Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0325 ATGGGAGAAGAGGGACGATCCTTGGCCGTTACCCCCACTTGGGCTTTCGCCACAGTGGTTACTCTCATGGTTTCTCTTGGATTCTTCTTCCAAGGCACGTTGAAACGGACCAAAAAGTGGTTGAATAGGACGAAGAGAAAATCGTTACTCGCTGCGTTGGATAAGATTAAAGAAGAGCTGATGCTCTTTGGACTTCTTTCGTTGTTGATGGGTCACTGGATTGTTTTTGTTGCAAGAATTTGTGTTAAGTCATCTGTCTTGAGCAGCCGTTTCTATCCTTGTGCGTTGGAGATTGATCTGAAACGAGTTAGACATATTTCTATTGCAAGTGAAAACTTGAACAGTTCTGTTCCAAGGGAGCATAATAACGATGGGATACGAGAGTACTGTCCTGAGGGTCGTGAATCATTTGCTTCATATGAAAGTTTAGAGCAGCTTCATCGATTAATTTTCGTTCTTGGTGTCACCCATGTTTCATATAGCTTCATTGCTATTGCCCTGGGTATGATTAAGATATATGGGTGGAGAGCGTGGGAAAATGAGGCTAAGGCTTTGGCCATTCAGAATGCTCAAGAATCTGTACAAGCATCATCAACTGGACCAAACATAAGGCGACTATCAACTTTTGTCTTTCACCATACTTCTCATCCATGGAGTCAGCATAGAGTCCTTGTTTGGCTGCTCTGTTTCAGCCGCCAGTTTTGGAGTTCTATCAATCGAGCTGATTACATGGCTTTGCGGTTGGGATTTATCAGTACTCATGAACTTCCTATATCATATGACTTCCATAATTATATGCTTCGAAGCATGGACGATGAATTTCGCGATATGGTTGGTATAAGCGTGCCACTCTGGATATATGCCATTGCTTGCATCTTCCTCAACTTTCATGGAAGCAACATTTACTTTTGGCTTTCCTTTCTCCCTGCAATTTTGATTCTGCTAATCGGGACAAAACTGCACCGGGTAGTTGTAAAGTTGGCTGTAGAAGTTGTGGATACATCTCGAAGGGGATATTACCGTTTTAACTTGAGGGATGAACTGTTTTGGTTTGGGAAGCCTAAGCTTCTTTTATGGTCGATACAATTTATATCCTTCCAGAATGCTTTTGAGATGGCTACATTTATTTGGTCCCTGTGGGAAATTAAGGAACCTTCTTGTTTCATGGACAACGTAACATACGTAGGTATCCGCTTGGCCTTTGGGGTTATCACTCAGTTTTGGTGTAGCTTCATTACATTCCCACTCTATGTTATAGTAACTCAGATGGGGTCGAAGGTCAAGAAATCACTAGTGTCGGAGAATGTCCGAAACTCGCTTCATCAATGGAAAAGAAGAGTGAAGGCAAGGCCGGTTGTTTCTTCCTCAGTTGCACTTGTGGGTGCAACATCACTTTCATCCTCTGTTTGTACAATGGATGATGATGGTCAGATAATCGACGACTTTACTGTGAACTGCTTGGAAGGAAGCACATCGAACACCGCCCAATACACACATTTCTCCCAGGTACTTCAGCAAGCTTCGTCGGACGACACGGACGTACAAATATCTGAGTTAGACCCTTGGATGATCCCTATTGTCCAATACCTGAAAGAGGGGAAACTCCCTGATGATAAGCAAGAGGCTGTCAAGGTTGTTAGGAAAGCCTCGACCTACGCTGTTAAAGATGACATCCTTTACAGAACATCTTTTAGCCATCCCTGGGCCAGATGTGTTTCGAAGGATGAAGGAGACTATGTTCTCCGTGAAATACATGAGGGCATCTGTGGTGCTCATGAAGGGGCTTTAGCAATATCCAGAAGGGCTGCCCTCTTAGGATATTATTGGCCAACGATGAACACAAATGCTAAGGAGTTTCAAATTTCCAGACCTTCCGGCTTCTGCTGCAAGAAACCTCTCCCTTCCTCTTCGATTCTCTCTTACTCCTTCGATTTCTTGGGTGTTTTCAATCTCTCAACAATGGTGCTCGAGGCTACAATGATCTGCATCGACAATTCCGAATGGATGAGGAACGGCGATTATGCTCCTTCCAGATTCCAAGCCCAAGCCGATGCCGTTAATCTCATTTGCGGAGCTAAAACCCAGTCTAACCCGGAGAATACAGTAGGAGTTCTTACAATGGCCGGAAAAGGGGTTCGGGTTTTGGTAACTCCTACAAGTGATCTTGGCAAGATTCTAGCGTGCATGCACGGAAAAAACAATAAATCTGATGGAGTTCTTCTTACAATTGTTCAAATGACTGTTGATATGATTTTCTCTTTAAATATTCTTCCCAAAGAAAAACATCTATCCCCAACATTCTTAGGAGTGAGTACTGTCCAATTTCAAGGTATTGAACAGCATTTTGGTTATCAGAAATTCTTTGGTCTTCACTCTTTTGATGCATCAGATTTGGTGTATAGTGGTTTAGAGATAGGTGGAGAGACAAACTTGGCTGCTGGGATTCAGGTGGCTCAGTTGGCTCTGAAGCATCGTCAAAACAAGAAGCAACAACAAAGAATTATTGTTTTTGCAGGAAGTCCTGCCAATCATGAAAAGAAGTTGTTGGAGATGATTGGAAAGAAATTAAAAAAGAACAATGTGGCACTAGATATTATTGATTTTGGTGAAGAAGATGATGGTAAGCCAGAGAAGCTGGAAGCCCTTCTTTCGGCTGTAAATAGTAACGACTCCAGTCACATTGTTCATGTTCCCTCAGGTCCAAATGCTCTTTCTGATGTACTTATTAGTACTCCAATCTTCACTGGTGATGGGGAGGGAGGAAGTGGATTTGCTGCAGCTGCTGCTGCAGCTTCAGCTGGTGGGGCCGGTTTTGATTTTGGTGTGGATCCCAACTTAGACCCTGAACTAGCACTTGCACTTCGAGTGTCAATGGAAGAGGAAAGGGCCAGACAGGAGGCAGCTGCTAAGAGAGCTGCTGAGGAGACTTCAAAGCAGGAAAAAGGAGGGGAACAGCCATCTGGCTCACAGGATACAACTATGAATGAACGTGCTAGTGCTGAATCTTCTGATGCTCAGAAGACAAGTGATCCAATGGAGGATGAAAATGCTCTGTTACAACAAGCCCTTGCAATGTCAATGGAAGATCCTGCCTCGAGTCAGGACCTGCGGGATACAGAAATGTCAGATGCAGCAATGGATCCAGAGTTGGCTCTTGCTCTTCAGTTGTCCGTGCAGGAGGATGCTAAAGACTCAACAAGCCAACCTGATATGAGTAAATTACTGGCAGACCAGTCATTTGTATCGTCCATTCTTGCATCGCTTCCAGGGGTTGATCCAAATGATCCATCAGTTAAAGATTTACTGGCTTCCATGCAAAGTCAGTCAAAGCCAGAGGACAAGAAGAATGAAGAAAAAGCCCCCAAGGAAGACGACGACAAATGA 3384 43.79 MGEEGRSLAVTPTWAFATVVTLMVSLGFFFQGTLKRTKKWLNRTKRKSLLAALDKIKEELMLFGLLSLLMGHWIVFVARICVKSSVLSSRFYPCALEIDLKRVRHISIASENLNSSVPREHNNDGIREYCPEGRESFASYESLEQLHRLIFVLGVTHVSYSFIAIALGMIKIYGWRAWENEAKALAIQNAQESVQASSTGPNIRRLSTFVFHHTSHPWSQHRVLVWLLCFSRQFWSSINRADYMALRLGFISTHELPISYDFHNYMLRSMDDEFRDMVGISVPLWIYAIACIFLNFHGSNIYFWLSFLPAILILLIGTKLHRVVVKLAVEVVDTSRRGYYRFNLRDELFWFGKPKLLLWSIQFISFQNAFEMATFIWSLWEIKEPSCFMDNVTYVGIRLAFGVITQFWCSFITFPLYVIVTQMGSKVKKSLVSENVRNSLHQWKRRVKARPVVSSSVALVGATSLSSSVCTMDDDGQIIDDFTVNCLEGSTSNTAQYTHFSQVLQQASSDDTDVQISELDPWMIPIVQYLKEGKLPDDKQEAVKVVRKASTYAVKDDILYRTSFSHPWARCVSKDEGDYVLREIHEGICGAHEGALAISRRAALLGYYWPTMNTNAKEFQISRPSGFCCKKPLPSSSILSYSFDFLGVFNLSTMVLEATMICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGKNNKSDGVLLTIVQMTVDMIFSLNILPKEKHLSPTFLGVSTVQFQGIEQHFGYQKFFGLHSFDASDLVYSGLEIGGETNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPANHEKKLLEMIGKKLKKNNVALDIIDFGEEDDGKPEKLEALLSAVNSNDSSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGFAAAAAAASAGGAGFDFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEETSKQEKGGEQPSGSQDTTMNERASAESSDAQKTSDPMEDENALLQQALAMSMEDPASSQDLRDTEMSDAAMDPELALALQLSVQEDAKDSTSQPDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQSKPEDKKNEEKAPKEDDDK 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2101581 2112501 - CrPI670011_10g003250.1 Cre10g0325 509627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0325 1127 MobiDBLite consensus disorder prediction 963 1013 - -
Cre10g0325 1127 MobiDBLite consensus disorder prediction 963 981 - -
Cre10g0325 1127 MobiDBLite consensus disorder prediction 1110 1127 - -
Cre10g0325 1127 Coils Coil 955 975 - -
Cre10g0325 1127 CDD VWA_26S_proteasome_subunit 654 912 - -
Cre10g0325 1127 SUPERFAMILY vWA-like 657 898 IPR036465 -
Cre10g0325 1127 Pfam von Willebrand factor type A domain 659 735 IPR002035 -
Cre10g0325 1127 CDD PSMD4_RAZUL 1067 1113 IPR049590 -
Cre10g0325 1127 MobiDBLite consensus disorder prediction 982 1006 - -
Cre10g0325 1127 PANTHER MLO-LIKE PROTEIN 1 2 456 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Cre10g0325 1127 Gene3D - 943 1028 - -
Cre10g0325 1127 ProSiteProfiles VWFA domain profile. 658 913 IPR002035 -
Cre10g0325 1127 FunFam 26S proteasome regulatory subunit N10 943 1028 - -
Cre10g0325 1127 Pfam Ubiquitin interaction motif 1047 1060 IPR003903 -
Cre10g0325 1127 Pfam Ubiquitin interaction motif 947 960 IPR003903 -
Cre10g0325 1127 Pfam Ubiquitin interaction motif 1014 1029 IPR003903 -
Cre10g0325 1127 Gene3D von Willebrand factor, type A domain 656 761 IPR036465 -
Cre10g0325 1127 Gene3D von Willebrand factor, type A domain 797 910 IPR036465 -
Cre10g0325 1127 Gene3D - 538 623 - -
Cre10g0325 1127 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 1014 1033 IPR003903 -
Cre10g0325 1127 MobiDBLite consensus disorder prediction 1086 1127 - -
Cre10g0325 1127 SMART uim 1045 1064 IPR003903 -
Cre10g0325 1127 SMART uim 1014 1033 IPR003903 -
Cre10g0325 1127 SMART uim 945 964 IPR003903 -
Cre10g0325 1127 Pfam Mlo family 5 457 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Cre10g0325 1127 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 945 964 IPR003903 -
Cre10g0325 1127 MobiDBLite consensus disorder prediction 1025 1048 - -
Cre10g0325 1127 SMART VWA_4 655 899 IPR002035 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0325 Cre-Chr10:2101581 Cre11g2216 Cre-Chr11:33868779 5.70E-102 dispersed
Cre01g0582 Cre-Chr1:5091700 Cre10g0325 Cre-Chr10:2101581 4.00E-38 transposed
Cre04g0674 Cre-Chr4:24717705 Cre10g0325 Cre-Chr10:2101581 1.00E-17 transposed
Cre05g1133 Cre-Chr5:10792689 Cre10g0325 Cre-Chr10:2101581 9.30E-138 transposed
Cre10g0325 Cre-Chr10:2101581 Cre04g1657 Cre-Chr4:34929619 6.60E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0325 K08472 - csv:101217051 949.118