Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2455 ATGAATGGGAACAGCACTGTGAATGGTAATGGGAATGTAGGAGGAGTCAGTAACGCGGAATGGGAGCTTATTCGGAGGTACCACAGGAACGAGCCTGCTGAGAACCAGTGCACCTCTCGGCTAGTTAAACGCATTAAAGCTCCTGTTCCTCTTGTATGGTCTCTGGTAAGGAGGTTTGATCAACCACAAAGATACAAACCTTTTGTTAGCAGATGTGTTTTGAAGGGAAACCTTGAAATCGGGACTCTCAGAGAAGTTGATGTGAAATCGGGGCTTCCTGCCACAACGAGTACAGAGAGATTGGAACTCCTTGATGATGACAGGCACATCCTTAGCATGAGGATTGTTGGCGGAGATCACAGACTAAAGAATTACTCTTCAATCATTTCCCTGCATCCAGAAATCATTGATGGAAGACCAGGGACTTTGGTAATTGAATCATTTGTGGTGGATGTGCCTGAAGGAAACACGAAGGATGAGACTTGCTACTTTGTGGAAGCCTTGATTAAATGCAATCTCAAGTCACTTGCTGATGTTTCAGAGCGGCTTGCAGTGCAAGATCGCACTGAGCCACTTGATAGGATCTAA 588 45.41 MNGNSTVNGNGNVGGVSNAEWELIRRYHRNEPAENQCTSRLVKRIKAPVPLVWSLVRRFDQPQRYKPFVSRCVLKGNLEIGTLREVDVKSGLPATTSTERLELLDDDRHILSMRIVGGDHRLKNYSSIISLHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVEALIKCNLKSLADVSERLAVQDRTEPLDRI 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43872975 43875146 - CrPI670011_09g024550.1 Cre09g2455 509123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2455 195 FunFam Abscisic acid receptor PYL9 10 190 - -
Cre09g2455 195 Gene3D - 5 190 IPR023393 -
Cre09g2455 195 CDD PYR_PYL_RCAR_like 37 181 - -
Cre09g2455 195 Pfam Polyketide cyclase / dehydrase and lipid transport 41 181 IPR019587 -
Cre09g2455 195 SUPERFAMILY Bet v1-like 37 179 - -
Cre09g2455 195 PANTHER OS03G0300400 PROTEIN-RELATED 42 169 IPR050279 GO:0004864(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0009738(PANTHER)|GO:0010427(PANTHER)|GO:0038023(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2455 K14496 - - csv:101221554 372.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0915 Cre-Chr9:9222524 Cre09g2455 Cre-Chr9:43872975 2.70E-72 dispersed
Cre09g2455 Cre-Chr9:43872975 Cre10g2343 Cre-Chr10:37595738 4.10E-48 dispersed
Cre05g1061 Cre-Chr5:9857176 Cre09g2455 Cre-Chr9:43872975 1.60E-84 wgd
Cre05g0168 Cre-Chr5:1703152 Cre09g2455 Cre-Chr9:43872975 1.10E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g878 . . . . . . . . . . Cma02g01106 Cma15g01033 Car02g00916 Car15g00965 . . . . . . . . . . Cla01g00054 Cam01g0052 Cec01g0052 Cco01g0054 Clacu01g0054 Cmu01g0052 Cre09g2455 Cone1ag0961 Cone5ag0647 . . . . Chy09g01427 Cme06g01103 . . . . . . . . . Cmo02g01134 Cmo15g01095 . . . . . Cpe13g00309 . . . . . . . . . . . . . . Lsi09g00033 Csa03g02200 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000330 3 6 1 3 1 4 8 4 4 4 3 4 8 4 5 7 4 10 8 4 4 4 3 4 4 3 3 8 6 3 137