Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g0291 | ATGGGAGGCTTATTATATCCTCTTGACTTTGATCACAGAAGCATGGCGAAGAAGATATTTAATCAAAAGAGACGCAATGGTGGGCTGGAAACCCCTCGAAATAGCCTGGAGCTACAGATGGAGAGTTCCCAAAACTATTGTGCTGCAGAAGAAATACCGTACTCCTACCAAATCGATGAAGTGTTTTCTGACAAGGACTATTTAAAAAATGAGGCTTCAATGAAGAAATTAATTGATAAGGAAATATCTACACGCACAAATGTCAAACATAATGGACCAAGCATTGTTGCTCGACTCATGGGGATGGATATGTTGCCCTTGGATGCTAGAAATGGAGTTGAGGTAAGTGACAAGAGGCATAATAGTAAGGGAGTTAAGACTTCGAATAAAGAAACTAATGGCAGGGCCTTGCATTCTCATGCATCCTCCAAATCAAATTCTTCTAAGCAAATGGACCTGCACTCATCTTATCATGATAATGACAAGGATTCTGATCGTTGGAGCAGCAGTCAGAAGATGGGAAAATCACATCGTCGGGAACATCCTCAGGAGGAGGAATTACAAAAGTTCAAAAAGGAATTTGAAGCATGGCAAGCTGCAAGGTTTAGGGAGTGTTCAAGGGTTATTGAAGTTAGTAGCATCAACAGACGGTCACTTGCTCAGGAAGACCTTGCCAAGGAGAAGATGGCACTAAATGCAAACACCAGGAGAGTATCAAGCCAGAAGGTCTCAGCGGAACCCAAAGGTTCAACAGTGGAGATGAAATCATATAGATATATAGGTCTGGATGATAGCATTAAGAGGGAAACATTCCCAGCTGAGCAGAGGGGATCCTTTTCTTTGAGAAGCAAATCCATGGATGCAGATTTTGAACACCCTTGCCTGATAAGTTGTGATCAGAAAGACAAATCGCGTGGCCCAACAAAGATTGTGATTCTCAAGCCTAGTCCTGATAAGATGTGCCTCCATGAAGAGCACTGGAAAAATTCCCCAGGGACCTTAGGAGAAAGAGTAAGTATTGAAGATTTTCTTGATGAGGTCAAGGAGCGGCTGAGATGTGAATTGCAAGGGAAAACTTTGACAAAGGGTTATGTAGCTCGTGGAAGTGGAATAGAGACACCATATAGTGAGAAACCTTCTCACAGAAGACAAATAGCTCGGAACATTGCAACACAGGCTAGAGATAGTGTCACAAGAGACATTGGAATGAATTTACTTCGTTCAGAATCCACGAGATCATACAATAGCGAAGTTCAATTTAATGGGTTAGATTCCCCAGAATTCATAAACAAAGATACCAGAAGATTGTTGTCAGAGAGACTAAGAAATGTTCGAAGGAAAGATTCAGACCTTGATATTGGCAGCTCTAGGTCATCTGTATGTGATCACGAAAGAGTTATGAACCAAGTAGAAACTACTTTGACAAATGGAAAACATACAAATTACTGGGAAGTACTCAGAGATGCAGAAGAAATACAAACTAGATCTTTCAGGCATGAGGCAGACCAAAATGAGGTTCTTCCCAAAGAATTGTCTCCTAGGAATCTTACCAGGTCATTATCAGCTCCAGTGTCAGGAACGTCATTTGGGAAGCTTCTTCTGGAGGACCGCCATATTTTAACTGGTGTCCACATTCAGAGAAAACATGAAGCAAGTGATCATGTGGCGTTGAGTAGCAAAAAGCAGAAGAAAGAGAGGTTTAATTTTAAAGAAAAGGTTTCCAATTTCAGATATAATTTCACTCTTAGAGGAAAGCTGTTTGGTAGAAAGACCCAATCAATTAGCGGATTACATACTGCCAACCTATACTCTTCCAAAGACATCTTGAGTGGACCAACCGTTGTAATGAACTCTGGAGAGCGCCATGAAAGGGAGAATTTCACTGAGGTGCCTCCGAGTCCTGCCTCAGTGTGCAGCAGTGTACAAGAAGAGTTCTGGAAGTTATCTGATCATCACAGTCCTATATCAACTTCAGATGTGACTCCTAGAGAAGAGAACTGTGTTTCCGTCTTTAGGGAGATAAGCTCCAACTTGAAAGAACTTCGGAGACAGCTGAATCAACTTGATTCGGATGATACTGAGGACAAAGTGGAACAGGAACCCGTTGAGTCTGAAATCACAAAACTTGAAGATCCAGCAGAAGCTTACATACGAGACCTTCTAATTGTTTCTGGTATGTATGATGGATCAACAGATAACAACTTTTCACGAAATAACCCAGCTATGAAGCCTATCAGCAGCACGATTTTTGAGGAAGTGGAAGAAGCTTATAGAAAATCAGAGACCAAAAATGAAATCATCGGGAAGGAGCAGAATGAAAATAGTGTAGAACACAAAATGCTATTTGATCTTTTGAATGAAGCACTTCCGATCGTACTTGCACCATGTTTAACAATGTCCAGATTTAGAAGAAAAGTTACTAACTCCTCTATGCCACGGCAGCCTTTGTTCGGAAAAAAACTATTGGATTCTGTATGGGACGTCATCCGCAAGTTTATACACCCTCCAACTGATAGATCTTATTACTTGCTTGATGGGGTTATGGCTCGAGATTTAAATTCAACACCATGGTCCTCATTAATGGATGATGAGTTTAACACAACTGGAAGAGAGGTTGAAGATTGGCTTCAAGTGAAGTTTGTGCACGACCCTTGCTCTTTGCCATATTTTGTAATATCCAGCGTCAGAAAACTTAAACAATCAGCTGCCGCAAGTTCCAGTGTTCAGTTGCTGCAACAAAAGGACGTGGGACTGGGTGAGACAGTGCCAGAGGAAACTCAGACACATCAGCTCTCCTCCACCGCGATTATGATGGAGTGGGAAAAGCCTGAGCAGCAAAATCCTTACCACCATCAGAACCCTCCTCTTCGAGACGATCATCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACTCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCGACACCTGTGCAACTTCAGATCTTAGAGCGTATATTTGAGCAAGGGAATGGAACTCCCAGCAAACAAAAGATCAAAGAGATAACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGTACAGCCCCTGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAGTCACCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAATCCTCTGCACCTTTGGGGGATGACATGTGCTTCCAAAGTCCCGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACGGCGAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGGGAATGAGCAGCTGGCAGGAAAGATTGAAACGCCAGAGAACTATAGTCTTTACCAGCAAGCAGAAGGCTACAGCATGACCGAACGACCATGA | 3648 | 42.85 | MGGLLYPLDFDHRSMAKKIFNQKRRNGGLETPRNSLELQMESSQNYCAAEEIPYSYQIDEVFSDKDYLKNEASMKKLIDKEISTRTNVKHNGPSIVARLMGMDMLPLDARNGVEVSDKRHNSKGVKTSNKETNGRALHSHASSKSNSSKQMDLHSSYHDNDKDSDRWSSSQKMGKSHRREHPQEEELQKFKKEFEAWQAARFRECSRVIEVSSINRRSLAQEDLAKEKMALNANTRRVSSQKVSAEPKGSTVEMKSYRYIGLDDSIKRETFPAEQRGSFSLRSKSMDADFEHPCLISCDQKDKSRGPTKIVILKPSPDKMCLHEEHWKNSPGTLGERVSIEDFLDEVKERLRCELQGKTLTKGYVARGSGIETPYSEKPSHRRQIARNIATQARDSVTRDIGMNLLRSESTRSYNSEVQFNGLDSPEFINKDTRRLLSERLRNVRRKDSDLDIGSSRSSVCDHERVMNQVETTLTNGKHTNYWEVLRDAEEIQTRSFRHEADQNEVLPKELSPRNLTRSLSAPVSGTSFGKLLLEDRHILTGVHIQRKHEASDHVALSSKKQKKERFNFKEKVSNFRYNFTLRGKLFGRKTQSISGLHTANLYSSKDILSGPTVVMNSGERHERENFTEVPPSPASVCSSVQEEFWKLSDHHSPISTSDVTPREENCVSVFREISSNLKELRRQLNQLDSDDTEDKVEQEPVESEITKLEDPAEAYIRDLLIVSGMYDGSTDNNFSRNNPAMKPISSTIFEEVEEAYRKSETKNEIIGKEQNENSVEHKMLFDLLNEALPIVLAPCLTMSRFRRKVTNSSMPRQPLFGKKLLDSVWDVIRKFIHPPTDRSYYLLDGVMARDLNSTPWSSLMDDEFNTTGREVEDWLQVKFVHDPCSLPYFVISSVRKLKQSAAASSSVQLLQQKDVGLGETVPEETQTHQLSSTAIMMEWEKPEQQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQSSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFPSNGSLKTARSFSQMSFYEAGNEQLAGKIETPENYSLYQQAEGYSMTERP | 1215 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1808775 | 1821657 | + | CrPI670011_10g002910.1 | Cre10g0291 | 509593 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g0291 | 1215 | MobiDBLite | consensus disorder prediction | 1111 | 1126 | - | - | |
Cre10g0291 | 1215 | MobiDBLite | consensus disorder prediction | 112 | 126 | - | - | |
Cre10g0291 | 1215 | MobiDBLite | consensus disorder prediction | 154 | 186 | - | - | |
Cre10g0291 | 1215 | ProSiteProfiles | 'Homeobox' domain profile. | 1032 | 1097 | IPR001356 | GO:0003677(InterPro) | |
Cre10g0291 | 1215 | MobiDBLite | consensus disorder prediction | 686 | 705 | - | - | |
Cre10g0291 | 1215 | Coils | Coil | 671 | 691 | - | - | |
Cre10g0291 | 1215 | CDD | homeodomain | 1036 | 1098 | IPR001356 | GO:0003677(InterPro) | |
Cre10g0291 | 1215 | MobiDBLite | consensus disorder prediction | 1094 | 1137 | - | - | |
Cre10g0291 | 1215 | Gene3D | - | 1038 | 1102 | - | - | |
Cre10g0291 | 1215 | PANTHER | RB1-INDUCIBLE COILED-COIL PROTEIN | 1 | 874 | - | - | |
Cre10g0291 | 1215 | MobiDBLite | consensus disorder prediction | 112 | 186 | - | - | |
Cre10g0291 | 1215 | SMART | HOX_1 | 1034 | 1101 | IPR001356 | GO:0003677(InterPro) | |
Cre10g0291 | 1215 | Pfam | Domain of unknown function (DUF4378) | 715 | 876 | IPR025486 | - | |
Cre10g0291 | 1215 | MobiDBLite | consensus disorder prediction | 127 | 153 | - | - | |
Cre10g0291 | 1215 | Pfam | Homeodomain | 1036 | 1096 | IPR001356 | GO:0003677(InterPro) | |
Cre10g0291 | 1215 | SUPERFAMILY | Homeodomain-like | 1032 | 1099 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre10g0291 | Cre-Chr10:1808775 | Cre11g2274 | Cre-Chr11:34473936 | 4.20E-74 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54464 | PF14309 | DUF4378 | 4.10E-23 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g0291 | - | - | - | 0.0 |