Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2350 ATGAGTTGCGGTTCGGATTTGATGATGTCTGGGAATCCAGAGGCTGATGATCGTGAGATTGTTGAGAAGGATCCATCTGGACGATATATACGGTATGATGAGATTTTGGGTAAAGGGGCATTCAAGACAGTATACAAAGCATTCGACGAAGTTGGTGGAATCGAAGTTGCTTGGAGTCAAGTGGACATTGAAGATGTTTTGCAGTCACCAGAACAACTTCAAAGATTGTATTCTGAAGTCCATCTGTTGAAGTCACTGAAACATGAAAATATCATCAAGTTCTATAGCTATTGGGTTGATGATAAGCATAAGACTATCAACATGATTACAGAATTGTTCACTTCTGGGAGTTTGAGGCAATATCGAAAGAAGCATAGGAAAGTTGACTTGAAGGCCTTCAAGAACTGGGCAAGGCAGATACTGCGAGGTTTAACATATTTACATGGTCATGACCCTCCAATCATTCACAGGGATTTGAAATGTGATAATATATTCGTCAATGGGAATACTGGAGAAGTTAAAATTGGAGATCTCGGATTGGCGATTGTCATGCAGCAGCCTACTGCTCGAAGTGTAATTGGCACTCCAGAGTTCATGGCTCCAGAACTTTATGATGAAGACTATAATGAACTTGTTGACATATATTCTTTTGGCATGTGCATGTTGGAAATTGTTACTTGTGAATACCCATATAATGAGTGCAAAAATTCTGCCCAAATATTCAAGAAGGTTACTTCGGGTATAAAGCCTGCTTCCCTTGAGAAAGTGCTGGACCCTCAAGTTAAGCAATTCATAGAGAAGTGTCTGGTTCCAGCATCCATGAGATTACCTGCAAGTGAACTCTTGAAAGATCCTTTCCTTGCAACTGAAAGTCCCAAGGAGCATAGTTCTGAACTTTCAAGGTTATTGAATGAGCAGTTCAAATCTGTAGATCCTCCACTGCTTGGTTCTCATCCAATGGACACAGACCCTAACTCCAGCAAACTCTCAGGCTCAGTGGCCTCATCTGTCAAAAGCAATAATGGAATTTCTCACTTTACAACTCTAGAACTGAAGAGGCTCACTGAGAACAATGAATTGACACTGAAAGGGGACATGACTGATCATAATACAATGTCATTCTATTTGCGTATTGCTGAATTATATGGTAAATCTAGGAATATCCATTTTGCCTTCTATCTCGACTCTGATACTTCTATGGCAATTGCTTTGGAGATGGTTGAACAACTTCAACTGTCAAATGAAGATGCGACAATCATAGCAAAACTAATCGATGAATTAATTGCCAAGTTTGTTCCTAGCTGGAAACCATGTCCAAACTATTGTGAAGAACAAAATACCCCACATAGTTCTTCTGAAACTCAAGAGGATAAGACCTTCATTTCTCCTTTTTTCTCTGAGCTAGTACTGTCATCTCCCATGGTGGCTGCTGCTGCAAGGAATAGTCCAACGGATTTGACCAAGGTTGAAGATCAAGAAAACAAGCAGTCGATTATTTCGTGTGCTTCTGTGGAATACATTTACTCAACTGTCTCAGATTACAGCATAGGAAAAGGATCAGAATGTGGTGAGTTTGGCCACCCTGAATGTGACAAAGCTTATATTAGCAGTGGAACAATTGATTTAGATGCAGAAGCTGTTGGATCTATTCCGACGATGATCGATTTTGCAAAACCATCTCTAATCTCCTCCTGCTCTGGAATGTCCAAAGAATTGAGTTTATCTAGCTTTTCCACTCTTTCTCTGGAAGAAAGAGATCACCAAGATGAACTCAAGATGGAGATTGATGCTATTGACTTGCAATACCACCAATGCCTTTGTGAACTGTCAAGAATGAGAGAGGAAGCAATAGAAAGTGCCAAGAAGAGGTGGATGTCAAAGAAGAAAGCTACTGCTATTTGA 1902 40.17 MSCGSDLMMSGNPEADDREIVEKDPSGRYIRYDEILGKGAFKTVYKAFDEVGGIEVAWSQVDIEDVLQSPEQLQRLYSEVHLLKSLKHENIIKFYSYWVDDKHKTINMITELFTSGSLRQYRKKHRKVDLKAFKNWARQILRGLTYLHGHDPPIIHRDLKCDNIFVNGNTGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYDEDYNELVDIYSFGMCMLEIVTCEYPYNECKNSAQIFKKVTSGIKPASLEKVLDPQVKQFIEKCLVPASMRLPASELLKDPFLATESPKEHSSELSRLLNEQFKSVDPPLLGSHPMDTDPNSSKLSGSVASSVKSNNGISHFTTLELKRLTENNELTLKGDMTDHNTMSFYLRIAELYGKSRNIHFAFYLDSDTSMAIALEMVEQLQLSNEDATIIAKLIDELIAKFVPSWKPCPNYCEEQNTPHSSSETQEDKTFISPFFSELVLSSPMVAAAARNSPTDLTKVEDQENKQSIISCASVEYIYSTVSDYSIGKGSECGEFGHPECDKAYISSGTIDLDAEAVGSIPTMIDFAKPSLISSCSGMSKELSLSSFSTLSLEERDHQDELKMEIDAIDLQYHQCLCELSRMREEAIESAKKRWMSKKKATAI 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42767772 42770571 + CrPI670011_09g023500.1 Cre09g2350 509018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2350 633 Pfam Protein kinase domain 33 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2350 633 SUPERFAMILY Protein kinase-like (PK-like) 32 288 IPR011009 -
Cre09g2350 633 SMART serkin_6 30 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2350 633 Gene3D Phosphorylase Kinase; domain 1 14 111 - -
Cre09g2350 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g2350 633 FunFam probable serine/threonine-protein kinase WNK9 113 292 - -
Cre09g2350 633 FunFam Probable serine/threonine-protein kinase WNK1 15 111 - -
Cre09g2350 633 ProSiteProfiles Protein kinase domain profile. 30 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2350 633 MobiDBLite consensus disorder prediction 313 336 - -
Cre09g2350 633 Gene3D Transferase(Phosphotransferase) domain 1 113 294 - -
Cre09g2350 633 CDD STKc_WNK 28 287 - -
Cre09g2350 633 MobiDBLite consensus disorder prediction 320 336 - -
Cre09g2350 633 Gene3D - 370 471 - -
Cre09g2350 633 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 375 429 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Cre09g2350 633 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 16 616 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0133 Cre-Chr5:1469645 Cre09g2350 Cre-Chr9:42767772 4.60E-175 dispersed
Cre06g1728 Cre-Chr6:15233650 Cre09g2350 Cre-Chr9:42767772 1.20E-122 dispersed
Cre09g2350 Cre-Chr9:42767772 Cre10g0688 Cre-Chr10:6547289 1.10E-97 dispersed
Cre09g2350 Cre-Chr9:42767772 Cre02g1958 Cre-Chr2:32971515 1.70E-127 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64437 PF00069 Pkinase 9.40E-51 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2350 K08867 - csv:101207748 1152.12