Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0323 ATGGCAGAAGAGGATACCCCATCTGAAAGTTCTGAACCTTCTTCTTCTTCTTCAGCTCTCACCTCTTCAATGTCCACTCCCTTGAGGAAGGTGTTTTGTAGAATTTCAGGCCTTGCAACTTCTTTGAGAAGAAACACAGCGCCTCGTAGCAGAAGAATCTTTCATAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGTCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACGATACTCACATGGCATTTCACGAAGAGCTACACAGCACAGTCTCTAGACAGCTTAGCGTATGGTCTTCGTCATGAACTGCTGCAGCGCCCGATTTTACGGATGTGGAGTGTCTTGAATTCCACAGCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCCGTGAATCAAGCAGAGCAAGTTGAGTTGTATGAAGCAATGAGGGACGTTACTTGGGCAATGTTTGCAAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGGTTTGTCCAGGCATTTCATCGAGATCATAGAAGCAACAATACATTTTATATTTACTCAGATCTTGCAAACTATTCCATCAGTGCCACTCAATCATATAATATCAATCGGCTTTCTTCGGGTGAAGGGTGGTCGGAGCCACCCATACATGGCAATGTTTCTGCAAAATGGTTCCGGGAACCGCTTGATCCTATTAGCGGTGAGAAGATCGGGAAAGCAAGGCAAATCCCACCTGAGGACTTGATTAATATTGCTGGCATTTCACAGGTAGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCATTACTTTCAGCAGCTCTACCTGTTTCCGATGCTTCAAATGAAAGCATCGTTGCAGTGGTGGGTGTTACGACCGCCCTTTATAGCGTAGGTCAACTTATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCGGCCAATGCTCCCCTGTTAAGAAATACATCAAGCGGTCCAAAGCTTATGATGGCTGCCGATTCCCAGGATGATGTGATTCGATTAGGAGCTGAGTGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGTCATGAGGTCCATGAGGAGAATGTCAAGCTTGGTGATAAGCAATATTACATCGACTCATTTTTCCTTAATCTAAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTACAAAACATTGGTTATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGAAGAGCGGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTGAGGACACCAATGGCTGCAGTAATTGGACTGCTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTTCGACAGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTCCGACTTCTTAACAACATACTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTGGGACGAGAACTCGAAGGGCTTGTTGATATGTTCTCTGTGCAGTGCATTAACCATAATGTGGAAACTGTATTGGATCTCTCTGACAACATGCCAAAATTAGTTCGAGGAGACTCTGGTCGAGTTGTTCAAATATTCACAAACTTGATTAGCAATTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGTGAGACGTCAAATACTCTTAAAGAAACGGGAAAGTTCTGTATGGATCAGAAGAAATCACGGTTTCCTAATCGGACAAAGATGAAACAACAGGGAGACCACACAAAGAATGCCTTCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGCTGTGGGATTGATCCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCAACAACCCGAACGCATGGTGGCACGGGTCTTGGACTATGCATTGTACGTACCTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAAAACGGCCCGGGAACTCTAATGCGACTTTATTTGGTTCTCAGCACACCTGCAGACTCCACAGATCATCACTGTCAGTTTGATTTTGCAAAACATAATGCGGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACGTCACAGTGGCTTCGTAAAATCGGACTGTTCACTTTAGAGGCTTCAGAGTGGAATGAACTAACACTAATCCTTCAGGAACTCTTTCAAGCCAAAAGTTCTGAAAATAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAAACATTACGAGCTGAGTTAATGAGAATTAAAGATATGAAAAGCCAAATATTCATCATTGTTGCCGATATCGGGATACTGGACTTGAGCACGGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGAAAAGCAAAATTTGCTTGGATGTTAAACCATGATACATCCAACGCCATAAAGATGGAGCTCCGGGGAAAAGGGCACATTATAATGAACAATAAGCCACTGTACAGATCAAAGATGATTCATATTTTGGAAGCTGTTATGAAGGACAGAAATCTTGAGTTGCAAAGGAAAAATGCTTTAAGAACTGCATCAAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCTGATGATTCTGATGTATCTGAACTTGGAAATCCTAACTCTCAGTGTGCGACATTTAAAGTCAGAGACAGCCAAGAAGAAACGACACTGAAACCATGTCAGTCACCATTTCTGCCCATTAACAATAGTTTAGTCGAGTTAACTCATGTACATTCGATTGAGAGTAATGTGAGGACGGGCGATCAGTGTGACACGAGACAAAATTCATCAATGCCTCAATGTCAAAGTTCTGAGTCCAATGGACAGAACTTAGGATGCAACTATCCTAAAAGCCAAGGAGAATCACATTCTAAGAACGTTCAAGGTAAGAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCAGTTCTCCAAAGAGTAACGACCATAATGCTCGAAAGGATGGGAGCCACGGTCATTGCTTTCGGAGACGGATTGCAGGCTGTTGAAGCTCTGACTGCCATGGTCAGTGCTGAAGAGCAAAGAAGGGAATTCCCCACAAGATATGACTTGATTTTAATGGATTGCCAAATGCCAAAGATGGATGGCTATGAAGCAACAAAAGCAATTAGAAAGCTAGAAGCAGGAACGAGCCTTCACGTTCCAATTGTAGCATTGACAGCCCACGCAATGTCATCAGATGAAGCCAAATGCTTGGAGGTAGGAATGGATGCCTACCTAACAAAGCCAATTGACTATAAGCTGATGTTTCTAACTAAACAACAGGAGAAGAGAAGGCCTTTAAGGGTCCGAACCGGTGTGTGTATTCAAGAGATGGGTTTAGTACTGAAGAGTGTGCCAATTTGGATAAGGAATTTGCACAAAATGATGCAAATTCTATGTTTGATGGCAGCACCAGATAGAGATGGTTAG 3798 42.26 MAEEDTPSESSEPSSSSSALTSSMSTPLRKVFCRISGLATSLRRNTAPRSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPVNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATQSYNINRLSSGEGWSEPPIHGNVSAKWFREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSSGPKLMMAADSQDDVIRLGAEWLQKTYGNNFPPGHEVHEENVKLGDKQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDNMPKLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKETGKFCMDQKKSRFPNRTKMKQQGDHTKNAFKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPADSTDHHCQFDFAKHNAVVLLALRGSMSRLITSQWLRKIGLFTLEASEWNELTLILQELFQAKSSENKKGFSPQDSLGETLRAELMRIKDMKSQIFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYRSKMIHILEAVMKDRNLELQRKNALRTASKEGDYHECLEIDSTQFETASSDDSDVSELGNPNSQCATFKVRDSQEETTLKPCQSPFLPINNSLVELTHVHSIESNVRTGDQCDTRQNSSMPQCQSSESNGQNLGCNYPKSQGESHSKNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGATVIAFGDGLQAVEALTAMVSAEEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLEAGTSLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMFLTKQQEKRRPLRVRTGVCIQEMGLVLKSVPIWIRNLHKMMQILCLMAAPDRDG 1265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2081695 2087498 - CrPI670011_10g003230.1 Cre10g0323 509625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0323 1265 MobiDBLite consensus disorder prediction 1037 1078 - -
Cre10g0323 1265 MobiDBLite consensus disorder prediction 7 23 - -
Cre10g0323 1265 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 494 573 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre10g0323 1265 PRINTS Bacterial sensor protein C-terminal signature 731 749 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre10g0323 1265 PRINTS Bacterial sensor protein C-terminal signature 696 710 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre10g0323 1265 PRINTS Bacterial sensor protein C-terminal signature 714 724 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre10g0323 1265 Gene3D - 574 773 IPR036890 -
Cre10g0323 1265 Pfam Response regulator receiver domain 1090 1209 IPR001789 GO:0000160(InterPro)
Cre10g0323 1265 CDD REC_hyHK_CKI1_RcsC-like 1090 1212 - -
Cre10g0323 1265 Pfam His Kinase A (phospho-acceptor) domain 507 572 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre10g0323 1265 PANTHER TWO-COMPONENT HISTIDINE KINASE 52 777 IPR050736 -
Cre10g0323 1265 Gene3D - 1066 1222 - -
Cre10g0323 1265 ProSiteProfiles Response regulatory domain profile. 1089 1219 IPR001789 GO:0000160(InterPro)
Cre10g0323 1265 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 768 IPR003594 -
Cre10g0323 1265 SMART HisKA_10 506 572 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre10g0323 1265 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 561 768 IPR036890 -
Cre10g0323 1265 SMART REC_2 1088 1214 IPR001789 GO:0000160(InterPro)
Cre10g0323 1265 SMART HKATPase_4 619 771 IPR003594 -
Cre10g0323 1265 MobiDBLite consensus disorder prediction 1037 1079 - -
Cre10g0323 1265 SUPERFAMILY CheY-like 1086 1220 IPR011006 -
Cre10g0323 1265 Gene3D - 494 573 - -
Cre10g0323 1265 MobiDBLite consensus disorder prediction 1 23 - -
Cre10g0323 1265 CDD HisKA 507 568 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre10g0323 1265 FunFam Histidine kinase 1-like protein 494 573 - -
Cre10g0323 1265 ProSiteProfiles Histidine kinase domain profile. 513 771 IPR005467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0323 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0608 Cre-Chr2:3057570 Cre10g0323 Cre-Chr10:2081695 3.10E-40 dispersed
Cre02g1812 Cre-Chr2:31444791 Cre10g0323 Cre-Chr10:2081695 4.50E-67 dispersed
Cre10g0323 Cre-Chr10:2081695 Cre11g0603 Cre-Chr11:3144989 7.40E-42 dispersed
Cre10g0323 Cre-Chr10:2081695 Cre02g1268 Cre-Chr2:13941677 2.90E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g0323 . 5 1214 Histidine Kinase Gene Family AT2G17820 64.0 0.0e+00 1443.7
Cre11g0603 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1343.6
Cre09g1861 . 24 971 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1299.6
Cre02g0608 . 290 1242 Histidine Kinase Gene Family AT2G01830 53.6 1.9e-277 952.6
Cre06g0986 . 138 1079 Histidine Kinase Gene Family AT2G01830 54.0 2.0e-274 942.6
Cre02g1268 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.8 3.8e-265 911.8
Cre05g1767 . 1 998 Histidine Kinase Gene Family AT5G10720 57.4 1.2e-291 999.6
Cre08g0848 . 108 1227 Histidine Kinase Gene Family AT1G09570 80.1 0.0e+00 1833.5
Cre08g0851 . 18 1141 Histidine Kinase Gene Family AT1G09570 71.3 0.0e+00 1610.5
Cre02g0625 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.7 0.0e+00 1203.7
Cre05g0804 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1194.5
Cre05g0804 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1671.4
Cre03g1005 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.4 0.0e+00 1236.5
Cre08g0848 . 128 1161 Histidine Kinase Gene Family AT2G18790 53.6 0.0e+00 1092.8
Cre02g0625 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.0 0.0e+00 1075.5
Cre08g0851 . 22 1075 Histidine Kinase Gene Family AT2G18790 50.8 3.9e-308 1054.7
Cre02g0625 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.5 0.0e+00 1363.2
Cre05g0804 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.8 0.0e+00 1150.2
Cre08g0848 . 116 1221 Histidine Kinase Gene Family AT5G35840 52.0 0.0e+00 1118.6
Cre05g0804 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1705.6
Cre03g1005 . 32 1113 Histidine Kinase Gene Family AT4G16250 58.6 0.0e+00 1274.6
Cre08g0848 . 115 1222 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1138.6
Cre02g0625 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.5 0.0e+00 1118.6
Cre03g1005 . 15 1113 Histidine Kinase Gene Family AT4G18130 62.7 0.0e+00 1361.7
Cre05g0804 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1273.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54466 PF02518 HATPase_c 7.10E-23 CL0025 Cre TR