACATAAACCCTAATCTCCTCGTAGTCATTTCAGGTCTAAATTACGACAACGATCTAAGCCACCTAAAGAAAAAGCCATTAGGGTACAAATTAAACAACAAAGTAGTGTTGGAAGCACATCTATACTCATTCAGTGGGGATCCTGAAAGCAAGTTTGTGAAGAAGCCATTAAACATAGCATGCGAGCAAGTGATGGAGAAATTTGAAAGGGAAGCTGGATTTGTGGTGGACATGGAGGATCCATATCCATTGTGGCTTAGTGAATTTGGGTACGATCAAAGGGGTGTTAACAAGGCTGAAAATAGGTTCATGAGTTGCTTTTTGGCTCGCCTTATTGGCGAGGATATTGATTGGGCTTTGTGGGCTTTCCAAGGAAGCTATATGTATAGGCAAGGCCAAGAAGATCGTGATGAAAGTTTTGGTGTCATGGATAACTCTTGGACTAAAGATAGAAACCCTCAACTCAAACAAATGCTTCAACTTGCCAAAAGAATCAACCAAGGACACATGCAAGCCATGTTGGCAGAGGGTCTTCATCTCAAGCCACTTGATGAAATTGTTGCCTCGGTCGCCAAGTTGAAGTTCAATTGTGTGCGTTTGACATACTCAATTCACATGTTCACACGCTACGCTAATTTGACTGTTCAACAGTCATTTGAGAATTTTGATTTGAAAGAAGCCATGGCAGGCATAGCCCAAAACAATCCTTCTATATTGAACATGACACTTGTTAGGCTTATGAAGCAGTTGTTGATTCGCTTGCTATGCATGGAGTCATGGTAG 2274 42.61 MKLMCVNWPGHMQAMLVEGLHLRPLDDIASSVAKLRFNCVRLTYSIHMFTRYANWTVQQSFENFDLKEAMVGIAQNNPSILNMTLVQAYEAVVDSLAAHGVMVVAMSLRNEPRGPNQNMEMWFQYMSQGAKLVHQINPNALVVVSGLSYDTDLSFLKNRSMGFNLDNKLVFEAHLYSFTNNMGDYWMSKPLNTFCTNVNQGFEDRAGFLARGQNPMPIFVSEFGIDQTGANEGQNRFLSCFFTYLTENDFDWGLWALQGIDSLHIPFISFFQTTKMAKAFSLISLIFFSLLALSQSLPLSTRGRWIVDSQTGQRVKLSCVNLVSHAQSMLAQGLDKRSLKGLANDISSRDFNCVRLTWSIHMFTRHSQETIGDVFDGLDIGKVKSGVQKHNPEILNMTVANAFKTVIDGLGNAGLMIVLDNHISQPRWCCSLNDGNGFFGDRNFNPIEWLQGLAYVARHFSCRPHVIGMSLRNELRGSKTNVDVWHKYVRRGSHLIHNINPNLLVVISGLNYDNDLSHLKKKPLGYKLNNKVVLEAHLYSFSGDPESKFVKKPLNIACEQVMEKFEREAGFVVDMEDPYPLWLSEFGYDQRGVNKAENRFMSCFLARLIGEDIDWALWAFQGSYMYRQGQEDRDESFGVMDNSWTKDRNPQLKQMLQLAKRINQGHMQAMLAEGLHLKPLDEIVASVAKLKFNCVRLTYSIHMFTRYANLTVQQSFENFDLKEAMAGIAQNNPSILNMTLVRLMKQLLIRLLCMESW 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42171240 42178653 + CrPI670011_09g022960.1 Cre09g2296 508964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2296 757 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 665 746 - -
Cre09g2296 757 Gene3D Glycosidases 104 265 - -
Cre09g2296 757 Gene3D Glycosidases 296 665 - -
Cre09g2296 757 SUPERFAMILY (Trans)glycosidases 2 259 IPR017853 -
Cre09g2296 757 Pfam Cellulase (glycosyl hydrolase family 5) 103 258 IPR001547 GO:0000272(InterPro)|GO:0004553(InterPro)
Cre09g2296 757 Pfam Cellulase (glycosyl hydrolase family 5) 338 620 IPR001547 GO:0000272(InterPro)|GO:0004553(InterPro)
Cre09g2296 757 Gene3D Glycosidases 1 103 - -
Cre09g2296 757 SUPERFAMILY (Trans)glycosidases 297 658 IPR017853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2296 K01179 - - csv:101211910 662.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1167 Cre-Chr6:5493871 Cre09g2296 Cre-Chr9:42171240 3.20E-96 dispersed
Cre09g1998 Cre-Chr9:39038637 Cre09g2296 Cre-Chr9:42171240 3.10E-116 dispersed
Cre09g2296 Cre-Chr9:42171240 Cre09g2300 Cre-Chr9:42196259 6.10E-233 dispersed
Cre09g2295 Cre-Chr9:42164778 Cre09g2296 Cre-Chr9:42171240 8.80E-115 tandem
Cre09g2296 Cre-Chr9:42171240 Cre09g2297 Cre-Chr9:42180226 2.00E-74 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g57 . . . . . . . . . . Cma02g01417 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00230 Chy09g01269 . . . . . . . . . . Cmo02g01449 Cmo15g01324 . . . . . . Bhi12g00176 . . Lac11g2036 Hepe06g1504 . Lcy12g1598 Cla01g00217 Cam01g0224 Cec01g0215 Cco01g0223 Clacu01g0219 Cmu01g0212 Cre09g2296 Lsi09g00204 . . Cme09g01810
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000102 1 5 0 0 1 17 0 16 15 11 16 15 7 9 8 11 14 2 0 12 12 11 2 7 10 18 6 7 5 3 241