Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2442 ATGAGCTTCAAAAGGGACCTCAAGCTTGTCGTCTTCGTTTTCTTGGCAGTCTTCTGGTTTGCAGCGACTTTTTATCCGGTCATGTCAGAGCCAATCCAAGACAAGGAAGCTTTGCTTAATTTTATCAACAAGATGGATCACTCACACTCACTCAATTGGAAGAAGAGCACTTCTTTATGCAAAGAGTGGATGGGAGTTCAATGCAACAATGCTGGATCCCAAGTTGTAGCTCTGCGATTGGCTGAAGTTGGCTTACACGGTTCGATCCCAATCAACACTCTTGGTCGACTATCAGGACTTGAAACTCTAAGCCTAGGATCGAATTACATATCAGGGCCTTTCCCTTCCGACTTCCAAAAACTGAGAAATCTCAACTCACTCTACTTGGAAAACAACAAGTTTTCTGGTCCATTGCCATTGGATTTCTCAGTATGGAAGAATCTCAACATCATTGATTTGTCCAACAATGCCTTCAATGGGAGCATCCCTAGCTCGATTTCAAACACGACACATTTAACGACATTAAACCTTGCCAATAACTCACTCTCTGGTAAGATTCCAGACCTCCAACTTCCTAATTTGCAGGAGTTGGATCTTTCAAACAACCATCTCACAGGGAATGTCCCTCAGTCCCTTCAAAGATTTCCGAGTCGGGCATTCTCCGGCAACAACCTCATCCCTGGAAATGCCATTCCTCCAGTTCGTCCTGGACAATCGCCCAATGCTCAACCATCAAAGAAAAGTACAACAACAATTGGTGAAGCAGCAATTTTAGGCATTATAATTGGAGGTTCTGCAGTGGGGCTAGTTATAGCAGTCATTTTGATGGTTATGTGCTCCTCAAACAGAGGAGTAAAAAACAAGGCATCATCAAAACTGGACAAACAAGATCTGTTTGTAAAGAAAAGGGGATCTGATACACAAAGCAACAACCTCAAGTTCTTTCAGAGTCAGAGCCTTGAGTTTGACTTGGAGGACTTGTTGAGGGCATCTTCCGAGGTGCTTGGGAAGGGGACGTCCGGGACGACATATAAGGCGACATTAGAAGACGGTAATGCCGTGGCAGTGAAGAGGTTGAAGGAAGTGAGTGTTTCAAAGAAAGAATTTGAGCAGCAAATGGATGTGCTTGGGAGCATTGAACATGAAAATGTGTGTGGTTTAAGGGCTTATTATTATTCAAAAGATGAGAAACTCATGGTCTTTGACTTTTACCAACATGGAAGTGTCTCAGCAATGTTGCATGTTGCGAGAGAGAAAGGGCAATCTCCTCTAGACTGGGAAACTCGACTCCGAATCGCCATTGGCGCCGCCAGAGGAATCGCTCGCATTCACTCAGAAAACTGCGGCAAACTCCTTGTCCATGGAAACATCAAGGCCTCAAACGTCTTCCTCAACTCCGACGGCTACGGTTGCGTCGCAGACGCCGGCGTCGCTGCTCTGATGAACCTCATGGTCCCGCCAGCCACCAGATCCGCTGGATACCGTGCTCCCGAACTCAAGGACTCTCGCAAAGCATCTCAAGCCTCTGATACTTACAGCTTCGGCGTCGTGGTTCTCGAGCTCCTCACCGGAAAATTTCCACTGCATACGAAGGGAGGCAACAGCGGAGGCGGCGGCGATCAGATTATCCACCTAGTGCGTTGGGTGAACGCGGTGGTCCGCGAGGAATGGACGGCAGAGGTGTTTGATGTGGAGCTTTTGAGGTATCCGAACATAGAGGAGGAGATGTTAGAGACGCTGCAGATTGCGCTATCTTGTGTAGGAAGAGTTCCGGATGATCGGCCGGCAATGGCGGATGTTGCGGCTCGTTTGGAGGGAGTTCGTCGGGTGAGCGGCGTAGGAAGCCTACCACCGCCGCCGCCGCCGCCGCCGCCGTTGGAACGTGGAGCGGGGGATTTGGTTCAGATTCAGGTGAATGTGGCTGAGGGTGACGGTGACGGTGACGGTGGAGCTCCGTCGAGATCGAATTGA 1971 48.81 MSFKRDLKLVVFVFLAVFWFAATFYPVMSEPIQDKEALLNFINKMDHSHSLNWKKSTSLCKEWMGVQCNNAGSQVVALRLAEVGLHGSIPINTLGRLSGLETLSLGSNYISGPFPSDFQKLRNLNSLYLENNKFSGPLPLDFSVWKNLNIIDLSNNAFNGSIPSSISNTTHLTTLNLANNSLSGKIPDLQLPNLQELDLSNNHLTGNVPQSLQRFPSRAFSGNNLIPGNAIPPVRPGQSPNAQPSKKSTTTIGEAAILGIIIGGSAVGLVIAVILMVMCSSNRGVKNKASSKLDKQDLFVKKRGSDTQSNNLKFFQSQSLEFDLEDLLRASSEVLGKGTSGTTYKATLEDGNAVAVKRLKEVSVSKKEFEQQMDVLGSIEHENVCGLRAYYYSKDEKLMVFDFYQHGSVSAMLHVAREKGQSPLDWETRLRIAIGAARGIARIHSENCGKLLVHGNIKASNVFLNSDGYGCVADAGVAALMNLMVPPATRSAGYRAPELKDSRKASQASDTYSFGVVVLELLTGKFPLHTKGGNSGGGGDQIIHLVRWVNAVVREEWTAEVFDVELLRYPNIEEEMLETLQIALSCVGRVPDDRPAMADVAARLEGVRRVSGVGSLPPPPPPPPPLERGAGDLVQIQVNVAEGDGDGDGGAPSRSN 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43779032 43781444 + CrPI670011_09g024420.1 Cre09g2442 509110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2442 656 ProSiteProfiles Protein kinase domain profile. 329 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2442 656 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Cre09g2442 656 SUPERFAMILY Protein kinase-like (PK-like) 333 625 IPR011009 -
Cre09g2442 656 Pfam Protein kinase domain 332 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2442 656 Gene3D Ribonuclease Inhibitor 32 189 IPR032675 -
Cre09g2442 656 FunFam Probable inactive receptor kinase RLK902 31 190 - -
Cre09g2442 656 MobiDBLite consensus disorder prediction 610 631 - -
Cre09g2442 656 MobiDBLite consensus disorder prediction 614 628 - -
Cre09g2442 656 PANTHER OS05G0588300 PROTEIN 11 610 IPR050994 -
Cre09g2442 656 Gene3D Phosphorylase Kinase; domain 1 295 403 - -
Cre09g2442 656 ProSiteProfiles Leucine-rich repeat profile. 171 193 IPR001611 GO:0005515(InterPro)
Cre09g2442 656 MobiDBLite consensus disorder prediction 226 248 - -
Cre09g2442 656 PRINTS Leucine-rich repeat signature 191 204 - -
Cre09g2442 656 PRINTS Leucine-rich repeat signature 172 185 - -
Cre09g2442 656 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Cre09g2442 656 Gene3D Transferase(Phosphotransferase) domain 1 405 612 - -
Cre09g2442 656 FunFam pollen receptor-like kinase 1 299 403 - -
Cre09g2442 656 Gene3D Ribonuclease Inhibitor 190 232 IPR032675 -
Cre09g2442 656 Pfam Leucine Rich repeats (2 copies) 170 205 IPR025875 -
Cre09g2442 656 Pfam Leucine rich repeat 88 134 IPR001611 GO:0005515(InterPro)
Cre09g2442 656 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524(InterPro)
Cre09g2442 656 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 404 614 - -
Cre09g2442 656 SUPERFAMILY L domain-like 41 215 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2306 Cre-Chr9:42322828 Cre09g2442 Cre-Chr9:43779032 1.60E-154 dispersed
Cre09g2442 Cre-Chr9:43779032 Cre11g0754 Cre-Chr11:4739809 1.20E-115 dispersed
Cre10g2243 Cre-Chr10:36818930 Cre09g2442 Cre-Chr9:43779032 8.10E-06 dispersed
Cre05g1050 Cre-Chr5:9722473 Cre09g2442 Cre-Chr9:43779032 3.60E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64439 PF00069 Pkinase 2.10E-30 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2442 - - - 0.0