Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0272 ATGATGTCTCCTTTGGCCTTACCGAGAAATGGAGGCCCTGCCATTGCCATTGCCATTGCCATTGCCATTGCTAGGGCTTTGGTTCCTTGCTGGATCTCTCTTCATCCAACGGCGAAGAAGATAACAATGTCGTCGAACCATTCGGATTTGGAATCTTCAGCTTTTGATACTCAAACTTCGTCCAATCCGATTGCTCCCTTGGATCATCTTCCCTCCACCTCCTCCACCCTCTCTGAATCTGAAGAAAATCCCTGCACATCATCTTCGCCTTCCTCCACTCCACCTCCGATTCACCTACCTCTCTCTTGGCCTACCGATGCCACCCTTTCCCTCCAATGGATACACCATCTCATCGCCGCCTTCGACTGGTCTTCCAAAAATTTACCTCCATCCCAGTTTCCTTCCGTCCTTCCCGTCTCCGTTTTCGACACTCTAATCCTCACCGCTTCTAAAATCCTCCACAAAGAACCCAATTGCCTCAGAATCCTCCAAGACTCAGCCGCCAGCAGCGACTCGACTGTAGTCGTCGTCGGAGACATCCACGGCCAATTTCATGATCTCCTCTTTCTTCTGCAGGATGCTGGTTTTCCTTCTGAAAACCGCTTCTTTGTCTTCAATGGGGATTACGTCGACAGAGGGGCTTGGGGTCTTGAAACTTTTTTGCTCTTATTGGCTTGGAAGGTGTTTATGCCACATCGAGTATTTCTTCTTCGTGGAAACCACGAGTCCAAGTACTGCACATCCGTTTATGGTTTTGAGAAGGAGGTGCTAACCAAGTACGGAGACAAGGGTAAGCATGTCTATCGGAAGTGTTTGGGGTGTTTCGAAGGGCTGCCTTTGGCCTCCATTATTGCTGGATGTGTATATACGGCTCATGGAGGACTTTTCCGCAGCATATCAGTTCCTTCGTCTAAAAGGTCGAAAGGGAAAAAAAATCGTAGGATAATCTTAAATCCCGAAGCCAACGGGTTATCTCTTGGTTCTTTGGAGGAACTATCCAAAGCCAGAAGATCGGTTCTTGATCCCCCATGGGAAGGCTTGAATTTAATTCCGGGCGATGTGTTGTGGTCTGATCCCTCGATGAATCCTGGTCTCTCCCCAAATAAAGAGAGAGGCATAGGTCTCTTGTGGGGTCCTGATTGCACTGAAGAATTCTTGAAAAAATTCAATCTGAAGCTAATTATTAGATCCCATGAAGGTCCTGATGCTAGAGAAAAGAGACCCGGTCTTGCAGGAATGGATCAGGGTTACACGATAGATCATGTTGTAGATTCAGGGAAACTGATTACTTTGTTTAGTGCTCCAGACTATCCACAATTTCAGGCAACTGAGGAGAGATACAAAAACAAAGGTGCATATATTGTTCTAGAACCTCCGAATTTTGATGTTCCAATCATTCATAGTTTTGATGCCATTACTCCACGACCAAAGGTCAATGCATATTACGATTTTGAGGATGTAATTGATTCTGACGAAGAATTAGACTTGGCTTCAATGGCAACTGATCCATGA 1512 46.1 MMSPLALPRNGGPAIAIAIAIAIARALVPCWISLHPTAKKITMSSNHSDLESSAFDTQTSSNPIAPLDHLPSTSSTLSESEENPCTSSSPSSTPPPIHLPLSWPTDATLSLQWIHHLIAAFDWSSKNLPPSQFPSVLPVSVFDTLILTASKILHKEPNCLRILQDSAASSDSTVVVVGDIHGQFHDLLFLLQDAGFPSENRFFVFNGDYVDRGAWGLETFLLLLAWKVFMPHRVFLLRGNHESKYCTSVYGFEKEVLTKYGDKGKHVYRKCLGCFEGLPLASIIAGCVYTAHGGLFRSISVPSSKRSKGKKNRRIILNPEANGLSLGSLEELSKARRSVLDPPWEGLNLIPGDVLWSDPSMNPGLSPNKERGIGLLWGPDCTEEFLKKFNLKLIIRSHEGPDAREKRPGLAGMDQGYTIDHVVDSGKLITLFSAPDYPQFQATEERYKNKGAYIVLEPPNFDVPIIHSFDAITPRPKVNAYYDFEDVIDSDEELDLASMATDP 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1625814 1638297 - CrPI670011_10g002720.1 Cre10g0272 509574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0272 503 MobiDBLite consensus disorder prediction 51 88 - -
Cre10g0272 503 MobiDBLite consensus disorder prediction 51 97 - -
Cre10g0272 503 CDD MPP_PP7 103 483 IPR041754 -
Cre10g0272 503 Pfam Calcineurin-like phosphoesterase 173 399 IPR004843 GO:0016787(InterPro)
Cre10g0272 503 Gene3D - 131 491 IPR029052 -
Cre10g0272 503 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 71 495 IPR051134 -
Cre10g0272 503 SMART pp2a_7 137 473 IPR006186 GO:0016787(InterPro)
Cre10g0272 503 SUPERFAMILY Metallo-dependent phosphatases 134 475 IPR029052 -
Cre10g0272 503 FunFam Serine/threonine-protein phosphatase 121 497 - -
Cre10g0272 503 PRINTS Serine/threonine phosphatase family signature 273 299 IPR006186 GO:0016787(InterPro)
Cre10g0272 503 PRINTS Serine/threonine phosphatase family signature 203 230 IPR006186 GO:0016787(InterPro)
Cre10g0272 503 PRINTS Serine/threonine phosphatase family signature 333 360 IPR006186 GO:0016787(InterPro)
Cre10g0272 503 PRINTS Serine/threonine phosphatase family signature 236 260 IPR006186 GO:0016787(InterPro)
Cre10g0272 503 PRINTS Serine/threonine phosphatase family signature 173 200 IPR006186 GO:0016787(InterPro)
Cre10g0272 503 PRINTS Serine/threonine phosphatase family signature 427 443 IPR006186 GO:0016787(InterPro)
Cre10g0272 503 ProSitePatterns Serine/threonine specific protein phosphatases signature. 237 242 IPR006186 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0470 Cre-Chr1:4062642 Cre10g0272 Cre-Chr10:1625814 5.60E-114 dispersed
Cre10g0272 Cre-Chr10:1625814 Cre11g1709 Cre-Chr11:28733063 3.40E-30 dispersed
Cre10g0272 Cre-Chr10:1625814 Cre01g0257 Cre-Chr1:1903699 2.10E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0272 K04460 - csv:116402529 821.617