Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0310 ATGCTATCAAGCTTGATGAACTTCCTGAGGGCTTGCTGGCAGCCATGTGCCGATCATCTCTTGCGTCGTCGGGGCGGTGGTTCCGATTCGGTTGGCTGCCAAGATGGGCTACTTTGGTACAAGGACCATGGCCAGCACATCAATGGAGAATTTTCAATGGCTGTTGTTCAAGCCAACAATTTACTTGAGGATCAGAGTCAGCTTGAGTCTGGTCCCTTGAGCTTGCTAGAGTCTGGACCCTATGGAACCTTTATAGGAATATACGATGGCCATGGCGGCCCTGAGACATCGCGATTCATATGTGATAACTTGTTCCAGCATCTCAAAGTGTTCGCCACAGAAGAAAAGGAAATGTCAGTTAATGTGATAAAAAAAGCATTCCAAGCAACAGAAGAGGGGTTTCTCTCTATTGTCACCAAGCAATGGCCTATGAACCCCCAGATTGCGGCTGTTGGTTCTTGCTGTCTGGTTGCTGTGATTTGTAATGGAAAACTCTACATTGCCAATCTTGGTGATTCCCGAGCTGTGTTGGGAAGGTTAGTTCGGTCCACGGGGGAAGTTCTTCCCATTCAGCTGTCATCGGAGCATAATGTAAGCATACAGTCAGTCCGCCAGGAGATGCAGTCTTTGCACCCAGATGACTCCCACATAGTAGTGCTGAAGCATAATGTATGGCGCGTAAAGGGCTTGATTCAGATTTCTCGGTCAATCGGAGACGTATATCTCAAAAAGCCAGAATTTAACCGGGAGCCTTTGTATGCTAAGTTTCGCCTCCGAGAACCCTTCAGTAGGCCTATTTTGAGCTCAGAACCAGCAGTCTCTGTGCACGAACTAGATCCAAATGATCAATTTCTCATATTTGCCTCTGATGGGCTGTGGGAGCACCTTAGCAACCAGGATGCAGTTGATATAGTTCATAAGCATCCTCACAGTGGAAGTGCAAGGAGGCTGGTGAAAGCTGCAATGCAGGAAGCAGCTAAGAAACGAGAAATGCGATACTCGGATTTGAAGAAGATTGACCGTGGAGTTCGGCGCCATTTTCACGACGACACAACGGTGATAGTCGTGTTTCTTGGATCGAGCAGAGGGAGCAGCCCTGGTACAGCAGGGGAAGGGAGCCCTGTTTTGTCTGTGAGAGGGGGAGGAATGAACGTATCTGCAAAATCTCTAGCACCTTGA 1179 48.26 MLSSLMNFLRACWQPCADHLLRRRGGGSDSVGCQDGLLWYKDHGQHINGEFSMAVVQANNLLEDQSQLESGPLSLLESGPYGTFIGIYDGHGGPETSRFICDNLFQHLKVFATEEKEMSVNVIKKAFQATEEGFLSIVTKQWPMNPQIAAVGSCCLVAVICNGKLYIANLGDSRAVLGRLVRSTGEVLPIQLSSEHNVSIQSVRQEMQSLHPDDSHIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYAKFRLREPFSRPILSSEPAVSVHELDPNDQFLIFASDGLWEHLSNQDAVDIVHKHPHSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVIVVFLGSSRGSSPGTAGEGSPVLSVRGGGMNVSAKSLAP 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1963380 1966013 - CrPI670011_10g003100.1 Cre10g0310 509612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0310 392 ProSitePatterns PPM-type phosphatase domain signature. 84 92 IPR000222 GO:0043169(InterPro)
Cre10g0310 392 PANTHER PROTEIN PHOSPHATASE 43 357 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cre10g0310 392 FunFam Phosphatase 2C family protein 39 366 - -
Cre10g0310 392 MobiDBLite consensus disorder prediction 362 392 - -
Cre10g0310 392 CDD PP2Cc 82 358 IPR001932 -
Cre10g0310 392 Gene3D - 40 363 IPR036457 -
Cre10g0310 392 SMART PP2C_4 44 356 IPR001932 -
Cre10g0310 392 SUPERFAMILY PP2C-like 62 359 IPR036457 -
Cre10g0310 392 ProSiteProfiles PPM-type phosphatase domain profile. 50 358 IPR001932 -
Cre10g0310 392 Pfam Protein phosphatase 2C 83 327 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1210 Cre-Chr6:5983263 Cre10g0310 Cre-Chr10:1963380 8.00E-117 dispersed
Cre10g0310 Cre-Chr10:1963380 Cre10g2183 Cre-Chr10:36367698 2.50E-137 dispersed
Cre10g0310 Cre-Chr10:1963380 Cre04g1677 Cre-Chr4:35085522 1.30E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0310 K01102 - csv:101220137 737.643