Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0291 ATGGGAGGCTTATTATATCCTCTTGACTTTGATCACAGAAGCATGGCGAAGAAGATATTTAATCAAAAGAGACGCAATGGTGGGCTGGAAACCCCTCGAAATAGCCTGGAGCTACAGATGGAGAGTTCCCAAAACTATTGTGCTGCAGAAGAAATACCGTACTCCTACCAAATCGATGAAGTGTTTTCTGACAAGGACTATTTAAAAAATGAGGCTTCAATGAAGAAATTAATTGATAAGGAAATATCTACACGCACAAATGTCAAACATAATGGACCAAGCATTGTTGCTCGACTCATGGGGATGGATATGTTGCCCTTGGATGCTAGAAATGGAGTTGAGGTAAGTGACAAGAGGCATAATAGTAAGGGAGTTAAGACTTCGAATAAAGAAACTAATGGCAGGGCCTTGCATTCTCATGCATCCTCCAAATCAAATTCTTCTAAGCAAATGGACCTGCACTCATCTTATCATGATAATGACAAGGATTCTGATCGTTGGAGCAGCAGTCAGAAGATGGGAAAATCACATCGTCGGGAACATCCTCAGGAGGAGGAATTACAAAAGTTCAAAAAGGAATTTGAAGCATGGCAAGCTGCAAGGTTTAGGGAGTGTTCAAGGGTTATTGAAGTTAGTAGCATCAACAGACGGTCACTTGCTCAGGAAGACCTTGCCAAGGAGAAGATGGCACTAAATGCAAACACCAGGAGAGTATCAAGCCAGAAGGTCTCAGCGGAACCCAAAGGTTCAACAGTGGAGATGAAATCATATAGATATATAGGTCTGGATGATAGCATTAAGAGGGAAACATTCCCAGCTGAGCAGAGGGGATCCTTTTCTTTGAGAAGCAAATCCATGGATGCAGATTTTGAACACCCTTGCCTGATAAGTTGTGATCAGAAAGACAAATCGCGTGGCCCAACAAAGATTGTGATTCTCAAGCCTAGTCCTGATAAGATGTGCCTCCATGAAGAGCACTGGAAAAATTCCCCAGGGACCTTAGGAGAAAGAGTAAGTATTGAAGATTTTCTTGATGAGGTCAAGGAGCGGCTGAGATGTGAATTGCAAGGGAAAACTTTGACAAAGGGTTATGTAGCTCGTGGAAGTGGAATAGAGACACCATATAGTGAGAAACCTTCTCACAGAAGACAAATAGCTCGGAACATTGCAACACAGGCTAGAGATAGTGTCACAAGAGACATTGGAATGAATTTACTTCGTTCAGAATCCACGAGATCATACAATAGCGAAGTTCAATTTAATGGGTTAGATTCCCCAGAATTCATAAACAAAGATACCAGAAGATTGTTGTCAGAGAGACTAAGAAATGTTCGAAGGAAAGATTCAGACCTTGATATTGGCAGCTCTAGGTCATCTGTATGTGATCACGAAAGAGTTATGAACCAAGTAGAAACTACTTTGACAAATGGAAAACATACAAATTACTGGGAAGTACTCAGAGATGCAGAAGAAATACAAACTAGATCTTTCAGGCATGAGGCAGACCAAAATGAGGTTCTTCCCAAAGAATTGTCTCCTAGGAATCTTACCAGGTCATTATCAGCTCCAGTGTCAGGAACGTCATTTGGGAAGCTTCTTCTGGAGGACCGCCATATTTTAACTGGTGTCCACATTCAGAGAAAACATGAAGCAAGTGATCATGTGGCGTTGAGTAGCAAAAAGCAGAAGAAAGAGAGGTTTAATTTTAAAGAAAAGGTTTCCAATTTCAGATATAATTTCACTCTTAGAGGAAAGCTGTTTGGTAGAAAGACCCAATCAATTAGCGGATTACATACTGCCAACCTATACTCTTCCAAAGACATCTTGAGTGGACCAACCGTTGTAATGAACTCTGGAGAGCGCCATGAAAGGGAGAATTTCACTGAGGTGCCTCCGAGTCCTGCCTCAGTGTGCAGCAGTGTACAAGAAGAGTTCTGGAAGTTATCTGATCATCACAGTCCTATATCAACTTCAGATGTGACTCCTAGAGAAGAGAACTGTGTTTCCGTCTTTAGGGAGATAAGCTCCAACTTGAAAGAACTTCGGAGACAGCTGAATCAACTTGATTCGGATGATACTGAGGACAAAGTGGAACAGGAACCCGTTGAGTCTGAAATCACAAAACTTGAAGATCCAGCAGAAGCTTACATACGAGACCTTCTAATTGTTTCTGGTATGTATGATGGATCAACAGATAACAACTTTTCACGAAATAACCCAGCTATGAAGCCTATCAGCAGCACGATTTTTGAGGAAGTGGAAGAAGCTTATAGAAAATCAGAGACCAAAAATGAAATCATCGGGAAGGAGCAGAATGAAAATAGTGTAGAACACAAAATGCTATTTGATCTTTTGAATGAAGCACTTCCGATCGTACTTGCACCATGTTTAACAATGTCCAGATTTAGAAGAAAAGTTACTAACTCCTCTATGCCACGGCAGCCTTTGTTCGGAAAAAAACTATTGGATTCTGTATGGGACGTCATCCGCAAGTTTATACACCCTCCAACTGATAGATCTTATTACTTGCTTGATGGGGTTATGGCTCGAGATTTAAATTCAACACCATGGTCCTCATTAATGGATGATGAGTTTAACACAACTGGAAGAGAGGTTGAAGATTGGCTTCAAGTGAAGTTTGTGCACGACCCTTGCTCTTTGCCATATTTTGTAATATCCAGCGTCAGAAAACTTAAACAATCAGCTGCCGCAAGTTCCAGTGTTCAGTTGCTGCAACAAAAGGACGTGGGACTGGGTGAGACAGTGCCAGAGGAAACTCAGACACATCAGCTCTCCTCCACCGCGATTATGATGGAGTGGGAAAAGCCTGAGCAGCAAAATCCTTACCACCATCAGAACCCTCCTCTTCGAGACGATCATCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACTCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCGACACCTGTGCAACTTCAGATCTTAGAGCGTATATTTGAGCAAGGGAATGGAACTCCCAGCAAACAAAAGATCAAAGAGATAACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGTACAGCCCCTGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAGTCACCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAATCCTCTGCACCTTTGGGGGATGACATGTGCTTCCAAAGTCCCGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACGGCGAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGGGAATGAGCAGCTGGCAGGAAAGATTGAAACGCCAGAGAACTATAGTCTTTACCAGCAAGCAGAAGGCTACAGCATGACCGAACGACCATGA 3648 42.85 MGGLLYPLDFDHRSMAKKIFNQKRRNGGLETPRNSLELQMESSQNYCAAEEIPYSYQIDEVFSDKDYLKNEASMKKLIDKEISTRTNVKHNGPSIVARLMGMDMLPLDARNGVEVSDKRHNSKGVKTSNKETNGRALHSHASSKSNSSKQMDLHSSYHDNDKDSDRWSSSQKMGKSHRREHPQEEELQKFKKEFEAWQAARFRECSRVIEVSSINRRSLAQEDLAKEKMALNANTRRVSSQKVSAEPKGSTVEMKSYRYIGLDDSIKRETFPAEQRGSFSLRSKSMDADFEHPCLISCDQKDKSRGPTKIVILKPSPDKMCLHEEHWKNSPGTLGERVSIEDFLDEVKERLRCELQGKTLTKGYVARGSGIETPYSEKPSHRRQIARNIATQARDSVTRDIGMNLLRSESTRSYNSEVQFNGLDSPEFINKDTRRLLSERLRNVRRKDSDLDIGSSRSSVCDHERVMNQVETTLTNGKHTNYWEVLRDAEEIQTRSFRHEADQNEVLPKELSPRNLTRSLSAPVSGTSFGKLLLEDRHILTGVHIQRKHEASDHVALSSKKQKKERFNFKEKVSNFRYNFTLRGKLFGRKTQSISGLHTANLYSSKDILSGPTVVMNSGERHERENFTEVPPSPASVCSSVQEEFWKLSDHHSPISTSDVTPREENCVSVFREISSNLKELRRQLNQLDSDDTEDKVEQEPVESEITKLEDPAEAYIRDLLIVSGMYDGSTDNNFSRNNPAMKPISSTIFEEVEEAYRKSETKNEIIGKEQNENSVEHKMLFDLLNEALPIVLAPCLTMSRFRRKVTNSSMPRQPLFGKKLLDSVWDVIRKFIHPPTDRSYYLLDGVMARDLNSTPWSSLMDDEFNTTGREVEDWLQVKFVHDPCSLPYFVISSVRKLKQSAAASSSVQLLQQKDVGLGETVPEETQTHQLSSTAIMMEWEKPEQQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQSSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFPSNGSLKTARSFSQMSFYEAGNEQLAGKIETPENYSLYQQAEGYSMTERP 1215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1808775 1821657 + CrPI670011_10g002910.1 Cre10g0291 509593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0291 1215 MobiDBLite consensus disorder prediction 1111 1126 - -
Cre10g0291 1215 MobiDBLite consensus disorder prediction 112 126 - -
Cre10g0291 1215 MobiDBLite consensus disorder prediction 154 186 - -
Cre10g0291 1215 ProSiteProfiles 'Homeobox' domain profile. 1032 1097 IPR001356 GO:0003677(InterPro)
Cre10g0291 1215 MobiDBLite consensus disorder prediction 686 705 - -
Cre10g0291 1215 Coils Coil 671 691 - -
Cre10g0291 1215 CDD homeodomain 1036 1098 IPR001356 GO:0003677(InterPro)
Cre10g0291 1215 MobiDBLite consensus disorder prediction 1094 1137 - -
Cre10g0291 1215 Gene3D - 1038 1102 - -
Cre10g0291 1215 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 874 - -
Cre10g0291 1215 MobiDBLite consensus disorder prediction 112 186 - -
Cre10g0291 1215 SMART HOX_1 1034 1101 IPR001356 GO:0003677(InterPro)
Cre10g0291 1215 Pfam Domain of unknown function (DUF4378) 715 876 IPR025486 -
Cre10g0291 1215 MobiDBLite consensus disorder prediction 127 153 - -
Cre10g0291 1215 Pfam Homeodomain 1036 1096 IPR001356 GO:0003677(InterPro)
Cre10g0291 1215 SUPERFAMILY Homeodomain-like 1032 1099 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0291 Cre-Chr10:1808775 Cre11g2274 Cre-Chr11:34473936 4.20E-74 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54464 PF14309 DUF4378 4.10E-23 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0291 - - - 0.0