Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0309 ATGGATTTCATAGCCAACCCATTTCGCTTTTCTTCATCTTCATCGCCTTCCTTTGGGAATCTCTTTGAGAGAGTTAGAGAAATTTGCTGCTATGCGGTTTCTGCGATTCTTGGCAACATCTTGTCTGCGATCTTCACTTTCTTCTTCGCTCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGAGCTGTTTTCTCTATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGATGAATCAGGGATAGGCTGTCTCCTTTACCTGATTGATGTCATTGCTAGCCTCCTCAGTGGACGTCTAGTTCGAGAACGCATCGGTCCGGCGATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTTCAGAGACAAGCTTTGATGACATTCCGAACATCTTTGACACCAGCAGTGCGAAAGGATTGCCTGGGGACTCGGTCGAGAAAATTCCCAAGATCGTAGTATCTAAGAACAATAGTGTAGATGCTTATGGTGAGAGAGTCTGTTGTTCTGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGCTCTTGCCCTCTATGCAGAAGGGATCTGTAA 708 45.34 MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGASETSFDDIPNIFDTSSAKGLPGDSVEKIPKIVVSKNNSVDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1959232 1960555 + CrPI670011_10g003090.1 Cre10g0309 509611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0309 235 SUPERFAMILY RING/U-box 176 235 - -
Cre10g0309 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Cre10g0309 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Cre10g0309 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
Cre10g0309 235 Pfam YMGG-like Gly-zipper 50 85 IPR027367 -
Cre10g0309 235 CDD RING-H2_NIPL1-like 189 232 - -
Cre10g0309 235 SMART ring_2 190 231 IPR001841 -
Cre10g0309 235 Pfam Ring finger domain 190 232 IPR001841 -
Cre10g0309 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 235 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0309 Cre-Chr10:1959232 Cre11g1690 Cre-Chr11:28307559 3.30E-12 dispersed
Cre10g0309 Cre-Chr10:1959232 Cre05g0389 Cre-Chr5:3546671 1.10E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0309 - - - 0.0