Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2496 ATGGGCGAGGCCGTGGTCGTCAGCTCTGAGGATGTGGATGTGGATGTGGATGTTGATTATGTCAGGCTCCACCACAACGACGATATGGCGGACGCAGAGAGTATGGGCACTCACAGACCTAACAGAGATGGCAGTTCGACTGGGTTTGGGGTCGGGATTAAGTGGGAGCGCTTCTTGCCCAAGATGATGCTCAGGGTTTTGCTCGTCGAAGCCGACGATTCCACCAGACAGATTATCACTGCCCTTCTCCGCAAGTGCTGCTACCGAGTTGCTGCTGTTCCTGATGGCTTGAAAGCATGGGAGATTCTCAAAGAAAGGCCCCGTAATGTAGATCTTATATTGGCAGAAGTTGAATTGCCATCAATCTCTGGATTTGCTCTGCTAACTTTGATCATGGAGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCCTCCGAAGATTCTATCAGCACTGTTTATAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTCAAGCCCTTAAGGAGAAATGAGCTGAGAAATCTGTGGCAACATGTTTGGAGAAGACAAGCACCCAATGTGAGAACTGACGTTCAAGAAAAGGTTGAAGTCACTTCTGAAAATGAGACTGCAAGCAATCACTCAACTGGTTGTGCTGCTGGAGTTCAGAGGAATAGCAAAAACATTGAGAAAGGGAGTGATACTCAGAGCTCTTGTACGAAGGTAGATTTTGAGGCTGGAAGTAAGATGCAGGAAAACTCACAGCCTAGGCAGGGAAAAGCCTTTCCCAACGACTTCGAGCTACAAAAAGATGAACATCACATCAATTTGAGTCAAAGATTGTTTATGCATGAAAACGAAACTGGAGGATTGGCAATGAGTTGCTATGTCAATGCTGATTTACCAATCACACTAAGCATGGGTCTTGAGCCGATCAATGATGGGAGAAATCCTAATATTGCTAGTGAAGTAGGTGATGATAAGGATTTGCTTGCCAACCCATCCAGAGATGCAACTGCCTTGGATCATGCCTGTATCAAGTATCCCGATAACTACCAAAAAAGTTCTCCTTCCCACAATTTTGCTGCAAATAATTTCGGCTCTGCTCTTCATTTGGATCTTTCTCTGAGAAGATGTCAACCTAACGATTTTGAGGAACGTGCTACGGGACGGGCAACCCTCAAACATTCTAGTGCTTCAGCTTTTACAAGATACACTTTCAGGCCATTGCAATCACTTCAAGCAAAATCAAGCAGTATCTGTGATGAGCAAAAAGAATTTGGAAGTAACCCCGAGCATATTGGAAGTTTTGCTGCTACTTCTACCTCTGATGCCATTAATCCTACGCCAAATCTGCAAAAGAGTGATACTTCTATGCCTATGATCACGAGTCAATCTACTCATTCTGAAGTTGCTAAATCAAGTACTTCAGAGACGGTAATCCCTCTTCAAGTTTCAGTGAAAGATTTGATGTCTGATAATCAACGCTCGGGCTCAGGCTATAGCTCTTTACCTCCTCACAACTTCTGCACACAACGTGGTAGCCCATCGTCTCCATGCCGAACTTCAGCCACTCATCCAGAACTCATCTTTGGGAGACAGACGGTTTATCCCTCAAACTTTGAGAATCATAATTTGGAGCAATTTCTGAACCAGCATCACAACATAAGCAGTCCAGCAAGCAGAAAGATAGAAAACTCGGGCCAGTCTGCAGAAAATCAAGGCCATATATCACCTACCACTGATCACAGTGCAAACAGTAATGTATGTTGTGGCAATACAACTCATGTTGGAAGTGTGGGATATCCTAGCACCTGCGGAAGCAACAGCAATTTAGATTGGACTGGGGTTGCAAGAGTTACAGCTGAGAGCAGAAATGAAGAAGCTTTGTTTTCTCAAGGAGGAGATTCTCACCGGTCCAGTCAAAGAGAAGCAGCTCTAACAAAGTTCCGACTGAAAAGAAAAGATAGATGTTATGAGAAAAAGGTCCGTTATGAGAGTAGAAAAAAGCTGGCAGAGCAGCGTCCTAGAGTGAAGGGACAGTTTGTCCGTAGAGTATGTACTGATCCATTGCCTGCAGAAACCAACGACTATACATCCAACGGTTAG 2097 44.35 MGEAVVVSSEDVDVDVDVDYVRLHHNDDMADAESMGTHRPNRDGSSTGFGVGIKWERFLPKMMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNVDLILAEVELPSISGFALLTLIMEHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHVWRRQAPNVRTDVQEKVEVTSENETASNHSTGCAAGVQRNSKNIEKGSDTQSSCTKVDFEAGSKMQENSQPRQGKAFPNDFELQKDEHHINLSQRLFMHENETGGLAMSCYVNADLPITLSMGLEPINDGRNPNIASEVGDDKDLLANPSRDATALDHACIKYPDNYQKSSPSHNFAANNFGSALHLDLSLRRCQPNDFEERATGRATLKHSSASAFTRYTFRPLQSLQAKSSSICDEQKEFGSNPEHIGSFAATSTSDAINPTPNLQKSDTSMPMITSQSTHSEVAKSSTSETVIPLQVSVKDLMSDNQRSGSGYSSLPPHNFCTQRGSPSSPCRTSATHPELIFGRQTVYPSNFENHNLEQFLNQHHNISSPASRKIENSGQSAENQGHISPTTDHSANSNVCCGNTTHVGSVGYPSTCGSNSNLDWTGVARVTAESRNEEALFSQGGDSHRSSQREAALTKFRLKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRRVCTDPLPAETNDYTSNG 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44218898 44223420 + CrPI670011_09g024960.1 Cre09g2496 509164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2496 698 CDD psREC_PRR 66 169 - -
Cre09g2496 698 ProSiteProfiles CCT domain profile. 639 681 IPR010402 GO:0005515(InterPro)
Cre09g2496 698 SMART REC_2 64 179 IPR001789 GO:0000160(InterPro)
Cre09g2496 698 MobiDBLite consensus disorder prediction 488 519 - -
Cre09g2496 698 ProSiteProfiles Response regulatory domain profile. 65 183 IPR001789 GO:0000160(InterPro)
Cre09g2496 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 55 245 IPR045279 GO:0009736(InterPro)
Cre09g2496 698 SUPERFAMILY CheY-like 58 190 IPR011006 -
Cre09g2496 698 Gene3D - 62 250 - -
Cre09g2496 698 Pfam Response regulator receiver domain 66 177 IPR001789 GO:0000160(InterPro)
Cre09g2496 698 MobiDBLite consensus disorder prediction 555 581 - -
Cre09g2496 698 Pfam CCT motif 639 681 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0965 Cre-Chr4:28270709 Cre09g2496 Cre-Chr9:44218898 1.90E-43 dispersed
Cre09g2496 Cre-Chr9:44218898 Cre11g0834 Cre-Chr11:5529015 3.70E-19 dispersed
Cre09g2496 Cre-Chr9:44218898 Cre01g1541 Cre-Chr1:28617391 9.90E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54460 PF00072 Response_reg 7.00E-21 CL0304 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2496 K12130 - csv:101209788 1223.38