Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g2333 | ATGTTGCCTGCTACGAAGCAGACAACGAAAGGGACGACGCGCGCCAAGCCGTTTCGCGATTCTTTTTCTTTTCTTGTTTTTGTGACGGCGTTTTTCTCCCTCGACGAGCGACAGAGAGGATCGGCGGTTGATTTTCGAGCGGTTTCTGTCACCGGTGCAGTGACGAAGGAGTTTCAGATTTTGGAGGTATTTGTCTCTGTATATCTCTCTGTGGAGGAAGGAATTGGAATTAGTGATTTCTTGATAGGTTGTGGAAGAGATGATATGTATATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATGTCCCTCGCGTTGATGAGAGAGTTTTCTATTTCCCTCAGGGCCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTGCTTCAAAGATTCTATGTCGTGTAATTCATATTGAGCCGCTGGCAGATCATGAATCGGATGAGGTTTATGCACAAATAACTTTAATGCCGGAATCAGATCAAACTGAGCCTAAAAGTATGGATCCATGTCCTCCTGAACCAGCTAGACCAGTTGTTCATTCGTTCTGCAAGGTTTTAACTGCTTCTGACACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTACTGAGTGCCTACCTCCTTTGGACATGACTCTGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTACATGGATATGAATGGCGATTCAAGCATATTTTCAGAGGACAGCCACGAAGGCACCTGCTGACAACTGGGTGGAGTACATTTGTTACTTCTAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGGGAGACAATGGAGAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCGACAGCAAAGCAGCATGCCACCATCTGTTATATCGAGTCAGAGCATGCACCTAGGGGTGCTCGCAACTGCATCTCATGCTGTTACAACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAACTTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGCAGATATTTCACCTCATTGGCCTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAACAAACATCTATTATGAGACCTGACAGGGTATCACCTTGGGATATAGAACCACTCACGTCTTCAGCAGTCACAGGTCTATCTCAGCCTGTTTCAAAAAACAAAAGGCCTCGACAACCGACTCCAGCTCATGATGGTGCTGATTTGACTAAGCCAGGACATTGGGATTCTGGATTGGCACAGCCACATGATGGTAAACAATGTAGTAATGCAGCTGAAAGCAGAAAAGGTGAAAATAATGAATTGTGCCACCATAGAGAGACAGATACCATCAGCAACAGTTCATGTGTATCAAGAGCACAGACTGATACCTGGCTATCTCCTACCCAATCCAATAGTTATAAACACCCAGTACATGACATGGCGCAGGATTATAAAACTGTCCCTGGCGTTGGTTGGTCCTTTCTGTTAGGAACTTCAACCTCTCATTTGGTTAAGTTAAGTGATGATCAACAAATACTGGACCCCACTGAAAATGGGAGGAACGGCGAAACAGTAGCTAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTAGCTGCTGAGAAAGAACCTTCTCAACCAAGCAGTGTGTCTTGCGACACAGATGGGCGCATCAGTACCTTGTCAGTGGCTCAGTCCGATCCAAAATCTGACAACTTGGAGGTATCTATAGAAAGAAAATCAGAACCATCGCAGGCATCTCTGAAGGAGATTCAATGCAATCAAAGTAGCTCATCTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGGATGGCCGTGGGTAGGGCAGTGGACTTAACCATCTTAGAAGGCTATGACCAACTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATTGTATATACTGACGATGAAGGGGATATGATGCTTGTTGGAGATGACCCATGGGAAGAATTCTGTAACATGGTGAGAAGAATTTTCATATGCTCTAGGGAGCAAGTGAAAAACATGGGCTCAGGAAGCAAGCAGCTGACCCCACTAGAAGTTGAAGGGGCTGTAGTAATCCCGGATTCCCCTGCACTATCTGAAGATCACGATGCCTGGCTAGCTGTCAAGAACAATGGGAGGTTGCAAAAAGCTTGTTGA | 2334 | 45.03 | MLPATKQTTKGTTRAKPFRDSFSFLVFVTAFFSLDERQRGSAVDFRAVSVTGAVTKEFQILEVFVSVYLSVEEGIGISDFLIGCGRDDMYMELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLFNLASKILCRVIHIEPLADHESDEVYAQITLMPESDQTEPKSMDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGELRVGVRRRARQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNNFSVGMRFNMSFEGEDSPERRFSGTIIGAADISPHWPNSSWRSLRVQWDEQTSIMRPDRVSPWDIEPLTSSAVTGLSQPVSKNKRPRQPTPAHDGADLTKPGHWDSGLAQPHDGKQCSNAAESRKGENNELCHHRETDTISNSSCVSRAQTDTWLSPTQSNSYKHPVHDMAQDYKTVPGVGWSFLLGTSTSHLVKLSDDQQILDPTENGRNGETVASCRLFGIDLNHLAAEKEPSQPSSVSCDTDGRISTLSVAQSDPKSDNLEVSIERKSEPSQASLKEIQCNQSSSSNTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKNMGSGSKQLTPLEVEGAVVIPDSPALSEDHDAWLAVKNNGRLQKAC | 777 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 42605333 | 42612434 | - | CrPI670011_09g023330.1 | Cre09g2333 | 509001 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g2333 | 777 | ProSiteProfiles | PB1 domain profile. | 646 | 727 | IPR053793 | - | |
Cre09g2333 | 777 | Gene3D | - | 355 | 428 | - | - | |
Cre09g2333 | 777 | FunFam | Auxin response factor | 192 | 296 | - | - | |
Cre09g2333 | 777 | Pfam | Auxin response factor | 320 | 398 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cre09g2333 | 777 | SUPERFAMILY | CAD & PB1 domains | 641 | 722 | - | - | |
Cre09g2333 | 777 | ProSiteProfiles | B3 DNA-binding domain profile. | 194 | 296 | IPR003340 | GO:0003677(InterPro) | |
Cre09g2333 | 777 | MobiDBLite | consensus disorder prediction | 425 | 476 | - | - | |
Cre09g2333 | 777 | MobiDBLite | consensus disorder prediction | 425 | 439 | - | - | |
Cre09g2333 | 777 | MobiDBLite | consensus disorder prediction | 585 | 617 | - | - | |
Cre09g2333 | 777 | Gene3D | - | 641 | 734 | - | - | |
Cre09g2333 | 777 | Pfam | B3 DNA binding domain | 194 | 295 | IPR003340 | GO:0003677(InterPro) | |
Cre09g2333 | 777 | Pfam | AUX/IAA family | 692 | 725 | IPR033389 | - | |
Cre09g2333 | 777 | Pfam | AUX/IAA family | 636 | 682 | IPR033389 | - | |
Cre09g2333 | 777 | CDD | B3_DNA | 192 | 294 | IPR003340 | GO:0003677(InterPro) | |
Cre09g2333 | 777 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 88 | 735 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cre09g2333 | 777 | MobiDBLite | consensus disorder prediction | 586 | 615 | - | - | |
Cre09g2333 | 777 | FunFam | Auxin response factor | 355 | 426 | - | - | |
Cre09g2333 | 777 | FunFam | Auxin response factor | 641 | 734 | - | - | |
Cre09g2333 | 777 | Gene3D | - | 191 | 296 | IPR015300 | - | |
Cre09g2333 | 777 | SUPERFAMILY | DNA-binding pseudobarrel domain | 185 | 323 | IPR015300 | - | |
Cre09g2333 | 777 | SMART | B3_2 | 194 | 296 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre07g1510 | Cre-Chr7:30378920 | Cre09g2333 | Cre-Chr9:42605333 | 2.10E-224 | dispersed | |
Cre09g2333 | Cre-Chr9:42605333 | Cre11g0526 | Cre-Chr11:2250320 | 4.10E-176 | dispersed | |
Cre09g2333 | Cre-Chr9:42605333 | Cre09g0908 | Cre-Chr9:9117104 | 2.10E-204 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54444 | PF02309 | AUX_IAA | 1.90E-12 | CL0072 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g2333 | K14486 | - | csv:101209208 | 1269.99 |