Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0271 ATGCGGTATTATTTGCAAGCGTCCGTCCCAAGTTCCCAACCAAATAAAAGGCCATCGAATCGATTTTCCATAAACACTTGTGGAGGTCCAAGTTCTGATGGCGATCGCTCTCCTTCAAGGCCTGCGGCTCTTGCGCGAGAGAAAGTAGAAACAACGTCGAATTCAAATTTCAGAATCACGTTGCTGAACGGACAATCGGACAGGAGAAGAAGAGGAACGCTAACATATAGGCCATTTTTAGGGTTTCTTTCTGGGTTGCATGTTCGTCAAATTACCACCAAAGATCGAAGCAGCAATTCCTATTTCCAAACATCGTACTTGTTTTCCAGTTGTAGGATTCCCCCTTTGGAACTGGAGATGTGTGACGCGAAGGAGAAACACGAATCTGCACAAGATGTTTCATTTGCTTTAAGTGAAGGCAACCGAGTTAATGTAAAAGGTGAGTTTCATGATTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGCGAAAAAGAGACTGCTTCACCTGAGACTCATGTACAGGAAGTTGTACTTCCTGAGGATAATTTAGATAAACCTACGATTCCTCAGCAATCAAATGAAAATTCTGCGCATTTACTTCCCTTGGATCATGACCAAGAGTTGGACAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGCCCTGATGAGTTGCCCCCAAGGGATCCAGATGCTGCCTTTTCTAACTCTCCCCTGGAAACTGTTCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGATATGCCTGAAACTAAAACTGGTTCTCTTGATGATGCGTCAACAGCAAGTCATGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGGATTCAAACATGAATCACTCATTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCCTTCATGAAGGAGCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCTAAGTTCTATGGGGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTTACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGAGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGACATGCACAACAGTTTCGTGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCCATTATCAAGGATAAGAATGCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAACACGTACAAAATCACCAAAACCACAGTTGGATGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAACGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTTCGTGAGGAGGTGCGTGTCCAATCTGATCCAGCAGGACGTTTGGTCATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACATCAGACTTCTGCTGTTGTCACCTTACACGGACAGTTGTTTGTTCGCGTTCCATTTGAACAGTTGGAATGA 1887 44.3 MRYYLQASVPSSQPNKRPSNRFSINTCGGPSSDGDRSPSRPAALAREKVETTSNSNFRITLLNGQSDRRRRGTLTYRPFLGFLSGLHVRQITTKDRSSNSYFQTSYLFSSCRIPPLELEMCDAKEKHESAQDVSFALSEGNRVNVKGEFHDSLSVPAEATPNSCEKETASPETHVQEVVLPEDNLDKPTIPQQSNENSAHLLPLDHDQELDKPDAEPASDVKTGPDELPPRDPDAAFSNSPLETVQSSMDAKSEAFDMPETKTGSLDDASTASHDEPVTPHPVSSCVKAETENAIELKVNEDSVTTPHNGDSNMNHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNALSMQKREKQLKSIGLLKRKKPSYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1617558 1625121 + CrPI670011_10g002710.1 Cre10g0271 509573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0271 628 FunFam AT-rich interactive domain-containing protein 3 520 628 - -
Cre10g0271 628 Gene3D - 524 628 IPR008978 -
Cre10g0271 628 ProSiteProfiles ARID domain profile. 334 425 IPR001606 GO:0003677(InterPro)
Cre10g0271 628 Pfam ARID/BRIGHT DNA binding domain 337 421 IPR001606 GO:0003677(InterPro)
Cre10g0271 628 MobiDBLite consensus disorder prediction 432 455 - -
Cre10g0271 628 MobiDBLite consensus disorder prediction 208 229 - -
Cre10g0271 628 FunFam AT-rich interactive domain-containing protein 3 334 433 - -
Cre10g0271 628 MobiDBLite consensus disorder prediction 152 173 - -
Cre10g0271 628 MobiDBLite consensus disorder prediction 1 33 - -
Cre10g0271 628 MobiDBLite consensus disorder prediction 208 285 - -
Cre10g0271 628 SUPERFAMILY HSP20-like chaperones 539 624 IPR008978 -
Cre10g0271 628 CDD ACD_sHsps_p23-like 547 623 - -
Cre10g0271 628 Pfam Hsp20/alpha crystallin family 545 625 IPR002068 -
Cre10g0271 628 SMART ARID_2 331 421 - -
Cre10g0271 628 SMART bright_3 335 426 IPR001606 GO:0003677(InterPro)
Cre10g0271 628 MobiDBLite consensus disorder prediction 432 449 - -
Cre10g0271 628 SUPERFAMILY ARID-like 328 435 IPR036431 GO:0003677(InterPro)
Cre10g0271 628 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 528 628 IPR002068 -
Cre10g0271 628 CDD ARID 339 421 - -
Cre10g0271 628 Gene3D - 334 432 IPR036431 GO:0003677(InterPro)
Cre10g0271 628 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 175 626 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Cre10g0271 628 MobiDBLite consensus disorder prediction 1 40 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54462 PF00011 HSP20 1.10E-05 CL0190 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0271 - - - 0.0