Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2458 ATGCCCATTCCCACTCTCTATACCCACCAACCAAACGACCCCTTAAGTTTCTTCTTCCTTGCCCCTCTTCTCATTTCGGAGTTCCCTCAAGAAACTTGTTTCAACTGTAGAAATTGGACTGAGAAGATTGTGAGGTTTCAGGACTGGAGTTCAGATAAAACTTCAAGGGGGTTATATTCTGCAGACAACACTTTAAATGCTGGAAAGATTGGGACAAGAGCTGACTTAGTTTCAGAGAAGCCTCACAAAGAATTGGAAACTGGTTCTTACAGGATTAATAGAATTAAGAAATCCTTGAAATCATCTTCTTTCAATAAATTTATGTCCAGAGGTCTTGGAACTGGAAAAAAAGTGCTTGACCCACAGGGTCCCTTTCTCCAGAAGTGGAATAAGATATTTGTGTTGTCTTGTGTGATTGCAGTCTCGTTGGATCCTTTGTTCTTTTATGTCCCTGTGATTGATGACGATAGGAAATGTCTTGGGTTGGATCAGAAGATGGAGATTACAGCTAGTGTGTTACGTTCATTCACTGATATATTTTATATATTACATATTGTTTTTCAATTTCGTACGGGATTTATCGCCCCCTCTTCTCGAGTATTTGGAAGAGGTGTTCTAGTTGAAGATGCTTGGGAAATAGCAAAGAGATATCTCTCATCATACTTTTTGATCGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATTCTGATAGTTATTCCAAACATGAAAGGCTCAAGGTCGTTGAATACCAAGGACTTGCTGAAATTTGTTGTTTTCTTCCAGTATGTGCCACGGTTTATCAGAATCTATCCATTATATAGAGAAGTTACAAGAACATCTGTACTCACTGAAACTGCATGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGCTGGCAAGTCATGTCTTTGGAGCGTTCTGGTACTTGTTCTCTATAGAACGAGAAACTACATGTTGGCGGAGGGCTTGTCATAATCGTACTGGCTGTGTTTCTAATTCACTATATTGTGATGTCAGTCCAGGAGACAACTCATTTTTAAATATTTCATGTCCTCTAGTTGATGACAATCCTCCTTTTGATTTTGGAATATTTCTTGATGCTCTTGAATCTGGTGTTGTGGGGTCGATGAATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGAGAAATCTAAGTTCCCTGGGTCAAAATCTCCAAACAAGCATTTACGTGTGGGAAATTTGCTTTGCTGTTTTCATCTCCATTTCTGGCTTGGTTCTGTTTTCATTTCTCATCGGGAACATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAAATGAGGGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTTTGCTCCCTGAAAGCCTCCGAGAGCGAATCAGGAGGTATGAGCAGTACAAGTGGCAGGAAACCAGAGGTGTTGATGAAGAGAATCTGATTCGAAATCTTCCAAAAGATCTCAGAAGGGATATTAAACGCCATCTTTGCTTGTCTTTGCTAATGAGGGTACCCATGTTTGAAAAAATGGATGAACAATTGTTGGATGCAATGTGTGACCGTCTCAAGCCAGTACTATACACGGAGGAAAGTTTCATTGTTAGGGAAGGAGACCCGGTAGACGAGATGATCTTTATTATGCGAGGCAAGTTATTGTCTGTAACTACGAATGGGGGAAGAACTGGTTTCTTTAATTCTGAACACCTCAAGGCGGGTGATTTCTGTGGAGAAGAGTTACTGACATGGGCTCTGGATCCACACTCCTCATCCAATCTGCCAATTTCGACGAGAACTGTTCGAACACTTTCAGAAGTTGAAGCATTTGCTTTGAAGGCTGATGACTTAAAGTTTGTAGCCTCACAGTTCCGAAGGCTTCACAGCAAGCAGCTGCGGCACACTTTCAGGTTTTATTCGCAGCAATGGAGAACATGGGCAGCATGTTTTATTCAAGCAGCATGGCGTCGATACCGCAGAAAGAAGCATGAGCAGACCCTCTTGGAAGAAGAGAACAGGTTAAAGGATGCATTGGCCAAGACAGGTGGGAGTTCTCCAAGTTTAGGTGCCACCATCTATGCATCCAGATTTGCAGCTAACATCCTTAGAACGATTCGACGTACAAGCTCACGGAAGGCCAGGATTCCAGAGAGAATACCACCGATGTTGCTTCAGAAACCAGCAGAACCTGATTTTACCTCTGAAGAGAATAGTCGATGA 2244 42.07 MPIPTLYTHQPNDPLSFFFLAPLLISEFPQETCFNCRNWTEKIVRFQDWSSDKTSRGLYSADNTLNAGKIGTRADLVSEKPHKELETGSYRINRIKKSLKSSSFNKFMSRGLGTGKKVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVIDDDRKCLGLDQKMEITASVLRSFTDIFYILHIVFQFRTGFIAPSSRVFGRGVLVEDAWEIAKRYLSSYFLIDILAVLPLPQVVILIVIPNMKGSRSLNTKDLLKFVVFFQYVPRFIRIYPLYREVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWRRACHNRTGCVSNSLYCDVSPGDNSFLNISCPLVDDNPPFDFGIFLDALESGVVGSMNFPQKFFYCFWWGLRNLSSLGQNLQTSIYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLIRNLPKDLRRDIKRHLCLSLLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESFIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYRRKKHEQTLLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIRRTSSRKARIPERIPPMLLQKPAEPDFTSEENSR 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43895116 43904516 + CrPI670011_09g024580.1 Cre09g2458 509126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2458 747 SUPERFAMILY cAMP-binding domain-like 445 638 IPR018490 -
Cre09g2458 747 Gene3D Helix hairpin bin 442 507 - -
Cre09g2458 747 Pfam Ion transport protein 131 443 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2458 747 SUPERFAMILY Voltage-gated potassium channels 120 438 - -
Cre09g2458 747 CDD CAP_ED 516 647 IPR000595 -
Cre09g2458 747 Gene3D Jelly Rolls 514 634 IPR014710 -
Cre09g2458 747 FunFam Cyclic nucleotide-gated ion channel 1 514 632 - -
Cre09g2458 747 FunFam Cyclic nucleotide-gated ion channel 1 443 507 - -
Cre09g2458 747 Gene3D - 131 440 - -
Cre09g2458 747 Coils Coil 668 688 - -
Cre09g2458 747 SMART cnmp_10 516 647 IPR000595 -
Cre09g2458 747 ProSiteProfiles cAMP/cGMP binding motif profile. 516 600 IPR000595 -
Cre09g2458 747 Pfam Cyclic nucleotide-binding domain 537 628 IPR000595 -
Cre09g2458 747 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 55 734 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1767 Cre-Chr2:30984171 Cre09g2458 Cre-Chr9:43895116 3.00E-208 dispersed
Cre05g0164 Cre-Chr5:1665106 Cre09g2458 Cre-Chr9:43895116 2.60E-30 dispersed
Cre05g0165 Cre-Chr5:1666185 Cre09g2458 Cre-Chr9:43895116 7.00E-142 dispersed
Cre05g1066 Cre-Chr5:9916928 Cre09g2458 Cre-Chr9:43895116 4.70E-136 dispersed
Cre05g1067 Cre-Chr5:9928768 Cre09g2458 Cre-Chr9:43895116 1.30E-144 dispersed
Cre09g2458 Cre-Chr9:43895116 Cre10g1605 Cre-Chr10:30159402 1.60E-206 dispersed
Cre05g1065 Cre-Chr5:9894485 Cre09g2458 Cre-Chr9:43895116 5.70E-144 wgd
Cre05g0163 Cre-Chr5:1658782 Cre09g2458 Cre-Chr9:43895116 1.70E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2458 K05391 - csv:101221781 1357.04