Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0271 ATGCGGTATTATTTGCAAGCGTCCGTCCCAAGTTCCCAACCAAATAAAAGGCCATCGAATCGATTTTCCATAAACACTTGTGGAGGTCCAAGTTCTGATGGCGATCGCTCTCCTTCAAGGCCTGCGGCTCTTGCGCGAGAGAAAGTAGAAACAACGTCGAATTCAAATTTCAGAATCACGTTGCTGAACGGACAATCGGACAGGAGAAGAAGAGGAACGCTAACATATAGGCCATTTTTAGGGTTTCTTTCTGGGTTGCATGTTCGTCAAATTACCACCAAAGATCGAAGCAGCAATTCCTATTTCCAAACATCGTACTTGTTTTCCAGTTGTAGGATTCCCCCTTTGGAACTGGAGATGTGTGACGCGAAGGAGAAACACGAATCTGCACAAGATGTTTCATTTGCTTTAAGTGAAGGCAACCGAGTTAATGTAAAAGGTGAGTTTCATGATTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGCGAAAAAGAGACTGCTTCACCTGAGACTCATGTACAGGAAGTTGTACTTCCTGAGGATAATTTAGATAAACCTACGATTCCTCAGCAATCAAATGAAAATTCTGCGCATTTACTTCCCTTGGATCATGACCAAGAGTTGGACAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGCCCTGATGAGTTGCCCCCAAGGGATCCAGATGCTGCCTTTTCTAACTCTCCCCTGGAAACTGTTCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGATATGCCTGAAACTAAAACTGGTTCTCTTGATGATGCGTCAACAGCAAGTCATGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGGATTCAAACATGAATCACTCATTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCCTTCATGAAGGAGCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCTAAGTTCTATGGGGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTTACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGAGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGACATGCACAACAGTTTCGTGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCCATTATCAAGGATAAGAATGCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAACACGTACAAAATCACCAAAACCACAGTTGGATGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAACGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTTCGTGAGGAGGTGCGTGTCCAATCTGATCCAGCAGGACGTTTGGTCATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACATCAGACTTCTGCTGTTGTCACCTTACACGGACAGTTGTTTGTTCGCGTTCCATTTGAACAGTTGGAATGA 1887 44.3 MRYYLQASVPSSQPNKRPSNRFSINTCGGPSSDGDRSPSRPAALAREKVETTSNSNFRITLLNGQSDRRRRGTLTYRPFLGFLSGLHVRQITTKDRSSNSYFQTSYLFSSCRIPPLELEMCDAKEKHESAQDVSFALSEGNRVNVKGEFHDSLSVPAEATPNSCEKETASPETHVQEVVLPEDNLDKPTIPQQSNENSAHLLPLDHDQELDKPDAEPASDVKTGPDELPPRDPDAAFSNSPLETVQSSMDAKSEAFDMPETKTGSLDDASTASHDEPVTPHPVSSCVKAETENAIELKVNEDSVTTPHNGDSNMNHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNALSMQKREKQLKSIGLLKRKKPSYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1617558 1625121 + CrPI670011_10g002710.1 Cre10g0271 509573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0271 628 FunFam AT-rich interactive domain-containing protein 3 520 628 - -
Cre10g0271 628 Gene3D - 524 628 IPR008978 -
Cre10g0271 628 ProSiteProfiles ARID domain profile. 334 425 IPR001606 GO:0003677(InterPro)
Cre10g0271 628 Pfam ARID/BRIGHT DNA binding domain 337 421 IPR001606 GO:0003677(InterPro)
Cre10g0271 628 MobiDBLite consensus disorder prediction 432 455 - -
Cre10g0271 628 MobiDBLite consensus disorder prediction 208 229 - -
Cre10g0271 628 FunFam AT-rich interactive domain-containing protein 3 334 433 - -
Cre10g0271 628 MobiDBLite consensus disorder prediction 152 173 - -
Cre10g0271 628 MobiDBLite consensus disorder prediction 1 33 - -
Cre10g0271 628 MobiDBLite consensus disorder prediction 208 285 - -
Cre10g0271 628 SUPERFAMILY HSP20-like chaperones 539 624 IPR008978 -
Cre10g0271 628 CDD ACD_sHsps_p23-like 547 623 - -
Cre10g0271 628 Pfam Hsp20/alpha crystallin family 545 625 IPR002068 -
Cre10g0271 628 SMART ARID_2 331 421 - -
Cre10g0271 628 SMART bright_3 335 426 IPR001606 GO:0003677(InterPro)
Cre10g0271 628 MobiDBLite consensus disorder prediction 432 449 - -
Cre10g0271 628 SUPERFAMILY ARID-like 328 435 IPR036431 GO:0003677(InterPro)
Cre10g0271 628 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 528 628 IPR002068 -
Cre10g0271 628 CDD ARID 339 421 - -
Cre10g0271 628 Gene3D - 334 432 IPR036431 GO:0003677(InterPro)
Cre10g0271 628 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 175 626 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Cre10g0271 628 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0271 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre06g1560 . 64 415 ARID Transcription Factor Family AT1G04880 58.4 1.1e-107 387.5
Cre10g0271 . 326 596 ARID Transcription Factor Family AT1G20910 61.4 1.6e-91 333.6
Cre05g1693 . 16 309 ARID Transcription Factor Family AT1G76110 67.8 5.9e-111 397.9
Cre10g0271 . 305 626 ARID Transcription Factor Family AT1G76510 60.2 1.9e-109 393.3
Cre07g1793 . 1 781 ARID Transcription Factor Family AT3G43240 59.2 9.8e-268 919.8
Cre09g0123 . 92 853 ARID Transcription Factor Family AT3G43240 58.0 3.5e-257 884.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54462 PF00011 HSP20 1.10E-05 CL0190 Cre TR