Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2345 ATGGAAATGGAAGAACTATACAACTATATATTCTTTGCCTCCGCATCTGGTAACTCCTCTGGAAAGAAGAGTCCAAAGAGAGGAAGAGCCCCAGATGGGTTTGACCCGATTTTTGGGGTGACCCAGTCAGGATGCCATGGATTTGAATCGAAGAGGAGGGGTCAAGAGAGAGAACAGATGATGGATTTGATTTACTGTGAGGAGGAAATTGAAAGATTCTACGACACCCGTGAGGAGATCTCCTCTGTGTCTGATTGGGGATCTGATTGCTCTGAGAACTGCAGCACAAGCTTTGGGGATGACGGTGATATTCCTGAAAGTTTAAGATATGTGGGATGGATAGGTAATCTGGAAAGTGTTTGTGAGCGAAGAAACAAGTTCTTCAAATGGATGGGTTTGGATTTGGATCAGACTTTTGACGACAGAGATGAAGAGGAAGGGGATTCGTTTGGGAGGGTTTATCGTGATAGAATTCTGGAAGATTGTGGAACGGTGTTGAGACTTTCCGGTTCTGAAGAGGAGTTGTCTTCAAGTCTTACTATGTCTTCCATGTCAAATGAAGCTCCAGAATCATCAGGAAATGTTTCGGTGGAGGAGAATCATGTTTATACTATCAGGAATTTGGACAATGGGACTGAGTTTATTGTGGATAGTTTCAGTCAAGATGGAGTGTTGAGCATGTTACGTGAAGTTGGTTCAAACCGATCCTTCAGTTTTGATGAGTTTGAGAGAAACATTGGACAGTCTCCCTTGGTTCAGCAATTCTTTCGCAAAAATGTTGAAAAGGCTGGGCCTATAGTCAATGCCAGGAAAGAGGCAAAGAAGGGTTGGCTGAGAAAATTGGGTGCGGTTGCTTGTATAGTTGACAATGGGGTGGGCGCAATGAAAAACGGTGTTTCCAATTCTTCATCTAAGGCAGGGATACAACAAGTTCGCGTTCATCCATATAAAAAGCAATCCAAAGAATTATCATCCCTTTTTGTGGGACAAGAATTTGAAGCACACAAAGGGTCAATTTCTACAATGAAGTTCAGTTTTGATGGAAGGTACTTGGCTACTGCTGGTGAAGATGGTGTTGTGCGTGTATGGCAGGTGATTGAAGATGTGAGATTCGATAATTTCGACATTCACAATGTTGATCCTTCCTCTTTGTACTTCTCAATGAATCATTTGTCCAAATTAGACCCCTTGGATGTACCAAAAGAGACTGTAGGCAAGACGAAATTGAAGAGATCATCAAGCACAGCCTGTGTAATTTTTCCACCAAAGCTATTTAGGATATTGGAGAAACCTCTGCATGAGTTCTTGGGACACAGTGGCGAGGTCTTGGATCTATCTTGGTCAAAGAAAGGGCTTCTGCTGTCATCTTCTGTTGATAAGACAGTACGTCTTTGGCAGCTGGGATGTGACACATGCCTAAGAGTTTACTGTCATAATAATTATGTTACGTGCGTTAGTTTCAATCCTATAGATGAAAATCATTTCATAAGTGGCTCAATAGACGGTAAAGTTCGGATTTGGGAAGTTCTTGCTTGTCAAGTGGTTGATTATATCGATATCCGTGAGATAGTAAGTGCAGTCTGTTACAGACCGGATGGAAAGGGAGGAATTGTGGGGTCCATGACTGGAAACTGCCGTTTTTATAATATTATAGATAATCGATTGGAGCTGGATGCTCAGATATGCTTAAATGGGAAAAAGAAGTCGCCTGGGAAGAGAATAATTGGTTTTGAGTTTTCTCCTAGCGACCCGAGTAAACTAATGGTCTGTTCTGTTGATTCGCCGGTTCATATAATCTCCGGGAGTGATGTCATTTGCAAATTCAAGGGTCTTCGTAATGGTGGAAACAAGATGTCTGCTTCTTTTACCTCGGATGGAAAGCATATTGTTTCAGCCAGTGAAGAAAACGTCTACGTTTGGAACTACAATTGCAAGGACAAAGCATCTCGGAAAAAGAAAATTTGGTCGTCCGAAAGTTTCTTCTCTCGTAGCGCGTCAATAGCCATACCTTGGTCTGGTGTGAAAATCACACCTGAACCACCACTGTCCCCAACACGAGTTTGCGATACAGCGGGAAGTATCCCCGAAATGGAGCCGAAGTATCCTGATGACGATGGTGATAGAGAACACAAGGTTCCGTCATCATCACCAGATTGCTTCTCTCTAAGTCGCACTCTTTTTCCCGAGTTGCTCAAAGGAACTGCAACTTGGCCGGAGGAGAAACTCCATGATTCTAGCTCAATGATCCCTTCCCCTTCAATGTGCAAGACTGAGTTCAAGTTTTTGAAGAATGCTTGCCAGAGCATGCTTAGCTCTCCGCACATGTGGGGTCTTGTGATCGTAACTGCTGGATGGGACGGACGAATCAGAACATTTCTCAACTACGGTTGTCGAGATATCGAGATTAATCTGGAAGGGGATGTCGGGATAATACAGAGGCATCTATCTGGTGGGGCTTTTGCTTTGCCTGTCCCTAAATATGGATAA 2487 43.22 MEMEELYNYIFFASASGNSSGKKSPKRGRAPDGFDPIFGVTQSGCHGFESKRRGQEREQMMDLIYCEEEIERFYDTREEISSVSDWGSDCSENCSTSFGDDGDIPESLRYVGWIGNLESVCERRNKFFKWMGLDLDQTFDDRDEEEGDSFGRVYRDRILEDCGTVLRLSGSEEELSSSLTMSSMSNEAPESSGNVSVEENHVYTIRNLDNGTEFIVDSFSQDGVLSMLREVGSNRSFSFDEFERNIGQSPLVQQFFRKNVEKAGPIVNARKEAKKGWLRKLGAVACIVDNGVGAMKNGVSNSSSKAGIQQVRVHPYKKQSKELSSLFVGQEFEAHKGSISTMKFSFDGRYLATAGEDGVVRVWQVIEDVRFDNFDIHNVDPSSLYFSMNHLSKLDPLDVPKETVGKTKLKRSSSTACVIFPPKLFRILEKPLHEFLGHSGEVLDLSWSKKGLLLSSSVDKTVRLWQLGCDTCLRVYCHNNYVTCVSFNPIDENHFISGSIDGKVRIWEVLACQVVDYIDIREIVSAVCYRPDGKGGIVGSMTGNCRFYNIIDNRLELDAQICLNGKKKSPGKRIIGFEFSPSDPSKLMVCSVDSPVHIISGSDVICKFKGLRNGGNKMSASFTSDGKHIVSASEENVYVWNYNCKDKASRKKKIWSSESFFSRSASIAIPWSGVKITPEPPLSPTRVCDTAGSIPEMEPKYPDDDGDREHKVPSSSPDCFSLSRTLFPELLKGTATWPEEKLHDSSSMIPSPSMCKTEFKFLKNACQSMLSSPHMWGLVIVTAGWDGRIRTFLNYGCRDIEINLEGDVGIIQRHLSGGAFALPVPKYG 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42705597 42711093 - CrPI670011_09g023450.1 Cre09g2345 509013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2345 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 435 467 IPR001680 GO:0005515(InterPro)
Cre09g2345 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 365 IPR001680 GO:0005515(InterPro)
Cre09g2345 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 475 509 IPR001680 GO:0005515(InterPro)
Cre09g2345 828 PRINTS G protein beta WD-40 repeat signature 351 365 IPR020472 -
Cre09g2345 828 PRINTS G protein beta WD-40 repeat signature 495 509 IPR020472 -
Cre09g2345 828 PRINTS G protein beta WD-40 repeat signature 453 467 IPR020472 -
Cre09g2345 828 MobiDBLite consensus disorder prediction 698 714 - -
Cre09g2345 828 Pfam WD domain, G-beta repeat 330 363 IPR001680 GO:0005515(InterPro)
Cre09g2345 828 Pfam WD domain, G-beta repeat 471 507 IPR001680 GO:0005515(InterPro)
Cre09g2345 828 Pfam WD domain, G-beta repeat 430 465 IPR001680 GO:0005515(InterPro)
Cre09g2345 828 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 332 365 - -
Cre09g2345 828 PANTHER WD REPEAT DOMAIN 44 71 797 IPR040324 -
Cre09g2345 828 SUPERFAMILY WD40 repeat-like 329 791 IPR036322 GO:0005515(InterPro)
Cre09g2345 828 Gene3D - 319 659 IPR015943 GO:0005515(InterPro)
Cre09g2345 828 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 475 509 - -
Cre09g2345 828 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 435 467 - -
Cre09g2345 828 SMART WD40_4 560 600 IPR001680 GO:0005515(InterPro)
Cre09g2345 828 SMART WD40_4 325 364 IPR001680 GO:0005515(InterPro)
Cre09g2345 828 SMART WD40_4 601 641 IPR001680 GO:0005515(InterPro)
Cre09g2345 828 SMART WD40_4 469 508 IPR001680 GO:0005515(InterPro)
Cre09g2345 828 SMART WD40_4 428 466 IPR001680 GO:0005515(InterPro)
Cre09g2345 828 SMART WD40_4 510 549 IPR001680 GO:0005515(InterPro)
Cre09g2345 828 MobiDBLite consensus disorder prediction 693 717 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2345 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2345 Cre-Chr9:42705597 Cre09g2477 Cre-Chr9:44065964 7.30E-147 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g208 . . . . . . . . . . Cma02g00931 Cma15g01305 Car02g00680 Car15g01175 . . Cpe05g00780 . . . . . . . . . . . . . . . . . . . Csa05g00028 Chy09g01316 . . . Bda07g01942 . . . . . . Cmo02g00940 Cmo15g01372 . . . . . . Bhi12g00103 . . . . . Lcy12g1541 Cla01g00160 Cam01g0166 Cec01g0164 Cco01g0167 Clacu01g0162 Cmu01g0161 Cre09g2345 Lsi09g00152 . . Cme09g01865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009425 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 4 3 2 34