Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0267 ATGCTTTCGGCTACTTCTCCACCGGATCTTGTGAAGATAGAGTGTTTGACTGTACCCTCCTCCCAATTCTCTAACTCAATCCTCTCCACCATCGATGTTGTACAACAGGTTATCGCCATTTTCTCTCCATTCACTAAATTACTCGGTGATTTACGCCTTTCCACCGCCGTTTCCGACTGTCTCGATTTGCTTGACTCTTCTGCTGACCAGTTGAGCTGGTCCCTCTCCGCCACCCAAAATCCCAAGGCTAAAGACCACAGCACCGGAGATTTGAGTTCCGATCTGAAGACATGGCTGAGCGCTGCAGTGGTTAATCCAGAAACATGCATGGATGGATTTGAGGGCACCAATAGCATTATCAAAGGTCTAGTATCTGGAAGCATCAACCAGTTAACTTCACAGCTCTACGAGCTTCTTTCCATGGTCAAATCAATCCCCAATCAGCCGGCGGCTGACTTTCCTTCCTGGGTGAAATCTGAGGACCGGAACCTGCTGCAACTAAATGACTTCGCCGCCGATGCCACTGTGGCCGCCGATGGGACTGGGGATTTCACCAGTGTGATGGATGCTGTATTAGCAGCCCCTGACAATAGCATACAACGTTATGTTATATACATAAAGAGGGGTGTGTATTTTGAGAACGTGGAGATCAAGAAGAAGAAATGGAATCTAATGATGATTGGAGATGGAATTGATGCCACCATCATATCGGGTAATCGGAGTTTTATTGACGGTTGGACAACATTCCGTTCAGCGACATTTGCTGTAAGTGGAAGAGGATTCATAGCTCGAGACATAACATTCGAGAATACTGCAGGGCCACAGAAACATCAAGCAGTAGCACTTAGATCGGACTCGGATCTGTCGGTATTTTTTAGATGCCGTATTAGAGGATATCAAGACACTCTGTACACGCACACCATGCGCCAATTCTACCGCGAGTGCCAAATCAGTGGCACCGTTGATTTTCTGTTCGGCGATGCCACCGTCGTTTTCCAAAATTGTAGCATCCTCGCGAAGAAAGGTCTTCCCAATCAGAAAAACACCATCACTGCTCAAGGCCGGAAAGACCCAAACCAACCCACCGGCTTCTCCATTCAATTCTGCAACATCTCTGCGGATTCAGATCTTAAACCTTCGGTTAACACCACAGCTACATACCTTGGAAGACCATGGAAAGAATATTCTAGAACCATTATCATGCAGTCATATATGAGCGACGCCATTAGGCCAGAAGGTTGGCTTGAGTGGAACGCCGATTTTGCATTGAAGACACTATTCTACGCCGAGTTTATGAATTATGGACCAGGGGCGGGATTGGCGAAGCGTGTCAATTGGCCTGGTTACCGCCGGCTGAACCAAACTAGTGAAGCTTCTAACTTCACCGTGGCTCAATTCATTGAAGGAAACCTGTGGTTGCCGTCCACCGGTGTCAAATACACTGCAGGATTGGGAGCTAATTAA 1464 47.34 MLSATSPPDLVKIECLTVPSSQFSNSILSTIDVVQQVIAIFSPFTKLLGDLRLSTAVSDCLDLLDSSADQLSWSLSATQNPKAKDHSTGDLSSDLKTWLSAAVVNPETCMDGFEGTNSIIKGLVSGSINQLTSQLYELLSMVKSIPNQPAADFPSWVKSEDRNLLQLNDFAADATVAADGTGDFTSVMDAVLAAPDNSIQRYVIYIKRGVYFENVEIKKKKWNLMMIGDGIDATIISGNRSFIDGWTTFRSATFAVSGRGFIARDITFENTAGPQKHQAVALRSDSDLSVFFRCRIRGYQDTLYTHTMRQFYRECQISGTVDFLFGDATVVFQNCSILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFCNISADSDLKPSVNTTATYLGRPWKEYSRTIIMQSYMSDAIRPEGWLEWNADFALKTLFYAEFMNYGPGAGLAKRVNWPGYRRLNQTSEASNFTVAQFIEGNLWLPSTGVKYTAGLGAN 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1566735 1569142 + CrPI670011_10g002670.1 Cre10g0267 509569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0267 487 PANTHER PECTINESTERASE 29 475 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre10g0267 487 SMART PMEI_2 6 145 IPR006501 GO:0004857(InterPro)
Cre10g0267 487 SUPERFAMILY Pectin lyase-like 171 483 IPR011050 -
Cre10g0267 487 Pfam Pectinesterase 173 470 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre10g0267 487 FunFam Pectinesterase 167 484 - -
Cre10g0267 487 Pfam Plant invertase/pectin methylesterase inhibitor 45 141 IPR006501 GO:0004857(InterPro)
Cre10g0267 487 Gene3D Invertase/pectin methylesterase inhibitor family protein 17 148 IPR035513 -
Cre10g0267 487 Gene3D - 167 484 IPR012334 -
Cre10g0267 487 CDD PMEI-like_4 1 146 - -
Cre10g0267 487 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 143 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1984 Cre-Chr3:36849676 Cre10g0267 Cre-Chr10:1566735 1.10E-132 dispersed
Cre07g1789 Cre-Chr7:33328082 Cre10g0267 Cre-Chr10:1566735 3.20E-109 dispersed
Cre09g2147 Cre-Chr9:40494428 Cre10g0267 Cre-Chr10:1566735 9.00E-07 dispersed
Cre10g0267 Cre-Chr10:1566735 Cre11g0517 Cre-Chr11:2126606 6.10E-101 dispersed
Cre10g0267 Cre-Chr10:1566735 Cre09g2465 Cre-Chr9:43976047 9.00E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0267 K01051 - csv:116402691 895.575