Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2333 ATGTTGCCTGCTACGAAGCAGACAACGAAAGGGACGACGCGCGCCAAGCCGTTTCGCGATTCTTTTTCTTTTCTTGTTTTTGTGACGGCGTTTTTCTCCCTCGACGAGCGACAGAGAGGATCGGCGGTTGATTTTCGAGCGGTTTCTGTCACCGGTGCAGTGACGAAGGAGTTTCAGATTTTGGAGGTATTTGTCTCTGTATATCTCTCTGTGGAGGAAGGAATTGGAATTAGTGATTTCTTGATAGGTTGTGGAAGAGATGATATGTATATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATGTCCCTCGCGTTGATGAGAGAGTTTTCTATTTCCCTCAGGGCCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTGCTTCAAAGATTCTATGTCGTGTAATTCATATTGAGCCGCTGGCAGATCATGAATCGGATGAGGTTTATGCACAAATAACTTTAATGCCGGAATCAGATCAAACTGAGCCTAAAAGTATGGATCCATGTCCTCCTGAACCAGCTAGACCAGTTGTTCATTCGTTCTGCAAGGTTTTAACTGCTTCTGACACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTACTGAGTGCCTACCTCCTTTGGACATGACTCTGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTACATGGATATGAATGGCGATTCAAGCATATTTTCAGAGGACAGCCACGAAGGCACCTGCTGACAACTGGGTGGAGTACATTTGTTACTTCTAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGGGAGACAATGGAGAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCGACAGCAAAGCAGCATGCCACCATCTGTTATATCGAGTCAGAGCATGCACCTAGGGGTGCTCGCAACTGCATCTCATGCTGTTACAACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAACTTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGCAGATATTTCACCTCATTGGCCTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAACAAACATCTATTATGAGACCTGACAGGGTATCACCTTGGGATATAGAACCACTCACGTCTTCAGCAGTCACAGGTCTATCTCAGCCTGTTTCAAAAAACAAAAGGCCTCGACAACCGACTCCAGCTCATGATGGTGCTGATTTGACTAAGCCAGGACATTGGGATTCTGGATTGGCACAGCCACATGATGGTAAACAATGTAGTAATGCAGCTGAAAGCAGAAAAGGTGAAAATAATGAATTGTGCCACCATAGAGAGACAGATACCATCAGCAACAGTTCATGTGTATCAAGAGCACAGACTGATACCTGGCTATCTCCTACCCAATCCAATAGTTATAAACACCCAGTACATGACATGGCGCAGGATTATAAAACTGTCCCTGGCGTTGGTTGGTCCTTTCTGTTAGGAACTTCAACCTCTCATTTGGTTAAGTTAAGTGATGATCAACAAATACTGGACCCCACTGAAAATGGGAGGAACGGCGAAACAGTAGCTAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTAGCTGCTGAGAAAGAACCTTCTCAACCAAGCAGTGTGTCTTGCGACACAGATGGGCGCATCAGTACCTTGTCAGTGGCTCAGTCCGATCCAAAATCTGACAACTTGGAGGTATCTATAGAAAGAAAATCAGAACCATCGCAGGCATCTCTGAAGGAGATTCAATGCAATCAAAGTAGCTCATCTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGGATGGCCGTGGGTAGGGCAGTGGACTTAACCATCTTAGAAGGCTATGACCAACTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATTGTATATACTGACGATGAAGGGGATATGATGCTTGTTGGAGATGACCCATGGGAAGAATTCTGTAACATGGTGAGAAGAATTTTCATATGCTCTAGGGAGCAAGTGAAAAACATGGGCTCAGGAAGCAAGCAGCTGACCCCACTAGAAGTTGAAGGGGCTGTAGTAATCCCGGATTCCCCTGCACTATCTGAAGATCACGATGCCTGGCTAGCTGTCAAGAACAATGGGAGGTTGCAAAAAGCTTGTTGA 2334 45.03 MLPATKQTTKGTTRAKPFRDSFSFLVFVTAFFSLDERQRGSAVDFRAVSVTGAVTKEFQILEVFVSVYLSVEEGIGISDFLIGCGRDDMYMELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLFNLASKILCRVIHIEPLADHESDEVYAQITLMPESDQTEPKSMDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGELRVGVRRRARQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNNFSVGMRFNMSFEGEDSPERRFSGTIIGAADISPHWPNSSWRSLRVQWDEQTSIMRPDRVSPWDIEPLTSSAVTGLSQPVSKNKRPRQPTPAHDGADLTKPGHWDSGLAQPHDGKQCSNAAESRKGENNELCHHRETDTISNSSCVSRAQTDTWLSPTQSNSYKHPVHDMAQDYKTVPGVGWSFLLGTSTSHLVKLSDDQQILDPTENGRNGETVASCRLFGIDLNHLAAEKEPSQPSSVSCDTDGRISTLSVAQSDPKSDNLEVSIERKSEPSQASLKEIQCNQSSSSNTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKNMGSGSKQLTPLEVEGAVVIPDSPALSEDHDAWLAVKNNGRLQKAC 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42605333 42612434 - CrPI670011_09g023330.1 Cre09g2333 509001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2333 777 ProSiteProfiles PB1 domain profile. 646 727 IPR053793 -
Cre09g2333 777 Gene3D - 355 428 - -
Cre09g2333 777 FunFam Auxin response factor 192 296 - -
Cre09g2333 777 Pfam Auxin response factor 320 398 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre09g2333 777 SUPERFAMILY CAD & PB1 domains 641 722 - -
Cre09g2333 777 ProSiteProfiles B3 DNA-binding domain profile. 194 296 IPR003340 GO:0003677(InterPro)
Cre09g2333 777 MobiDBLite consensus disorder prediction 425 476 - -
Cre09g2333 777 MobiDBLite consensus disorder prediction 425 439 - -
Cre09g2333 777 MobiDBLite consensus disorder prediction 585 617 - -
Cre09g2333 777 Gene3D - 641 734 - -
Cre09g2333 777 Pfam B3 DNA binding domain 194 295 IPR003340 GO:0003677(InterPro)
Cre09g2333 777 Pfam AUX/IAA family 692 725 IPR033389 -
Cre09g2333 777 Pfam AUX/IAA family 636 682 IPR033389 -
Cre09g2333 777 CDD B3_DNA 192 294 IPR003340 GO:0003677(InterPro)
Cre09g2333 777 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 88 735 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre09g2333 777 MobiDBLite consensus disorder prediction 586 615 - -
Cre09g2333 777 FunFam Auxin response factor 355 426 - -
Cre09g2333 777 FunFam Auxin response factor 641 734 - -
Cre09g2333 777 Gene3D - 191 296 IPR015300 -
Cre09g2333 777 SUPERFAMILY DNA-binding pseudobarrel domain 185 323 IPR015300 -
Cre09g2333 777 SMART B3_2 194 296 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1510 Cre-Chr7:30378920 Cre09g2333 Cre-Chr9:42605333 2.10E-224 dispersed
Cre09g2333 Cre-Chr9:42605333 Cre11g0526 Cre-Chr11:2250320 4.10E-176 dispersed
Cre09g2333 Cre-Chr9:42605333 Cre09g0908 Cre-Chr9:9117104 2.10E-204 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54444 PF02309 AUX_IAA 1.90E-12 CL0072 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2333 K14486 - csv:101209208 1269.99