Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0291 ATGGGAGGCTTATTATATCCTCTTGACTTTGATCACAGAAGCATGGCGAAGAAGATATTTAATCAAAAGAGACGCAATGGTGGGCTGGAAACCCCTCGAAATAGCCTGGAGCTACAGATGGAGAGTTCCCAAAACTATTGTGCTGCAGAAGAAATACCGTACTCCTACCAAATCGATGAAGTGTTTTCTGACAAGGACTATTTAAAAAATGAGGCTTCAATGAAGAAATTAATTGATAAGGAAATATCTACACGCACAAATGTCAAACATAATGGACCAAGCATTGTTGCTCGACTCATGGGGATGGATATGTTGCCCTTGGATGCTAGAAATGGAGTTGAGGTAAGTGACAAGAGGCATAATAGTAAGGGAGTTAAGACTTCGAATAAAGAAACTAATGGCAGGGCCTTGCATTCTCATGCATCCTCCAAATCAAATTCTTCTAAGCAAATGGACCTGCACTCATCTTATCATGATAATGACAAGGATTCTGATCGTTGGAGCAGCAGTCAGAAGATGGGAAAATCACATCGTCGGGAACATCCTCAGGAGGAGGAATTACAAAAGTTCAAAAAGGAATTTGAAGCATGGCAAGCTGCAAGGTTTAGGGAGTGTTCAAGGGTTATTGAAGTTAGTAGCATCAACAGACGGTCACTTGCTCAGGAAGACCTTGCCAAGGAGAAGATGGCACTAAATGCAAACACCAGGAGAGTATCAAGCCAGAAGGTCTCAGCGGAACCCAAAGGTTCAACAGTGGAGATGAAATCATATAGATATATAGGTCTGGATGATAGCATTAAGAGGGAAACATTCCCAGCTGAGCAGAGGGGATCCTTTTCTTTGAGAAGCAAATCCATGGATGCAGATTTTGAACACCCTTGCCTGATAAGTTGTGATCAGAAAGACAAATCGCGTGGCCCAACAAAGATTGTGATTCTCAAGCCTAGTCCTGATAAGATGTGCCTCCATGAAGAGCACTGGAAAAATTCCCCAGGGACCTTAGGAGAAAGAGTAAGTATTGAAGATTTTCTTGATGAGGTCAAGGAGCGGCTGAGATGTGAATTGCAAGGGAAAACTTTGACAAAGGGTTATGTAGCTCGTGGAAGTGGAATAGAGACACCATATAGTGAGAAACCTTCTCACAGAAGACAAATAGCTCGGAACATTGCAACACAGGCTAGAGATAGTGTCACAAGAGACATTGGAATGAATTTACTTCGTTCAGAATCCACGAGATCATACAATAGCGAAGTTCAATTTAATGGGTTAGATTCCCCAGAATTCATAAACAAAGATACCAGAAGATTGTTGTCAGAGAGACTAAGAAATGTTCGAAGGAAAGATTCAGACCTTGATATTGGCAGCTCTAGGTCATCTGTATGTGATCACGAAAGAGTTATGAACCAAGTAGAAACTACTTTGACAAATGGAAAACATACAAATTACTGGGAAGTACTCAGAGATGCAGAAGAAATACAAACTAGATCTTTCAGGCATGAGGCAGACCAAAATGAGGTTCTTCCCAAAGAATTGTCTCCTAGGAATCTTACCAGGTCATTATCAGCTCCAGTGTCAGGAACGTCATTTGGGAAGCTTCTTCTGGAGGACCGCCATATTTTAACTGGTGTCCACATTCAGAGAAAACATGAAGCAAGTGATCATGTGGCGTTGAGTAGCAAAAAGCAGAAGAAAGAGAGGTTTAATTTTAAAGAAAAGGTTTCCAATTTCAGATATAATTTCACTCTTAGAGGAAAGCTGTTTGGTAGAAAGACCCAATCAATTAGCGGATTACATACTGCCAACCTATACTCTTCCAAAGACATCTTGAGTGGACCAACCGTTGTAATGAACTCTGGAGAGCGCCATGAAAGGGAGAATTTCACTGAGGTGCCTCCGAGTCCTGCCTCAGTGTGCAGCAGTGTACAAGAAGAGTTCTGGAAGTTATCTGATCATCACAGTCCTATATCAACTTCAGATGTGACTCCTAGAGAAGAGAACTGTGTTTCCGTCTTTAGGGAGATAAGCTCCAACTTGAAAGAACTTCGGAGACAGCTGAATCAACTTGATTCGGATGATACTGAGGACAAAGTGGAACAGGAACCCGTTGAGTCTGAAATCACAAAACTTGAAGATCCAGCAGAAGCTTACATACGAGACCTTCTAATTGTTTCTGGTATGTATGATGGATCAACAGATAACAACTTTTCACGAAATAACCCAGCTATGAAGCCTATCAGCAGCACGATTTTTGAGGAAGTGGAAGAAGCTTATAGAAAATCAGAGACCAAAAATGAAATCATCGGGAAGGAGCAGAATGAAAATAGTGTAGAACACAAAATGCTATTTGATCTTTTGAATGAAGCACTTCCGATCGTACTTGCACCATGTTTAACAATGTCCAGATTTAGAAGAAAAGTTACTAACTCCTCTATGCCACGGCAGCCTTTGTTCGGAAAAAAACTATTGGATTCTGTATGGGACGTCATCCGCAAGTTTATACACCCTCCAACTGATAGATCTTATTACTTGCTTGATGGGGTTATGGCTCGAGATTTAAATTCAACACCATGGTCCTCATTAATGGATGATGAGTTTAACACAACTGGAAGAGAGGTTGAAGATTGGCTTCAAGTGAAGTTTGTGCACGACCCTTGCTCTTTGCCATATTTTGTAATATCCAGCGTCAGAAAACTTAAACAATCAGCTGCCGCAAGTTCCAGTGTTCAGTTGCTGCAACAAAAGGACGTGGGACTGGGTGAGACAGTGCCAGAGGAAACTCAGACACATCAGCTCTCCTCCACCGCGATTATGATGGAGTGGGAAAAGCCTGAGCAGCAAAATCCTTACCACCATCAGAACCCTCCTCTTCGAGACGATCATCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACTCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCGACACCTGTGCAACTTCAGATCTTAGAGCGTATATTTGAGCAAGGGAATGGAACTCCCAGCAAACAAAAGATCAAAGAGATAACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGTACAGCCCCTGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAGTCACCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAATCCTCTGCACCTTTGGGGGATGACATGTGCTTCCAAAGTCCCGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACGGCGAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGGGAATGAGCAGCTGGCAGGAAAGATTGAAACGCCAGAGAACTATAGTCTTTACCAGCAAGCAGAAGGCTACAGCATGACCGAACGACCATGA 3648 42.85 MGGLLYPLDFDHRSMAKKIFNQKRRNGGLETPRNSLELQMESSQNYCAAEEIPYSYQIDEVFSDKDYLKNEASMKKLIDKEISTRTNVKHNGPSIVARLMGMDMLPLDARNGVEVSDKRHNSKGVKTSNKETNGRALHSHASSKSNSSKQMDLHSSYHDNDKDSDRWSSSQKMGKSHRREHPQEEELQKFKKEFEAWQAARFRECSRVIEVSSINRRSLAQEDLAKEKMALNANTRRVSSQKVSAEPKGSTVEMKSYRYIGLDDSIKRETFPAEQRGSFSLRSKSMDADFEHPCLISCDQKDKSRGPTKIVILKPSPDKMCLHEEHWKNSPGTLGERVSIEDFLDEVKERLRCELQGKTLTKGYVARGSGIETPYSEKPSHRRQIARNIATQARDSVTRDIGMNLLRSESTRSYNSEVQFNGLDSPEFINKDTRRLLSERLRNVRRKDSDLDIGSSRSSVCDHERVMNQVETTLTNGKHTNYWEVLRDAEEIQTRSFRHEADQNEVLPKELSPRNLTRSLSAPVSGTSFGKLLLEDRHILTGVHIQRKHEASDHVALSSKKQKKERFNFKEKVSNFRYNFTLRGKLFGRKTQSISGLHTANLYSSKDILSGPTVVMNSGERHERENFTEVPPSPASVCSSVQEEFWKLSDHHSPISTSDVTPREENCVSVFREISSNLKELRRQLNQLDSDDTEDKVEQEPVESEITKLEDPAEAYIRDLLIVSGMYDGSTDNNFSRNNPAMKPISSTIFEEVEEAYRKSETKNEIIGKEQNENSVEHKMLFDLLNEALPIVLAPCLTMSRFRRKVTNSSMPRQPLFGKKLLDSVWDVIRKFIHPPTDRSYYLLDGVMARDLNSTPWSSLMDDEFNTTGREVEDWLQVKFVHDPCSLPYFVISSVRKLKQSAAASSSVQLLQQKDVGLGETVPEETQTHQLSSTAIMMEWEKPEQQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQSSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFPSNGSLKTARSFSQMSFYEAGNEQLAGKIETPENYSLYQQAEGYSMTERP 1215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1808775 1821657 + CrPI670011_10g002910.1 Cre10g0291 509593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0291 1215 MobiDBLite consensus disorder prediction 1111 1126 - -
Cre10g0291 1215 MobiDBLite consensus disorder prediction 112 126 - -
Cre10g0291 1215 MobiDBLite consensus disorder prediction 154 186 - -
Cre10g0291 1215 ProSiteProfiles 'Homeobox' domain profile. 1032 1097 IPR001356 GO:0003677(InterPro)
Cre10g0291 1215 MobiDBLite consensus disorder prediction 686 705 - -
Cre10g0291 1215 Coils Coil 671 691 - -
Cre10g0291 1215 CDD homeodomain 1036 1098 IPR001356 GO:0003677(InterPro)
Cre10g0291 1215 MobiDBLite consensus disorder prediction 1094 1137 - -
Cre10g0291 1215 Gene3D - 1038 1102 - -
Cre10g0291 1215 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 874 - -
Cre10g0291 1215 MobiDBLite consensus disorder prediction 112 186 - -
Cre10g0291 1215 SMART HOX_1 1034 1101 IPR001356 GO:0003677(InterPro)
Cre10g0291 1215 Pfam Domain of unknown function (DUF4378) 715 876 IPR025486 -
Cre10g0291 1215 MobiDBLite consensus disorder prediction 127 153 - -
Cre10g0291 1215 Pfam Homeodomain 1036 1096 IPR001356 GO:0003677(InterPro)
Cre10g0291 1215 SUPERFAMILY Homeodomain-like 1032 1099 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0291 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0291 Cre-Chr10:1808775 Cre11g2274 Cre-Chr11:34473936 4.20E-74 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre01g1402 . 1 195 Wox Gene Family AT3G18010 57.2 3.3e-48 189.5
Cre10g0291 . 937 1212 Wox Gene Family AT4G35550 51.5 4.3e-72 268.5
Cre11g2274 . 1 222 Wox Gene Family AT4G35550 53.3 3.0e-57 219.2
Cre08g1554 . 5 162 Wox Gene Family AT1G46480 65.1 2.7e-52 202.2
Cre01g1402 . 1 195 Wox Gene Family AT3G18010 57.2 3.3e-48 189.5
Cre08g1554 . 5 162 Wox Gene Family AT1G46480 65.1 2.7e-52 202.2
Cre10g0291 . 937 1212 Wox Gene Family AT4G35550 51.5 4.3e-72 268.5
Cre11g2274 . 1 222 Wox Gene Family AT4G35550 53.3 3.0e-57 219.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008231 2 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54464 PF14309 DUF4378 4.10E-23 No_clan Cre TF