Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2390 ATGGGTTTGCTCAAATTCTTTAGAGTTAAGAGAAAATCCAAAGTTGCTGATAAAAAAACCGTTCTTGATGCTCAATTTGAAGAGGGTTTTTTCGCTACAAGGTTTCGCTGGACTGAGATCGAGGCTTTCACTAAGAATTTCTCCGCTCTTGTCGGCTCCGGCGGCTTCAGCAACGTTTATCTTGCTCGGACGGCGCCGGGGATGGCGGCCGCCGTCAAGATTTTGGGCGCTAGTGAGCGGCTCAACCGGATGTTCCGCCAGGAATTGGACATTCTTCTCCAGCTCCGTCACCGGAATATTGTCAATTTCGTTGGGTATTGCGATGAACGAGATGAAGGAGCCTTGGTATTCGAATATGTCCCAAATGGGAACTTACAAGAGAAGCTCCACAGCCGGGCGGCGGCCACGAGGACGGCGGTTCTTCCATGGAAACTCCGGCTACTCATAGCCTTTCAATTAGCTCAAGCAATCGAATACCTCCATGAGAAATGCAGCTTACAAATCGTTCACGGCGATATAAAATCATCGAACATTTTACTGGACGAACGATTCAATTGCAAATTATGCGATTTCGGGTCAGCAAAAATGGGATTTTCGTCGTCGGTGGGGAATCCATCCTCGTCGCCGTCGCCGTCGAGCCCCTTCAGAGCGAAGCAATTGATGATGGGATCTCCAGGATACACAGATCCCCAATATCTAAGAACCGGAATCGCTTCAAAGAAAAACGATATTTACAGTTTCGGCGTTGTTCTCTTAGAGCTGATCACCGGAAAAGAGGCTTTCTGTTCGGAGAAAGGTCAGATTCTGACATCAGTTTTACCTCCGGCGGTTCGCGACGGCGGAGGAATTAAACCGTCGGAAGTGGCGGAACTAGTCGATCCGCGACTCCGGGGCGATTACGACGGCAATGAAGCCGGTGCGTTGATTTCAATTGCGGCGGCGTGCGTGACGCAACCGCCGGCGCCGAGGCCGACGATCGGAGGCGTGATGCAGATGATGTCGGAGAAGATCGGAAATGTTGGCGACGGGGTATGGGCGGTGAAACGTGGCAGTAAATCATTGGATGTGGAGAGATGGTAA 1080 50.83 MGLLKFFRVKRKSKVADKKTVLDAQFEEGFFATRFRWTEIEAFTKNFSALVGSGGFSNVYLARTAPGMAAAVKILGASERLNRMFRQELDILLQLRHRNIVNFVGYCDERDEGALVFEYVPNGNLQEKLHSRAAATRTAVLPWKLRLLIAFQLAQAIEYLHEKCSLQIVHGDIKSSNILLDERFNCKLCDFGSAKMGFSSSVGNPSSSPSPSSPFRAKQLMMGSPGYTDPQYLRTGIASKKNDIYSFGVVLLELITGKEAFCSEKGQILTSVLPPAVRDGGGIKPSEVAELVDPRLRGDYDGNEAGALISIAAACVTQPPAPRPTIGGVMQMMSEKIGNVGDGVWAVKRGSKSLDVERW 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43311953 43313391 + CrPI670011_09g023900.1 Cre09g2390 509058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2390 359 Gene3D Transferase(Phosphotransferase) domain 1 120 341 - -
Cre09g2390 359 Pfam Protein kinase domain 49 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2390 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g2390 359 ProSiteProfiles Protein kinase domain profile. 45 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2390 359 PANTHER OS01G0253100 PROTEIN 19 335 - GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre09g2390 359 SMART serkin_6 45 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2390 359 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524(InterPro)
Cre09g2390 359 SUPERFAMILY Protein kinase-like (PK-like) 30 333 IPR011009 -
Cre09g2390 359 Gene3D Phosphorylase Kinase; domain 1 7 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2390 Cre-Chr9:43311953 Cre05g1186 Cre-Chr5:11460574 7.00E-46 dispersed
Cre09g2390 Cre-Chr9:43311953 Cre06g0921 Cre-Chr6:2631998 5.90E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64438 PF00069 Pkinase 1.30E-40 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2390 - - - 0.0