Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2391 ATGTCGCAATTCGATTGCATACACGTGGACGCCCCAAAACGGAGCCAAACTCTTGATGCCTCTCTCACTCGAAAGGTGGGAGCAGAATTTGTGGGCACATTCATTCTCATATTTGCTGCAACAGCCGCACCCATCGTCAACCAAAAGTACAACTCCGTCATGTCACTGATCGGAAACGCTGCATGCGGCGGCCTAGCGGCAATGGTCGTAATTCTGTCCACGGGACACATATCTGGCGGCCACCTAAACCCGTCACTAACCATCGCCTTGGCCGCCGTCCGCCACTTCCGTTGGGCCCATGTCCCCGCCTACATCATGGCCCAGGTCTCCGCTTCCATCTGCGCCTCCTTCGCTCTTAAAGGCGTTTTTCACCCTTTTATGTCTGGCGGCGTCACCGTCCCCTCCGTTGGCACTGCCCAGGCCTTTGCTCTCGAATTCCTCATCACTTTCAATCTCTTGTTCGTCGTCACCGCTCTCTCTACTGATACTCGAGCCGTTGGAGAGTTGGGCGGAATTGCAGTTGGAGCAACGGTGGTGCTCAACATTCTTATCGCTGGGCCATCCACCGGTGGTTCGATGAACCCAGTGAGGACTCTAGGCCCCGCCGTGGCTGCCGGAAATTATAAAGAACTGTGGGTGTACATGGTGGCTCCTACACTTGGGGCGATCGTTGGCGCTGGAACCTACACCGCCGTGAAGCACAAAGATGATGAAATGGATGTTCCGCCGCATGTGAGGAGCTTCCGTCGATGA 753 55.51 MSQFDCIHVDAPKRSQTLDASLTRKVGAEFVGTFILIFAATAAPIVNQKYNSVMSLIGNAACGGLAAMVVILSTGHISGGHLNPSLTIALAAVRHFRWAHVPAYIMAQVSASICASFALKGVFHPFMSGGVTVPSVGTAQAFALEFLITFNLLFVVTALSTDTRAVGELGGIAVGATVVLNILIAGPSTGGSMNPVRTLGPAVAAGNYKELWVYMVAPTLGAIVGAGTYTAVKHKDDEMDVPPHVRSFRR 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43314759 43318311 - CrPI670011_09g023910.1 Cre09g2391 509059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2391 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Cre09g2391 250 PANTHER AQUAPORIN NIP2-1 17 236 IPR034294 -
Cre09g2391 250 Gene3D Glycerol uptake facilitator protein. 5 241 IPR023271 -
Cre09g2391 250 FunFam Aquaporin NIP2-1 14 243 - -
Cre09g2391 250 Pfam Major intrinsic protein 21 229 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2391 250 SUPERFAMILY Aquaporin-like 20 238 IPR023271 -
Cre09g2391 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2391 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2391 250 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2391 250 PRINTS Major intrinsic protein family signature 212 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2391 250 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2391 250 PRINTS Major intrinsic protein family signature 24 43 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2391 Cre-Chr9:43314759 Cre10g1641 Cre-Chr10:30625862 2.00E-52 dispersed
Cre09g2391 Cre-Chr9:43314759 Cre09g2392 Cre-Chr9:43321484 5.30E-109 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2391 K09874 - csv:101212485 430.254