Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2311 GCGTTTCAATGGAATCGATCTGATTTAGAGTATTGGGTTTTGGATTTTAGCTTCGTTAGATACGGTTTTGAACTGGGCATTGGCGATCTTGTTGTTTCAGAGATAAAAGTGGGGAAAAGGAAGACCATGAAGTTCAATTGGAAGCTACCGTTTCCTTTCAAACGCAACCATGTACTGATTTTGAAGCTTGTTCTTCCTATTCTCTTACTGGGTATTGCTTTTCGTTTCCTCTTCGCTGGTTCCGGTGACGTTCCGGCGATTTTAGAAACCCCTTTGACAGAGAGGATGGCGGCGCCGACGATATTGGAAACCCCTTCAATTGAGAAGAATGACGTTCCTGCGATTTTGGAAGCTCCTTTGTCTAAGAAGACTGAGGATTTGCAGGCACCAGAAATTCCGGAGGTTGAAAATCAGAAACCACTTGAAGGGAAGTGTAATTTTTTTGTTGGAGAGTGGATTCCAAATCCATCAGGTCCTGTGTACAATAATGAGAGCTGCCCCCATATTGAAGCCCATCAAAATTGTATGAAGAATGGGCGGCCAGATACTGAATACCTATACTGGAGATGGAAGCCACGGGATTGCGAACTACCGAAGTTTGATCCACAAAGATTTCTTGAGATGATGAGGGACAAAACATGGGCGTTGATAGGAGATTCAATATCTCGAAACCATGTTCAATCATTGCTGTGCATGCTATCAACGGTGGAAGTAGCAGTTCATATCTACCACGATGAAGGATACAAGTCTAGAAAATGGAGGTTTCCATCATACAACTTCACTGTTTCAGTTGTTTGGTCACCTTTCCTTGCAGAAGCTGCTATATTTGAAGATTATAATGGTGTGTCTACATCTGAAGTTGAGCTGCATCTCGACAAACTTGATAAGAAATGGACAGACGAGTTCCATCAAATGGACTACATGATCATTTCTAGTGGTAAATGGTTTGTGAAACCTGCAATATACTATGAGAATAACAAAGTGCTGGGCTGCCATTATTGCCCAAAAAAGAATTATACAGAGCTAGGTATTGAATTTGCCTACCGCAGATCGCTCCGATCTGCATTAAACTTTATTATAGCATCCAAGCATAAGGGTATGATATTTATGAGAACATCAACCCCTGACCACTTCGAAAATGGTGAATGGTCTAACGGAGGGACATGCGATCAAAGGGCGCCAATAAAAGAAGGTGAGATTGAATTGAAAGAACTGACCAAGATTCTGCGCATTGTCGAGTTAGAGGAGTTTAAGAAGGCAGAAGCAAAAGCGTCTCAAAACGGGTTGAATCTTAAGCTTCTTGACTTGACCCAGCTTTCATTGTTGAGGCCCGATGGGCATCCAGGTCCATACAGAGAGTTCCAACCATTTGCAAATGACAAAAATGCAAAAGTGCAGAAGGATTGCTTGCATTGGTGCCTACCCGGACCGATTGACTCGTGGAATGACGTGATTATGGAGATGGTGTTGAACGGATAG 1479 42.6 AFQWNRSDLEYWVLDFSFVRYGFELGIGDLVVSEIKVGKRKTMKFNWKLPFPFKRNHVLILKLVLPILLLGIAFRFLFAGSGDVPAILETPLTERMAAPTILETPSIEKNDVPAILEAPLSKKTEDLQAPEIPEVENQKPLEGKCNFFVGEWIPNPSGPVYNNESCPHIEAHQNCMKNGRPDTEYLYWRWKPRDCELPKFDPQRFLEMMRDKTWALIGDSISRNHVQSLLCMLSTVEVAVHIYHDEGYKSRKWRFPSYNFTVSVVWSPFLAEAAIFEDYNGVSTSEVELHLDKLDKKWTDEFHQMDYMIISSGKWFVKPAIYYENNKVLGCHYCPKKNYTELGIEFAYRRSLRSALNFIIASKHKGMIFMRTSTPDHFENGEWSNGGTCDQRAPIKEGEIELKELTKILRIVELEEFKKAEAKASQNGLNLKLLDLTQLSLLRPDGHPGPYREFQPFANDKNAKVQKDCLHWCLPGPIDSWNDVIMEMVLNG 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42400654 42403370 + CrPI670011_09g023110.1 Cre09g2311 508979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2311 492 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 74 487 IPR029962 GO:0005794(PANTHER)|GO:0016413(PANTHER)|GO:0016413(InterPro)
Cre09g2311 492 Pfam PMR5 N terminal Domain 144 196 IPR025846 -
Cre09g2311 492 Coils Coil 395 415 - -
Cre09g2311 492 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 197 488 IPR026057 GO:0016740(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2311 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0921 Cre-Chr9:9283076 Cre09g2311 Cre-Chr9:42400654 1.60E-142 dispersed
Cre09g2311 Cre-Chr9:42400654 Cre11g1010 Cre-Chr11:7411604 2.30E-95 dispersed
Cre09g2311 Cre-Chr9:42400654 Cre05g2676 Cre-Chr5:37728826 4.00E-92 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g111 . . . . . . Bma07g01681 . . . Cma02g01395 Cma15g01270 Car02g01174 Car15g01145 . . Cpe05g00379 . . . . . . . . . . . . . . Cone8ag0253 . . . . Csa05g00214 Chy09g01285 . . . Bda07g00465 Bda09g00018 . Bpe11g00641 . . . Cmo02g01430 Cmo15g01340 . . . . . Cpe13g00118 Bhi12g00160 . . Lac11g2012 Hepe06g1489 . . Cla01g00198 Cam01g0204 Cec01g0198 Cco01g0203 Clacu01g0200 Cmu01g0196 Cre09g2311 Lsi09g00186 . . Cme09g01829
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004213 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 4 1 43