Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre09g2465 | ATGATCAACAACAACTACAACAAGCTTCACTCCTCCCGCTCCCTCGACTCTACTCCGGCCACCTCCTTCCACCTTTCCCCCAATGATCCTCCGCCACCTCCACCCTCCTCCTCCCTCCGCCGCCGCTCTCGTATCCTTATCATCTCCTTCCTCTCCGTCCTCCTCATTGCTGCCTCCGTGGTCTCTGCCGCCGTGCTCGTCCGGTCCCATATCGCTTCGAGCCAACCCAATTTCCCTCACAACAAGCCCTCCCAAGCCATCTCCCGAGCCTGCAGCCACACTCTGTACCCATCTCTCTGCCTCTCTTCTCTTCTCTCCTTCCCCGGCTCTCTCTCCGCCGACGCCCATGACCTTGTTCACATCTCTCTCAACTTAACTCTTCAACATCTCACCAAAGCTCTTTATTCCACTTCTCAAATCCCCATCTCCCAAATCTCCAACGACCCTTTAGCCCATTCCGCTTATGAAGACTGCACGGAGCTTCTAAACGACGCCGTTGACGCTTTTTCCCTCTCTCTCTTTTCCACTGAAGCTTCTAATCACGACGTCATGACGTGGCTTAGTGCGGCATTGACTTATCATGACACGTGTACGGATGGATTTGCGGATGTGGCTGACTTGGCAGTTAAGGATCAGGTGGAGGCGAAGTTGAGTGATTTGTCGGAGATGATTAGTAATTCTTTGGCTATATTTTCTGGGTTTGGTGGTGGGGATTTGCCGGTGGAGAATAGGCGCCGCCGCCGGTTGATGGAGAGTGGTACACAGCCGTGGGCGGCGGAGAATGGTGGTGATGGGGGTTTTCCACAGTGGGTGAGTGGGAAGGATCGGAGGCTTTTGGCTGCTCCTATTTCGGCGATTCAGGCGGATATTGTGGTGGCTAAGGATGGTTCTGGCAAATTCAAGACGGTGGCTGAGGCCATTGACGCGGCTCCGTCGTCGAGTGGCCGCCGGATTGTTATCTACATTAAGGCCGGAAAGTACGAAGAGGAGAATTTGAAGGTGGGAAGGAAGAAAACAAACTTGATGTTTGTGGGAGATGGAAAGGGCATAACGGTCATTTCAGGTGGCAAAAGTATCTTTGACAAAGTTACCACTTTTCGCACCGCCACCTTTGCGGGTTCGGGAACAGGAATAATTTTAAGAGACATGACGTTTGAGAACACGGCAGGAGCAAGCAAGCACCAAGCAGTGGCATTGCGCTTGAGCGCTGACCATGCTGTGGTATACCGTTGCAACATCATTGGTTATCAAGACACTCTCTATGTGCACTCAAACCGCCAATTCTTTCGGGAATGCGACATCTACGGTACGGTGGACTTCATCTTTGGGAATGCGGTAGTTGTGTTCCAAAGTTGCAACATCTATGCCCGAAAGCCAATGGCGGGGCAAAAGAACACCATCACTGCCCAAGACCGGAAGGACCCAAACCAAAACACTGGAATCTCCATCCATGCTTGCAAGATCATTGCCACTAGCGACCTCGAAGCCTCCAAGGGTTCTTTCCCCACCTACCTGGGTCGTCCTTGGAAATTATACTCTAGAGTGGTGTACATGGTATCTTCCATGGGCGACCATATTCACCCACGTGGTTGGCTGGAGTGGCAAGGTTCTTTTGCTCTCGATACTCTTTACTACGGCGAGTATATGAATTCTGGGCCAGGTGCCGCCGTGGGGCAACGGGTCAAGTGGCCGGGTTATCGGGTCATAACTTCCACGGTAGAAGCCTCCAAATTTACTGTTGGACAATTCATTTATGGCTCTTCTTGGTTGCCCTCCACTGGAGTCTCCTTTTCAGCTGGATTATCCGCTAACTAA | 1815 | 51.96 | MINNNYNKLHSSRSLDSTPATSFHLSPNDPPPPPPSSSLRRRSRILIISFLSVLLIAASVVSAAVLVRSHIASSQPNFPHNKPSQAISRACSHTLYPSLCLSSLLSFPGSLSADAHDLVHISLNLTLQHLTKALYSTSQIPISQISNDPLAHSAYEDCTELLNDAVDAFSLSLFSTEASNHDVMTWLSAALTYHDTCTDGFADVADLAVKDQVEAKLSDLSEMISNSLAIFSGFGGGDLPVENRRRRRLMESGTQPWAAENGGDGGFPQWVSGKDRRLLAAPISAIQADIVVAKDGSGKFKTVAEAIDAAPSSSGRRIVIYIKAGKYEEENLKVGRKKTNLMFVGDGKGITVISGGKSIFDKVTTFRTATFAGSGTGIILRDMTFENTAGASKHQAVALRLSADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAVVVFQSCNIYARKPMAGQKNTITAQDRKDPNQNTGISIHACKIIATSDLEASKGSFPTYLGRPWKLYSRVVYMVSSMGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSTVEASKFTVGQFIYGSSWLPSTGVSFSAGLSAN | 604 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 43976047 | 43981671 | + | CrPI670011_09g024650.1 | Cre09g2465 | 509133 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre09g2465 | 604 | Gene3D | - | 283 | 601 | IPR012334 | - | |
| Cre09g2465 | 604 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Cre09g2465 | 604 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Cre09g2465 | 604 | NCBIfam | pectinesterase inhibitor domain | 60 | 232 | IPR006501 | GO:0004857(InterPro) | |
| Cre09g2465 | 604 | SMART | PMEI_2 | 82 | 230 | IPR006501 | GO:0004857(InterPro) | |
| Cre09g2465 | 604 | Pfam | Plant invertase/pectin methylesterase inhibitor | 86 | 230 | IPR006501 | GO:0004857(InterPro) | |
| Cre09g2465 | 604 | ProSitePatterns | Pectinesterase signature 2. | 434 | 443 | IPR033131 | - | |
| Cre09g2465 | 604 | PANTHER | PECTINESTERASE | 44 | 592 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Cre09g2465 | 604 | CDD | PMEI-like_3 | 90 | 236 | - | - | |
| Cre09g2465 | 604 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 84 | 234 | IPR035513 | - | |
| Cre09g2465 | 604 | Pfam | Pectinesterase | 289 | 586 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Cre09g2465 | 604 | SUPERFAMILY | Pectin lyase-like | 284 | 600 | IPR011050 | - | |
| Cre09g2465 | 604 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 85 | 232 | IPR035513 | - | |
| Cre09g2465 | 604 | FunFam | Pectinesterase | 283 | 601 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre09g0532 | Cre-Chr9:4994228 | Cre09g2465 | Cre-Chr9:43976047 | 2.90E-139 | dispersed | |
| Cre09g2465 | Cre-Chr9:43976047 | Cre10g0810 | Cre-Chr10:8413219 | 4.90E-108 | dispersed | |
| Cre10g0267 | Cre-Chr10:1566735 | Cre09g2465 | Cre-Chr9:43976047 | 9.00E-121 | transposed | |
| Cre05g1078 | Cre-Chr5:10103828 | Cre09g2465 | Cre-Chr9:43976047 | 3.50E-207 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre09g2465 | - | - | - | 0.0 |