Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2310 ATGGAAGAAATGAGTGAGGATATGACGCTATTGGATGCGACAGAGGATGCACATGTCCAAAATAAGGTCAGGCAAGATGCTCAGGAGAATGAGTATTCGCTGAAACCTGAAAATACCAACATAGTTGAATCACAAGAGATGGTTATACCCGTTGACGGTGGCTATTCACAGGATTATCCTCATGAATTTACAGACATTTTGGAGGGTAAGAATCTGAATAGGTGTAAAAACAATGTGAAATTATCTGATCAACCAGAGTGCAGTCCTCATTGTATGGATGATGCTGGCGTAATGGTTGAAGAGCTAACTGTGAAAAATCACAACGGTTCCAATTTAGCAATTATTGGTCCATCAAACAATAGAGCACGGCTGCTTTCTAGGCATAGTCAGTGGCAACATCTTTACCAGCTGGGAAGTGGTTCAGGAAGTGGGAGTTCACGTATTGATACTTCTTACAAGAACAATGGTCAGGCAGTAACCCCTGGCTTGGAGAATGGTGGGTATACATCTTTTCCTGAGGCTTTTGCTGGAAGAGCCAGTCGTAATGATTGTGGAGAAGAATTGGAAGAAATGAAGGCTACTGACAATAAGGGTGGTGATACTCATGGCAGCATTCGGACCAAGATTCTATCAAAATCAGGGTTTCCTGAATTTTTTGTTAAAAGTACCTTGAAAGGCAAGGGGATCATTCGCAGAGGTGTACAACTGGAGGGCTTTAATGTTGAACATAGAAACCCTAAGAATGCAAGGATTGCTGGGGGTATTACATTGGCATCTGACTCATCATTACAGCCTGATGTTAAGCCTGTCATTCCTGCTTTGTATAGGAAATCTGAGCATAAACATCGGGGTTCTTCTTTAGATGGCATTAGTCTGCGAGAATGGCTTAAAGTTCCCAACCAAAAAGTAAATAAAATTAAATGCTTGTATATATTTAGGCAGGTAGTTGAGCTGGTGGATCGTTCTCATGCACGGGGGGTTTTGTTGCATGACTTACGTCCATCTTCTTTCAGGATGTTGACGACAAATCAGGTGAGGTACTTTGGAACTTTTATTCAAGGGAAAACTTCAGAAAGCCTATTGGTTAAAGACAGTCAGTGTTCAGATAGCCATCTGACTCGGAAAAGGCCATTAGAGCAAGGGAACTTTCCGTCCTTTGGTATATCTCCAAAAAAACAAAAAGATGCACAGAATATGAGTCTTATGGTGCGACACTCTCATTTTCCATTAAAATCTGGTGCCAATCTTGAAACTGCAAATACTAGGGACTGCAATAAGAATGAATTGGAAAATTATAATGAACATTTTGCGGAACAGGGGGGTTGGAACAAGCCTGCTGGCCTTCGTGCATACGATTCTGCCCGGACTTCAATAAGTGACCTATTGGAAGAGACATGGTATGCAAGTCCAGAGGAACTTATTACAGGATGCTGCTCAGCTAAATCAAATATATTCTCTCTTGGTGTTCTTCTTTTTGAGTTACTTGGAAAGTTTGAATCAGATGGTGCACTTGCTGCAGCGATGTCAAATTTACGTGAGAGGATTCTTCCTCCTAACTTTCTAGCCGATAATTTGAAGGAAGTTGGTTTTTGTCTTTGGCTACTTCATCCTGAACCTGCATCTCGTCCGACAATAAGGGAAATTTTAGAATCAGAACTAATTAATGGAATGGCAAATGTTCCGGCAGCAGAGCTTTCAACATCTATTGATGAGGAAGATGCTGAATCAGAGTTATTATTGCAGTTTCTGACATCATTGAATGAGCAAAAGCAGGAACATGCCTCAAAGTTGGTGGAAGACATACGGTATTTAGAATCAGATATTGAAGAGGTCAATAAAAGGCACAGTTCAGCCAAACCCTTGGATAAATCTGGCTTGTCTACTGTGGATGGAAGGGGTGATTTGATCCTTCATGGAGGATATTTAAATTCAGATCTGCGCTCTCAGGTATATAAAATATCACATACCAACGAAGAGAGAATAGCAAAAAATATAAGTCAGCTTGAAAGTGCTTATTTTTCCATGAGATCAAAAGTAAATCCTTCTGAGAATGACTCGGCAATTCGGACAGATAGCGATTTACTGAAAACTCGTGAAAACTGCTATCTACCACAAAAAGATGATGAGAGGAGCCACGGTGATCGTCTAGGTGCCTTTTTTGATGGGTTCTGCAAGTATTCTCGTTATAGCAAGTTTGAGGTACGTGGAGTACTGAGAAATGGTGATTTTAACAGTTCCTCGAATGTAATCTGTTCCTTAAGTTTTGATCGGGATGAGGACTATTTTGCTGCTGCTGGAGTGTCAAAGAAAATAAGGATTTTTGAGTTTAACTCACTCTTTAGTGACTCGGTAGATATTCACTATCCCGCAGTTGAAATGTTTAATAGATCAAAGCTTAGCTGTATTTGCTGGAATAGCTACATCAAGAACTATCTGGCTTCAACTGATTATGATGGTGTTGTTAAGTTATGGGATGCAACTGTAGGTCAAGAGGTTTCTCAATTCAATGAACACACTAAGAGGGCATGGTCTGTTGACTTTTCACAAGTGCATCCTACAAAATTGGCCAGTGGCAGTGATGATTGTGCTGTAAAACTTTGGAGTATTAATGAGAAGAACTGTTTGGGCACAATTTGGAACATAGCAAACGTCTGCTGTGTTCAGTTCTCTGCTCACTCAACTCATTTGCTGGCTTTTGGGTCTGCCGATTACAGAACCTATTGCTTTGATCTACGCAATACTAAAGCCCCTTGGTGTGTGTTGGGTGGCCACGAGAAAGCTGTAAGCTATGTGAAGTTCTTGGACTCAGGGACCCTTGTTTCTGCATCCACAGACAACACGTTGAAGCTATGGGATCTTAATAGAACCAATCCTACTGGCTTGTCTACCAATGCTTGCAGTCTAACTCTCAGTGGCCACACTAATGAAAAGAATTTCGTGGGCCTATCAGTTTCCAATGGCTACATTGCTTGTGGTTCAGAAACAAATGAAGTATATGCTTACCATAGATCTCTGCCCATGCCAATGACTTCCTATAAGTTTGGTTCTATCGACCCTATTTCTGGAAAAGAGACCGAGGACGACAATGGACAGTTTGTTTCGAGTGTATGCTGGAGAGAAAAATCCGACATGGTTATTGCAGCCAACTCAACTCGTGGATTTGACAGAATATTTGAAGCCCAATTCTGA 3189 41.08 MEEMSEDMTLLDATEDAHVQNKVRQDAQENEYSLKPENTNIVESQEMVIPVDGGYSQDYPHEFTDILEGKNLNRCKNNVKLSDQPECSPHCMDDAGVMVEELTVKNHNGSNLAIIGPSNNRARLLSRHSQWQHLYQLGSGSGSGSSRIDTSYKNNGQAVTPGLENGGYTSFPEAFAGRASRNDCGEELEEMKATDNKGGDTHGSIRTKILSKSGFPEFFVKSTLKGKGIIRRGVQLEGFNVEHRNPKNARIAGGITLASDSSLQPDVKPVIPALYRKSEHKHRGSSLDGISLREWLKVPNQKVNKIKCLYIFRQVVELVDRSHARGVLLHDLRPSSFRMLTTNQVRYFGTFIQGKTSESLLVKDSQCSDSHLTRKRPLEQGNFPSFGISPKKQKDAQNMSLMVRHSHFPLKSGANLETANTRDCNKNELENYNEHFAEQGGWNKPAGLRAYDSARTSISDLLEETWYASPEELITGCCSAKSNIFSLGVLLFELLGKFESDGALAAAMSNLRERILPPNFLADNLKEVGFCLWLLHPEPASRPTIREILESELINGMANVPAAELSTSIDEEDAESELLLQFLTSLNEQKQEHASKLVEDIRYLESDIEEVNKRHSSAKPLDKSGLSTVDGRGDLILHGGYLNSDLRSQVYKISHTNEERIAKNISQLESAYFSMRSKVNPSENDSAIRTDSDLLKTRENCYLPQKDDERSHGDRLGAFFDGFCKYSRYSKFEVRGVLRNGDFNSSSNVICSLSFDRDEDYFAAAGVSKKIRIFEFNSLFSDSVDIHYPAVEMFNRSKLSCICWNSYIKNYLASTDYDGVVKLWDATVGQEVSQFNEHTKRAWSVDFSQVHPTKLASGSDDCAVKLWSINEKNCLGTIWNIANVCCVQFSAHSTHLLAFGSADYRTYCFDLRNTKAPWCVLGGHEKAVSYVKFLDSGTLVSASTDNTLKLWDLNRTNPTGLSTNACSLTLSGHTNEKNFVGLSVSNGYIACGSETNEVYAYHRSLPMPMTSYKFGSIDPISGKETEDDNGQFVSSVCWREKSDMVIAANSTRGFDRIFEAQF 1062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42379716 42385939 - CrPI670011_09g023100.1 Cre09g2310 508978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2310 1062 Gene3D - 719 1056 IPR015943 GO:0005515(InterPro)
Cre09g2310 1062 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 718 1059 - -
Cre09g2310 1062 SMART serkin_6 182 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2310 1062 ProSiteProfiles Protein kinase domain profile. 131 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2310 1062 ProSiteProfiles Trp-Asp (WD) repeats profile. 921 961 IPR001680 GO:0005515(InterPro)
Cre09g2310 1062 PANTHER PROTEIN SPA1-RELATED 2 11 1051 IPR044630 GO:0009640(InterPro)
Cre09g2310 1062 SUPERFAMILY Protein kinase-like (PK-like) 289 559 IPR011009 -
Cre09g2310 1062 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 921 954 - -
Cre09g2310 1062 SMART WD40_4 871 910 IPR001680 GO:0005515(InterPro)
Cre09g2310 1062 SMART WD40_4 963 1002 IPR001680 GO:0005515(InterPro)
Cre09g2310 1062 SMART WD40_4 914 952 IPR001680 GO:0005515(InterPro)
Cre09g2310 1062 SMART WD40_4 787 825 IPR001680 GO:0005515(InterPro)
Cre09g2310 1062 SMART WD40_4 731 775 IPR001680 GO:0005515(InterPro)
Cre09g2310 1062 SMART WD40_4 828 868 IPR001680 GO:0005515(InterPro)
Cre09g2310 1062 SUPERFAMILY WD40 repeat-like 745 1051 IPR036322 GO:0005515(InterPro)
Cre09g2310 1062 PRINTS G protein beta WD-40 repeat signature 939 953 IPR020472 -
Cre09g2310 1062 PRINTS G protein beta WD-40 repeat signature 855 869 IPR020472 -
Cre09g2310 1062 PRINTS G protein beta WD-40 repeat signature 812 826 IPR020472 -
Cre09g2310 1062 ProSitePatterns Trp-Asp (WD) repeats signature. 939 953 IPR019775 -
Cre09g2310 1062 ProSiteProfiles Trp-Asp (WD) repeats profile. 810 834 IPR001680 GO:0005515(InterPro)
Cre09g2310 1062 Gene3D Transferase(Phosphotransferase) domain 1 289 562 - -
Cre09g2310 1062 Coils Coil 594 614 - -
Cre09g2310 1062 ProSiteProfiles Trp-Asp (WD) repeats profile. 835 877 IPR001680 GO:0005515(InterPro)
Cre09g2310 1062 Pfam WD domain, G-beta repeat 920 952 IPR001680 GO:0005515(InterPro)
Cre09g2310 1062 Pfam WD domain, G-beta repeat 799 825 IPR001680 GO:0005515(InterPro)
Cre09g2310 1062 Pfam WD domain, G-beta repeat 830 868 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2310 K16240 - - csv:101211350 1984.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1275 Cre-Chr9:17965678 Cre09g2310 Cre-Chr9:42379716 2.40E-44 dispersed
Cre09g2310 Cre-Chr9:42379716 Cre11g2206 Cre-Chr11:33781215 7.40E-160 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g105 . . . . . . . Bma14g00626 . . Cma02g01396 Cma15g01269 Car02g01175 Car15g01144 . . Cpe05g00378 . . . . . . . . . . . . . . Cone8ag0255 Cone12ag0261 . . . Csa05g00216 Chy09g01283 . . . Bda07g00466 . . Bpe11g00642 . . . Cmo02g01431 Cmo15g01339 . . . . . Cpe13g00119 Bhi12g00161 . . Lac11g2015 Hepe06g1490 . Lcy12g1581 Cla01g00199 Cam01g0205 Cec01g0199 Cco01g0204 Clacu01g0201 Cmu01g0197 Cre09g2310 Lsi09g00187 . . Cme09g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005844 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 39