Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2306 ATGGAAGCTCTGTGGATTTTCAGCTTCGTTGTGGTTCTGGGGTTGGTTTTTTCGCCAATTAATGGCGACCCAGTTGAAGACAAGCGAGCTCTGCTTGATTTTGTCAAGAATCTCCCTCACTCTCGCTCTCTTAATTGGAATGCGGCTTCTCCGGTTTGTCATTACTGGACTGGTATAACTTGCAGTCAAGATGAATCTCGTGTTATAGCCGTTCGGTTGCCCGGAGTTGGCTTTCACGGCCCGATTCCAGCGAATACTCTTAGCCGGCTATCGGCACTGCAAATATTGAGTCTCAGATCCAATCGTATAACGGGGGATTTCCCTTTGGATTTCTCGAATCTTAGTAACTTGTCTTATCTTTATCTTCAGTTCAACAACTTCTCTGGGCCATTGCCTTCCAATTTCTCTGTCTGGAAGAATCTCACCTTTGTGAATCTCTCTAATAATGGCTTCAATGGCCGTATTCCACATTCGCTTTCTAATCTGACAGCACTCACAGGTTTGAATCTGGCGAACAACTCTCTTTCAGGAGAAATACCTGACCTCCAAATCCCCAGATTGCAGGTTTTGGATTTGTCTAACAACAATCTGAGTGGGAGTGTGCCTAAATCTTTACAGAGATTTCCAAAGTCTGTATTTGTAGGCAATGATATATCTTTTGGAAGTTCTTTATTAAACAATCCTCCCGTACCCGCGCCGTTGCCTGTGTCGAATGAAAAGCCAAAGAATGCTGGTGGGCTTGGAGAAGCAGCATTGTTAGGAATTATAATTGCTGGTGGTATTTTGGGGCTTCTGGCATTTGGCTTTCTAATCCTTGTTTGCTTCTCAAGAAGGAAGAGGGAAGATGAATATTCTGGGGATCTTCAGAAAGGTGGAATGTCGCCGGAAAAAGTGATATCAAGGACTCAAGATGCAAACAACAGATTGGTTTTCTTTGAGGGGTGTCATTATGCATTTGACTTGGAGGATTTGTTGAGAGCTTCTGCTGAAGTATTGGGGAAGGGAACTTTTGGTACTGCATATAAAGCAATTCTAGAGGATGCCACCACAGTTGTTGTTAAGAGGTTGAAGGATGTAAGCGCTGGGAAACGCGATTTCGAGCAGCAAATGGAGATTGTTGGCAGTATCAGGCACGAGAATGTGGTTGAATTGAAGGCTTACTATTATTCCAAAGATGAGAAGCTGATGGTTTATGATTTCTTTGGTCAGGGAAGCGTCTCGGCCATGTTACACGGTAAACGCGGAGAGGAAAAAACTCCATTAGATTGGGACACTAGACTGAGAATTGCAGTTGGTGCAGCACGAGGAATCGCCCGTGTCCATGCCGAAAATGGTGGGAAACTCGTCCATGGAAATGTGAAATCCTCAAACATCTTTCTGAACTCTCAACAGTATGGATGTGTGTCTGATCTTGGACTAGCAACTATAACAAGCTCCCTCTCTCCACCTATATCCCGCGCTGCTGGTTACCGAGCCCCAGAAGTGACAGACACTCGCAAGGCGACACAAGCTTCAGATGTTTTCAGCTTCGGTGTCGTGCTCCTCGAACTTCTAACCGGAAAGTCTCCAATTCATGCAACAGGCGGCGAAGAGATTGTTCATTTGGTTAGATGGGTTCATTCAGTTGTCCGAGAGGAGTGGACAGCTGAGGTATTTGATGTAGAGCTGATGAGATATCCCAACATAGAGGAAGAAATGGTTGAGATGTTACAAATAGCCTTATCATGTGTAGCCAGGATACCTGACCAGAGACCCAAAATGGCGGAAATTGTGAAGATGATCGAAAGTGTTCGACCAATGGAAGCCGAGAATCGACCTTCTTCCACGAACCGATCTGAAAGTTTGATGCCGCCGCAAGCTGTTGAGACAGAAAATTCAACCCCTCAGCAAAACAACAAACACGCAGGAGGATCTCAAGAGGTTCAACTCTTTTGGATTTTGGTGATGGCTTCGAAGCGGATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCCTACGTCTTGCAGTGCAGGCCCAGTAGCTGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCTCCTGACAGTCCTTATGCAGGAGGAGTGTTTCTTGTCAACATTCATTTCCCTCCAGATTATCCGTTTAAACCACCCAAGGTTGCATTCAGAACAAAAGTCTTTCATCCCAATATCAACAGCAACGGTAGCATATGCCTCGACATACTTAAGGAACAGTGGAGTCCTGCACTAACCATTTCCAAGGTGTTACTTTCGATCTGCTCACTGCTAACGGACCCGAATCCTGATGATCCTCTGGTGCCAGAGATTGCACACATGTATAAGACTGACAGAAGCAAGTACGAGGCAACCGCCAGAAGCTGGACCCAGAAGTATGCTATGGTGGGTTTAGGTACGTTTCCCTCCTGA 2412 45.56 MEALWIFSFVVVLGLVFSPINGDPVEDKRALLDFVKNLPHSRSLNWNAASPVCHYWTGITCSQDESRVIAVRLPGVGFHGPIPANTLSRLSALQILSLRSNRITGDFPLDFSNLSNLSYLYLQFNNFSGPLPSNFSVWKNLTFVNLSNNGFNGRIPHSLSNLTALTGLNLANNSLSGEIPDLQIPRLQVLDLSNNNLSGSVPKSLQRFPKSVFVGNDISFGSSLLNNPPVPAPLPVSNEKPKNAGGLGEAALLGIIIAGGILGLLAFGFLILVCFSRRKREDEYSGDLQKGGMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVVELKAYYYSKDEKLMVYDFFGQGSVSAMLHGKRGEEKTPLDWDTRLRIAVGAARGIARVHAENGGKLVHGNVKSSNIFLNSQQYGCVSDLGLATITSSLSPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIALSCVARIPDQRPKMAEIVKMIESVRPMEAENRPSSTNRSESLMPPQAVETENSTPQQNNKHAGGSQEVQLFWILVMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMVGLGTFPS 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42322828 42335238 + CrPI670011_09g023060.1 Cre09g2306 508974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2306 803 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Cre09g2306 803 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Cre09g2306 803 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524(InterPro)
Cre09g2306 803 Pfam Ubiquitin-conjugating enzyme 653 789 IPR000608 -
Cre09g2306 803 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 608 - -
Cre09g2306 803 Gene3D Ribonuclease Inhibitor 26 135 IPR032675 -
Cre09g2306 803 Gene3D Ubiquitin Conjugating Enzyme 646 797 IPR016135 -
Cre09g2306 803 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Cre09g2306 803 MobiDBLite consensus disorder prediction 602 636 - -
Cre09g2306 803 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 649 795 IPR000608 -
Cre09g2306 803 CDD UBCc 651 790 IPR000608 -
Cre09g2306 803 PANTHER OS05G0588300 PROTEIN 8 610 IPR050994 -
Cre09g2306 803 MobiDBLite consensus disorder prediction 599 636 - -
Cre09g2306 803 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Cre09g2306 803 FunFam pollen receptor-like kinase 1 295 400 - -
Cre09g2306 803 Gene3D Transferase(Phosphotransferase) domain 1 402 619 - -
Cre09g2306 803 Gene3D Ribonuclease Inhibitor 136 224 IPR032675 -
Cre09g2306 803 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 722 737 IPR023313 -
Cre09g2306 803 SUPERFAMILY L domain-like 37 208 - -
Cre09g2306 803 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515(InterPro)
Cre09g2306 803 SMART ubc_7 652 795 - -
Cre09g2306 803 Gene3D Phosphorylase Kinase; domain 1 293 400 - -
Cre09g2306 803 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2306 803 FunFam Ubiquitin-conjugating enzyme 28, E2 649 796 - -
Cre09g2306 803 Pfam Protein tyrosine and serine/threonine kinase 330 593 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g2306 803 FunFam Probable inactive receptor kinase RLK902 24 183 - -
Cre09g2306 803 SUPERFAMILY UBC-like 644 796 IPR016135 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0769 Cre-Chr2:4536539 Cre09g2306 Cre-Chr9:42322828 1.20E-79 dispersed
Cre02g0897 Cre-Chr2:5978037 Cre09g2306 Cre-Chr9:42322828 3.70E-22 dispersed
Cre04g0600 Cre-Chr4:23280447 Cre09g2306 Cre-Chr9:42322828 9.80E-23 dispersed
Cre05g0186 Cre-Chr5:1882957 Cre09g2306 Cre-Chr9:42322828 1.50E-73 dispersed
Cre05g1050 Cre-Chr5:9722473 Cre09g2306 Cre-Chr9:42322828 3.30E-240 dispersed
Cre05g2623 Cre-Chr5:37294860 Cre09g2306 Cre-Chr9:42322828 2.10E-32 dispersed
Cre06g1905 Cre-Chr6:25845233 Cre09g2306 Cre-Chr9:42322828 4.80E-125 dispersed
Cre07g1239 Cre-Chr7:25893619 Cre09g2306 Cre-Chr9:42322828 1.50E-17 dispersed
Cre09g2306 Cre-Chr9:42322828 Cre09g2442 Cre-Chr9:43779032 1.60E-154 dispersed
Cre11g1808 Cre-Chr11:29670376 Cre09g2306 Cre-Chr9:42322828 1.70E-48 dispersed
Cre02g2604 Cre-Chr2:39305302 Cre09g2306 Cre-Chr9:42322828 2.90E-25 transposed
Cre02g2698 Cre-Chr2:40199849 Cre09g2306 Cre-Chr9:42322828 1.10E-47 transposed
Cre04g0728 Cre-Chr4:25481720 Cre09g2306 Cre-Chr9:42322828 1.70E-201 transposed
Cre06g2675 Cre-Chr6:34262687 Cre09g2306 Cre-Chr9:42322828 5.30E-32 transposed
Cre07g0957 Cre-Chr7:10576467 Cre09g2306 Cre-Chr9:42322828 8.50E-49 transposed
Cre07g1397 Cre-Chr7:28867471 Cre09g2306 Cre-Chr9:42322828 9.60E-37 transposed
Cre09g0997 Cre-Chr9:10229470 Cre09g2306 Cre-Chr9:42322828 1.30E-64 transposed
Cre05g2269 Cre-Chr5:34263258 Cre09g2306 Cre-Chr9:42322828 4.70E-24 transposed
Cre07g1833 Cre-Chr7:33691522 Cre09g2306 Cre-Chr9:42322828 1.20E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64435 PF07714 PK_Tyr_Ser-Thr 2.30E-34 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2306 - - - 0.0