Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2503 ATGCCACCTGCCCCAGTTGTCGAGTCCGTCGAGCCTGAGAAGGAGAGCCACCAATTCTCGTCTACAGCCGAATTGGAGAAGAAGCTTGAGTGTGATGACAAACCGATTGTTGAAGACGTGGATGACGACGAGGATGATGACGAGGATGATGAAGATGACGGAAAGGAGAACGGGGCTCTTGGTGGGTCTCCACTCCATATCTCTTTTTCTTGGAGCCTAACCAAAATTCCCTCTCCTCCCCTCTCCATGTTTTCTGCCACTACAAATGTCTTCGTTCTTAACCCTGGATTCCTTGCTGCTCAATCTTTTGTTATTAGTTTTCATGAATTAGCTAAGATGGAGATGGTTTTCTGCATGATTGTTCTTTATGCAAGTAAATCAATGATTTTCATGCTCCGCTATCAATTTAAACTTAGTCAGTTTTGCATGAGGAAAGAATCGGTTCTGCAATTTTTGTTAGGGAGGCACAGTTTAAGGGGTTCAAATGAGAGTTCAAAGCAGAGCCGGAGTGAAAAGAAGAGTCGCAAGGCTATGCTGAAGCTGGGTATGAAACCAGTTACTGGGGTTAGCAGAGTAACAATTAAAAGAACAAAAAACATTCTGTTTTTCATATCAAAACCTGATGTGTTCAAAAGTCCAAATTCTGAGACGTATGTGATATTTGGAGAGGCAAAGATAGAGGATTTGAGTTCTCAGTTGCAGACACAAGCTGCTCAGCAATTCAAGATGCCAGACATGGGGCATGTGATGCGAAAACCAGACATTTCTGGTACTGTTGAAGCCGGAGCATTGGGTGATGAGGAAGAGGAAGAAGAGATCGATGAATCTGGGGTGGAGGCTAGGGACATTGATTTGGTAATGACACAGGCTGGGGTCTCCAGGACCAAGGCCGTAAAAGCTCTCAAGACTCACGACGGGGATATTATGGAGCAGGGGAAACAGGGAGTGGTAGTTAAATTCACTCCTCCTCAGAACCCTGTGGAGCAAATTCAGGCTCGTTTCAAGGAACTAGAAAATGGGTTCAGAACGTGGTTGGCCAAGCAGTCTCTCCCTGTTGAGGCCGCCGTTGTCACCGTCACCAGCGCTGCGCAGGGCGCTGCTATTGGTGGTTTTATGGGCACTCTCACCAACGATGTTTCTTCTTCTCTGCCCACTCCTCAAGCCGGCCTCAACCCTCAAGCCATGGCTTCTTTCAAGCAGGCCCAGGCTCTTGCTGGAGGTCCCTTAGTACAAGCTCGCAACTTTGCCGTCATGACAGGTGTTAATGCTGGCATATCTTCTGTTATGAAGAGATTGAGAGGCAAGGAGGATGTCCAGTCAAGCATGGTGGCTGCTTTTGGGTCTGGGGCTATGTTTTCATTGGTGAGTGGAATGGGAGGTCCAAATCAGGCAGCAAACGCTGTTACCTCTGGTCTTTTTTTTGCCCTCGTTCAAGGTGGACTTTTCAAGTTAGGGGAAAAATTTTCTCAACCACCTGTGGAAGATATGTACTATGCTAAAACAAGAAGCATGTTGAATAACCTTGGCCTACAAAGTTATGAGAAGAATTTCAAGAAAGGCTTATTGACCGATACCACTTTGCCTCTGCTCACTGATAGTGCGCTTAGAGATGTCAAAATTCCCCCAGGACCAAGGCTACTCATTCTGGATCACATTCAGAGGAACCCAGAGCTAAGAGGGAGATGA 1686 46.5 MPPAPVVESVEPEKESHQFSSTAELEKKLECDDKPIVEDVDDDEDDDEDDEDDGKENGALGGSPLHISFSWSLTKIPSPPLSMFSATTNVFVLNPGFLAAQSFVISFHELAKMEMVFCMIVLYASKSMIFMLRYQFKLSQFCMRKESVLQFLLGRHSLRGSNESSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQTQAAQQFKMPDMGHVMRKPDISGTVEAGALGDEEEEEEIDESGVEARDIDLVMTQAGVSRTKAVKALKTHDGDIMEQGKQGVVVKFTPPQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAIGGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGEKFSQPPVEDMYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTDSALRDVKIPPGPRLLILDHIQRNPELRGR 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44266660 44275178 - CrPI670011_09g025030.1 Cre09g2503 509171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2503 561 Pfam HYPK UBA domain 278 309 IPR044034 -
Cre09g2503 561 SMART NAC_2 171 227 IPR002715 -
Cre09g2503 561 FunFam Nascent polypeptide-associated complex (NAC), alpha subunit 178 230 - -
Cre09g2503 561 MobiDBLite consensus disorder prediction 1 61 - -
Cre09g2503 561 Gene3D - 177 230 IPR038187 -
Cre09g2503 561 Pfam NAC domain 171 226 IPR002715 -
Cre09g2503 561 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 11 308 IPR016641 GO:0005737(PANTHER)|GO:0005854(InterPro)|GO:0006612(PANTHER)|GO:0051082(PANTHER)
Cre09g2503 561 FunFam mitochondrial import inner membrane translocase subunit TIM22-like 502 561 - -
Cre09g2503 561 SUPERFAMILY SAM/Pointed domain 493 555 IPR013761 -
Cre09g2503 561 Gene3D - 278 310 - -
Cre09g2503 561 Pfam SAM domain (Sterile alpha motif) 505 554 IPR001660 GO:0005515(InterPro)
Cre09g2503 561 Gene3D - 501 559 IPR013761 -
Cre09g2503 561 CDD NAC_NACA 182 229 - -
Cre09g2503 561 Pfam Tim17/Tim22/Tim23/Pmp24 family 354 475 - -
Cre09g2503 561 ProSiteProfiles NAC A/B domain profile. 168 233 IPR002715 -
Cre09g2503 561 MobiDBLite consensus disorder prediction 36 55 - -
Cre09g2503 561 MobiDBLite consensus disorder prediction 10 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2503 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0623 Cre-Chr4:23584879 Cre09g2503 Cre-Chr9:44266660 1.10E-47 dispersed
Cre04g0624 Cre-Chr4:23602255 Cre09g2503 Cre-Chr9:44266660 5.30E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g953 . . . . . . . . . . Cma02g01148 . Car02g00953 . . Cpe05g00575 . . . . . . . . Cla01g00001 . . . Clacu01g0001 Cmu01g0001 Cre09g2503 Cone1ag1027 Cone5ag0734 . . . . . . . . . Bda15g00799 . . . . . Cmo02g01184 . . . . . . . Bhi12g00740 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007153 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 0 1 2 1 1 37