Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2389 ATGGAAGAAGCTGCAGGTGGATCCGGATCAGGATTACCTGATCCATCTCAATTATTCGGAGTTTCCACACCGCCGCCGCCTTTAACCGTCGATGCCGCCATGAGTGATTCTCAGCAAGTCGAAGCTGCTTCTCCGATTAGTAGCCGACCTCCAGCAGTACCGTCTTCGTTAAATTATGAGGAACTCATTCGTCTCGGCGGCGGTGGCGGTGGTCAGATGGTGGTTGACGACGAAGAAACTGACCGTAGCGGCGGCGGAAGCGGTGGTAATCGGTGGCCGCGTCAGGAAACGCTTGCTTTGCTTAAAATTAGGTCAGAGATGGATTCCGCGTTTCGTGATGCTACACTTAAAGGACCTCTCTGGGATGAAGTCTCCAGGAAGTTAGGGGAAATGGGGTATAAGAGAAATGCAAAAAAATGCAAAGAGAAATTCGAGAATGTTCAAAAATATTACAAACGCACAAAAGAAGGAAGAGGAGGGCGTCAAGATGGCAAAACCTACAAATTCTTTACGCAACTTGAGGCTCTTCATAACGCAAACGTGGCGCCTTCTTCTTCTTCTTCATTCACACTGCCACAGCCCACCACCGTTGGCTTTGGGATTAGCAACCCTACTCCAATCTCATCCGTTAAAATTTCCACATCTTCTTCACAAAACCCAATGGGAATCTTTTCTCCTCCACCAGATCATTTCACTGTCCGGCCACCACCCACCGTCGCCGCTCCTATGGGTGTAAGCTTTTCGTCGAACACCTCATCTGCATCCACTGAAGACGATGATAACGATGAAGATGAAGACATGGGGTTTGATGTTGACCTTGAAGGGTTGCCGGAGAATGTAGCGGGTAGTAGTCGGAAGCGGCGGAGAGGGGTGGTTAAAGGAAATGAGTCAAGAACTCATAAGATGATGATGGAATTTTTCGAGGGTTTGATGAAACAGGTGATGGAGAAACAAGAAGTTATGCAACAGAAGTTTTTGGAAGCGATTGAAAAAAGAGAACAAGATAGGATGGTCAGAGAAGAGAATTGGAAAAGGCAAGAAATGGCTAGGTTGAGTCAAGAACAAGAAAGAATGGCTCAAGAACGGACAATTTCTGCTTCTAGAGATGCTGCCATTATTGCTTTTCTTCAGAAATTTACTGGCCAAACCATTCAATTTTCAGCCCCACAACAACAACAACAATTTGATGTGGCGCCTGTGCCTGTGGCTGTACCTGTATCCGTGGCTGTGTCTGTACCTATGCCTATGCCTGTGCCAGCGCCACTATCTCCTGTCCCCTCTCAGCCATTGCAACCACAAACTCTGCCACAGACGCCTTCAAATACAATCCCATTGGATCAACCAGTGTTTCAGGAAATTAGCCAAGGAGGAGGAGATGGATCTTCAGAACCCATTTCTTCAAGATGGCCAAAACAGGAAGTTCTAGCTTTAATAAAACTGAGAGGTGGGCTTGACGCCAGGTATCAAGAAACAGGTCCAAAGGGTCCTCTGTGGGAAGAGATTTCAGCTGGAATGGCACGGATGGGTTACAAGAGAAGTGCTAAAAGATGTAAAGAGAAATGGGAGAATATCAATAAGTATTTCAAGAAAGTTAAAGAAAGCAACAAAAAACGTCGTGAGGATTCCAAAACCTGCCCTTATTTCAATGAACTCGATGCTCTTTACCGCAAGAAAATCCTTTCTGCTTCTGCTTCTGATTCTGGTTCCTTTAGTGATACCAACAAATTTGAACAAAACCCAACAACAACAACAACAACAGATCTTCAACCTCAACCCCATTCTTCCATTCCTCAAGGTTTATCCGCTACTCTTTTTGGTGAAGGAACAGAAGAACAACCATCATCCACGAAGCCAGAAGACATTGTGAATGAGTTGATGGAGCTGCAGGACGACATCTACCGGCGTCATCTCGATCAAGATGATGACGACGAAAACGACGATTATTGCAGTGATGATGATGATGATTTACCACAAGAAAAGAGAAACAGTAACATTGATTATAAAATAGAGTTTCAAAGAAGAAACAATGTAGGAAACTCCAATGGCGTTGCGAGTGAGTTTCAATCAATGGCGGTGGTTCAATAG 2085 45.13 MEEAAGGSGSGLPDPSQLFGVSTPPPPLTVDAAMSDSQQVEAASPISSRPPAVPSSLNYEELIRLGGGGGGQMVVDDEETDRSGGGSGGNRWPRQETLALLKIRSEMDSAFRDATLKGPLWDEVSRKLGEMGYKRNAKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFTQLEALHNANVAPSSSSSFTLPQPTTVGFGISNPTPISSVKISTSSSQNPMGIFSPPPDHFTVRPPPTVAAPMGVSFSSNTSSASTEDDDNDEDEDMGFDVDLEGLPENVAGSSRKRRRGVVKGNESRTHKMMMEFFEGLMKQVMEKQEVMQQKFLEAIEKREQDRMVREENWKRQEMARLSQEQERMAQERTISASRDAAIIAFLQKFTGQTIQFSAPQQQQQFDVAPVPVAVPVSVAVSVPMPMPVPAPLSPVPSQPLQPQTLPQTPSNTIPLDQPVFQEISQGGGDGSSEPISSRWPKQEVLALIKLRGGLDARYQETGPKGPLWEEISAGMARMGYKRSAKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFNELDALYRKKILSASASDSGSFSDTNKFEQNPTTTTTTDLQPQPHSSIPQGLSATLFGEGTEEQPSSTKPEDIVNELMELQDDIYRRHLDQDDDDENDDYCSDDDDDLPQEKRNSNIDYKIEFQRRNNVGNSNGVASEFQSMAVVQ 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43285516 43287841 - CrPI670011_09g023890.1 Cre09g2389 509057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2389 694 PANTHER FI21293P1 68 564 - -
Cre09g2389 694 MobiDBLite consensus disorder prediction 256 272 - -
Cre09g2389 694 MobiDBLite consensus disorder prediction 564 601 - -
Cre09g2389 694 FunFam Trihelix transcription factor GT-2 92 153 - -
Cre09g2389 694 MobiDBLite consensus disorder prediction 32 54 - -
Cre09g2389 694 Gene3D - 92 153 - -
Cre09g2389 694 Gene3D - 469 530 - -
Cre09g2389 694 SMART sant 88 150 IPR001005 -
Cre09g2389 694 SMART sant 465 527 IPR001005 -
Cre09g2389 694 MobiDBLite consensus disorder prediction 67 94 - -
Cre09g2389 694 MobiDBLite consensus disorder prediction 242 296 - -
Cre09g2389 694 CDD GT1 90 155 - -
Cre09g2389 694 MobiDBLite consensus disorder prediction 637 664 - -
Cre09g2389 694 Pfam Myb/SANT-like DNA-binding domain 467 554 IPR044822 -
Cre09g2389 694 Pfam Myb/SANT-like DNA-binding domain 90 176 IPR044822 -
Cre09g2389 694 ProSiteProfiles Myb-like domain profile. 461 525 IPR001005 -
Cre09g2389 694 MobiDBLite consensus disorder prediction 1 55 - -
Cre09g2389 694 CDD GT1 467 532 - -
Cre09g2389 694 ProSiteProfiles Myb-like domain profile. 90 148 IPR001005 -
Cre09g2389 694 FunFam Trihelix transcription factor GT-2 469 530 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0978 Cre-Chr1:15347219 Cre09g2389 Cre-Chr9:43285516 1.40E-38 dispersed
Cre06g1739 Cre-Chr6:15696391 Cre09g2389 Cre-Chr9:43285516 2.40E-41 dispersed
Cre08g0330 Cre-Chr8:10442483 Cre09g2389 Cre-Chr9:43285516 2.50E-94 dispersed
Cre08g0332 Cre-Chr8:10629697 Cre09g2389 Cre-Chr9:43285516 1.10E-74 dispersed
Cre09g2389 Cre-Chr9:43285516 Cre10g2041 Cre-Chr10:35130551 7.70E-41 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54451 PF13837 Myb_DNA-bind_4 5.50E-23 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2389 - - - 0.0