Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2346 ATGGATACTGCTCAATGGCCACAGGAGATTGTGGTGAAGCCAATTGAAGAAATTGTGACAAACACATGCCCAAAACCAAGTGTTTCAATTTTAGAGAGGAAGATTAGACCTCAAAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAACCAATACCAAGTTTTGTTATTACAATAATTATAGCCTTACACAACCAAGATACTTTTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGCTCCTTAAGAAACATTCCTGTTGGTGGAGGCTCAAGGAAGAACAAAAGACCTTCTTCATCATCATCTACATCTCCCACACCTTCTTCATCTCAACCTAGTCCCAAGAAAATTCTTGATCTCCCTCAAAACCCTAAAGCCACCCAAGATCTCAACTTGTTCTTCCCACCCTCAAACCATCAAGATCATCATCATTTCATCACCAATAGCCTCCCCGAAATCGTTGCCCCTGCAATTGCCAGTTCCTCATCGGCCTCTACTGTTGTGACGGCGGCGGTGTCGTCGTCGCCTTCGGCCCCATCGCATCATCATCCGCTTTCGGCAATGGAGCTTCTGGCCGGGATGGCGAACAACAACAACAACAACTCTAGGGGTTTGAATTGTTTCTTTCCAATGTCGTCTGTTGTTGTCCCTGATCCAGCTGGCTCCCTTTACACGGTAGGGTTTCCCGATCTCCATGATCAGTTCAAGTCAAACCTCGGATTATTCTCTCTTGATGGCTACAGCGTTGTCCCGACCGAGGGAAGCAAGGGTGGGGGGAGGCTTATGCAGCTGCCATTTGAGGATTTGAAGCAAGGGTCTAATGGAGGAGTTGAACAAGGCAAAGAGCAAGGAGAGCATAATTCAAGTGGGTATTGGAATGGAATGTTGGGTGGAGGATCATGGTAA 909 45.98 MDTAQWPQEIVVKPIEEIVTNTCPKPSVSILERKIRPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSSSSTSPTPSSSQPSPKKILDLPQNPKATQDLNLFFPPSNHQDHHHFITNSLPEIVAPAIASSSSASTVVTAAVSSSPSAPSHHHPLSAMELLAGMANNNNNNSRGLNCFFPMSSVVVPDPAGSLYTVGFPDLHDQFKSNLGLFSLDGYSVVPTEGSKGGGRLMQLPFEDLKQGSNGGVEQGKEQGEHNSSGYWNGMLGGGSW 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42743826 42745318 + CrPI670011_09g023460.1 Cre09g2346 509014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2346 302 MobiDBLite consensus disorder prediction 94 118 - -
Cre09g2346 302 MobiDBLite consensus disorder prediction 84 123 - -
Cre09g2346 302 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre09g2346 302 MobiDBLite consensus disorder prediction 271 302 - -
Cre09g2346 302 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 176 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2346 302 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre09g2346 302 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre09g2346 302 MobiDBLite consensus disorder prediction 277 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2389 Cre-Chr2:37327454 Cre09g2346 Cre-Chr9:42743826 6.60E-33 dispersed
Cre05g0140 Cre-Chr5:1519362 Cre09g2346 Cre-Chr9:42743826 3.60E-29 dispersed
Cre05g1095 Cre-Chr5:10267756 Cre09g2346 Cre-Chr9:42743826 2.10E-32 dispersed
Cre06g1027 Cre-Chr6:3949233 Cre09g2346 Cre-Chr9:42743826 2.70E-29 dispersed
Cre09g2346 Cre-Chr9:42743826 Cre10g1943 Cre-Chr10:34139173 1.50E-28 dispersed
Cre09g2346 Cre-Chr9:42743826 Cre09g2479 Cre-Chr9:44105917 1.00E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54447 PF02701 zf-Dof 4.40E-33 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2346 - - - 0.0