Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2381 ATGATGGACCCGCCGGAGCCGGAGGAGGAAGCTGCCGGTGGTTCTAATAGCGGCGGCGGCGGCGGAAGAGGAGGAGGAGAAGTTGAAAGGGAACACATGTTTGACAAAGTGGTGACTCCAAGTGATGTAGGGAAATTAAATCGGCTTGTTATTCCAAAGCAACACGCTGAGAGATTTTTCCCTTTAGATTCATCAACAAACGACAAGGGTTTACTGTTAAACTTCGAAGATCGAAACGGCAAATCATGGCGGTTCCGTTACTCTTACTGGAACAGCAGCCAAAGCTACGTTATGACCAAAGGCTGGAGTCGCTTCGTCAAGGAGAAACGCCTCGACGCCGGCGATATCGTCTCATTTCAACGTGGGGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGGCGTCGCCGCCCTGAACTCCCCATCCACCATCATCACCACCACCACTATCCCACCACCACCACTCTCCGACCGAGCATCGTCGTCCCGAGCGGTGGTGCTACCACTTGGGGGCCATTAGTCTGGCAGCCACTCGGCGCAGCAACAGCCGGATACCACCATCAGCCAGCTGCCGTAACACCGCGGGACCACACACACTTGTCGCAAATAAACAACAACAATAACAACAACAATGTGAATGGGATGTGTTGTCCGTACGGATATGGGAGTGTTGAAACAACAACTTCTGGGTTGGTGTATTTGAGGACAGAATTAGGAGGAAGATCAAGAAGGGCAACTCCAAGATTAGGGGAAGAGGAATTTGAGTTGGAAATGGAAGGGAATAATAATTATCAGATGCAGCAGGAGTATTGTAGTAATGGTGGGGGTGCTTCAATGGTGATTCTACAAGGAAATTGTATGGAAGATCATAAATTAAAAACAACAAATAATAATAATAACAATAATAGTGAAGAAGATATACCAGTGAAGAAATCAAGATTGAGGCTATTTGGTGTAAACATGGAGATGGAGAGTCCAATTTCATCACCTTCTTCTGATGATTGTGATTTATTATTATCTACAAACCCCAAAACCACTACTACTACCACTCAATTCCAATTGCCTTCTTCAATTTACAAGTAA 1086 45.95 MMDPPEPEEEAAGGSNSGGGGGRGGGEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGEIGRDRLYIDWRRRPELPIHHHHHHHYPTTTTLRPSIVVPSGGATTWGPLVWQPLGAATAGYHHQPAAVTPRDHTHLSQINNNNNNNNVNGMCCPYGYGSVETTTSGLVYLRTELGGRSRRATPRLGEEEFELEMEGNNNYQMQQEYCSNGGGASMVILQGNCMEDHKLKTTNNNNNNNSEEDIPVKKSRLRLFGVNMEMESPISSPSSDDCDLLLSTNPKTTTTTTQFQLPSSIYK 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43162532 43163617 - CrPI670011_09g023810.1 Cre09g2381 509049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2381 361 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 22 322 IPR044800 GO:0003700(InterPro)
Cre09g2381 361 SMART B3_2 34 139 IPR003340 GO:0003677(InterPro)
Cre09g2381 361 ProSiteProfiles B3 DNA-binding domain profile. 34 139 IPR003340 GO:0003677(InterPro)
Cre09g2381 361 FunFam B3 domain-containing protein 27 148 - -
Cre09g2381 361 SUPERFAMILY DNA-binding pseudobarrel domain 31 140 IPR015300 -
Cre09g2381 361 Pfam B3 DNA binding domain 34 138 IPR003340 GO:0003677(InterPro)
Cre09g2381 361 CDD B3_DNA 32 121 IPR003340 GO:0003677(InterPro)
Cre09g2381 361 Gene3D - 28 150 IPR015300 -
Cre09g2381 361 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2381 Cre-Chr9:43162532 Cre10g1985 Cre-Chr10:34551782 1.10E-38 dispersed
Cre06g1000 Cre-Chr6:3567285 Cre09g2381 Cre-Chr9:43162532 9.90E-53 transposed
Cre07g1170 Cre-Chr7:24085315 Cre09g2381 Cre-Chr9:43162532 3.50E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54449 PF02362 B3 7.10E-29 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2381 K09287 - csv:101211271 503.442