Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2392 ATGCCGGAATCGGATAGTGGAACGCCGGTAGCATCGGCGCCGGCGACGCCGGGGACGCCGGGGGGGCCGCTGTTTTCCGGCCTCCGAGTGGATTCTCTATCGTACGATCGGAAGTCAATGCCGCGGTGTAAGTGCTTGCCCGTGAATGCTCCCACGTGGGGCCAACCTCACACGTGCTTCACTGACTTCCCTGCTCCTGATGTCTCTCTCACCCGCAAGCTGGGAGCAGAATTTGTGGGAACATTCATCTTGATATTTGCTGCGACGGCAGGGCCCATTGTCAACCAAAAGTACAACGGCGTCGAGACTCTGATCGGCAACGCCGCGTGCGCCGGCCTGGCGGTGATGATCGTAATTCTGTCAACGGGACACATTTCCGGCGCCCATCTGAACCCGTCGCTCACCATTGCTTTTGCCGCCCTCCGCCACTTCCCTTGGGTTCAAGTTCCGGCCTACATCGCCGCCCAGGTCTCTGCCTCCATTTGCGCCTCCTTCGCTCTCAAAGGTGTTTTCCACCCCTTCATGTCCGGTGGCGTCACCGTCCCCTCTGTCAGCACTGGCCAAGCCTTCGCTCTTGAATTTATGATCACTTTCAATCTCTTGTTTGTCGTCACTGCGGTCGCCACTGATACTCGCGCGGTTGGAGAGTTGGCTGGAATTGCAGTCGGAGCTACAGTGATGCTTAACATTCTTGTCGCTGGGCCCTCAAGCGGTGGTTCGATGAACCCAGTTCGAACTTTGGGCCCCGCCGTGGCTGCCGGAAATTACAGAGCATTATGGGTGTATCTGGTGGCGCCGACGCTAGGGGCAATACTCGGTGCCGGAACTTACACTGCCGTTAAGCTGAGAGACGACGAAGTGGATGCTCCGTCGCAGGTAAGGAGCTTCCGGCGTTGA 897 58.31 MPESDSGTPVASAPATPGTPGGPLFSGLRVDSLSYDRKSMPRCKCLPVNAPTWGQPHTCFTDFPAPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYNGVETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWVQVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFMITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSSGGSMNPVRTLGPAVAAGNYRALWVYLVAPTLGAILGAGTYTAVKLRDDEVDAPSQVRSFRR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43321484 43326515 - CrPI670011_09g023920.1 Cre09g2392 509060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2392 298 Gene3D Glycerol uptake facilitator protein. 64 292 IPR023271 -
Cre09g2392 298 FunFam Aquaporin NIP2-1 60 292 - -
Cre09g2392 298 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Cre09g2392 298 Pfam Major intrinsic protein 68 277 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2392 298 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2392 298 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2392 298 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2392 298 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2392 298 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2392 298 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2392 298 PANTHER AQUAPORIN NIP2-1 68 284 IPR034294 -
Cre09g2392 298 MobiDBLite consensus disorder prediction 1 25 - -
Cre09g2392 298 SUPERFAMILY Aquaporin-like 69 286 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1571 Cre-Chr7:31176703 Cre09g2392 Cre-Chr9:43321484 5.10E-90 dispersed
Cre09g2392 Cre-Chr9:43321484 Cre10g1641 Cre-Chr10:30625862 1.40E-55 dispersed
Cre09g2391 Cre-Chr9:43314759 Cre09g2392 Cre-Chr9:43321484 5.30E-109 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2392 K09874 - csv:101212651 563.533