Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0325 ATGGGAGAAGAGGGACGATCCTTGGCCGTTACCCCCACTTGGGCTTTCGCCACAGTGGTTACTCTCATGGTTTCTCTTGGATTCTTCTTCCAAGGCACGTTGAAACGGACCAAAAAGTGGTTGAATAGGACGAAGAGAAAATCGTTACTCGCTGCGTTGGATAAGATTAAAGAAGAGCTGATGCTCTTTGGACTTCTTTCGTTGTTGATGGGTCACTGGATTGTTTTTGTTGCAAGAATTTGTGTTAAGTCATCTGTCTTGAGCAGCCGTTTCTATCCTTGTGCGTTGGAGATTGATCTGAAACGAGTTAGACATATTTCTATTGCAAGTGAAAACTTGAACAGTTCTGTTCCAAGGGAGCATAATAACGATGGGATACGAGAGTACTGTCCTGAGGGTCGTGAATCATTTGCTTCATATGAAAGTTTAGAGCAGCTTCATCGATTAATTTTCGTTCTTGGTGTCACCCATGTTTCATATAGCTTCATTGCTATTGCCCTGGGTATGATTAAGATATATGGGTGGAGAGCGTGGGAAAATGAGGCTAAGGCTTTGGCCATTCAGAATGCTCAAGAATCTGTACAAGCATCATCAACTGGACCAAACATAAGGCGACTATCAACTTTTGTCTTTCACCATACTTCTCATCCATGGAGTCAGCATAGAGTCCTTGTTTGGCTGCTCTGTTTCAGCCGCCAGTTTTGGAGTTCTATCAATCGAGCTGATTACATGGCTTTGCGGTTGGGATTTATCAGTACTCATGAACTTCCTATATCATATGACTTCCATAATTATATGCTTCGAAGCATGGACGATGAATTTCGCGATATGGTTGGTATAAGCGTGCCACTCTGGATATATGCCATTGCTTGCATCTTCCTCAACTTTCATGGAAGCAACATTTACTTTTGGCTTTCCTTTCTCCCTGCAATTTTGATTCTGCTAATCGGGACAAAACTGCACCGGGTAGTTGTAAAGTTGGCTGTAGAAGTTGTGGATACATCTCGAAGGGGATATTACCGTTTTAACTTGAGGGATGAACTGTTTTGGTTTGGGAAGCCTAAGCTTCTTTTATGGTCGATACAATTTATATCCTTCCAGAATGCTTTTGAGATGGCTACATTTATTTGGTCCCTGTGGGAAATTAAGGAACCTTCTTGTTTCATGGACAACGTAACATACGTAGGTATCCGCTTGGCCTTTGGGGTTATCACTCAGTTTTGGTGTAGCTTCATTACATTCCCACTCTATGTTATAGTAACTCAGATGGGGTCGAAGGTCAAGAAATCACTAGTGTCGGAGAATGTCCGAAACTCGCTTCATCAATGGAAAAGAAGAGTGAAGGCAAGGCCGGTTGTTTCTTCCTCAGTTGCACTTGTGGGTGCAACATCACTTTCATCCTCTGTTTGTACAATGGATGATGATGGTCAGATAATCGACGACTTTACTGTGAACTGCTTGGAAGGAAGCACATCGAACACCGCCCAATACACACATTTCTCCCAGGTACTTCAGCAAGCTTCGTCGGACGACACGGACGTACAAATATCTGAGTTAGACCCTTGGATGATCCCTATTGTCCAATACCTGAAAGAGGGGAAACTCCCTGATGATAAGCAAGAGGCTGTCAAGGTTGTTAGGAAAGCCTCGACCTACGCTGTTAAAGATGACATCCTTTACAGAACATCTTTTAGCCATCCCTGGGCCAGATGTGTTTCGAAGGATGAAGGAGACTATGTTCTCCGTGAAATACATGAGGGCATCTGTGGTGCTCATGAAGGGGCTTTAGCAATATCCAGAAGGGCTGCCCTCTTAGGATATTATTGGCCAACGATGAACACAAATGCTAAGGAGTTTCAAATTTCCAGACCTTCCGGCTTCTGCTGCAAGAAACCTCTCCCTTCCTCTTCGATTCTCTCTTACTCCTTCGATTTCTTGGGTGTTTTCAATCTCTCAACAATGGTGCTCGAGGCTACAATGATCTGCATCGACAATTCCGAATGGATGAGGAACGGCGATTATGCTCCTTCCAGATTCCAAGCCCAAGCCGATGCCGTTAATCTCATTTGCGGAGCTAAAACCCAGTCTAACCCGGAGAATACAGTAGGAGTTCTTACAATGGCCGGAAAAGGGGTTCGGGTTTTGGTAACTCCTACAAGTGATCTTGGCAAGATTCTAGCGTGCATGCACGGAAAAAACAATAAATCTGATGGAGTTCTTCTTACAATTGTTCAAATGACTGTTGATATGATTTTCTCTTTAAATATTCTTCCCAAAGAAAAACATCTATCCCCAACATTCTTAGGAGTGAGTACTGTCCAATTTCAAGGTATTGAACAGCATTTTGGTTATCAGAAATTCTTTGGTCTTCACTCTTTTGATGCATCAGATTTGGTGTATAGTGGTTTAGAGATAGGTGGAGAGACAAACTTGGCTGCTGGGATTCAGGTGGCTCAGTTGGCTCTGAAGCATCGTCAAAACAAGAAGCAACAACAAAGAATTATTGTTTTTGCAGGAAGTCCTGCCAATCATGAAAAGAAGTTGTTGGAGATGATTGGAAAGAAATTAAAAAAGAACAATGTGGCACTAGATATTATTGATTTTGGTGAAGAAGATGATGGTAAGCCAGAGAAGCTGGAAGCCCTTCTTTCGGCTGTAAATAGTAACGACTCCAGTCACATTGTTCATGTTCCCTCAGGTCCAAATGCTCTTTCTGATGTACTTATTAGTACTCCAATCTTCACTGGTGATGGGGAGGGAGGAAGTGGATTTGCTGCAGCTGCTGCTGCAGCTTCAGCTGGTGGGGCCGGTTTTGATTTTGGTGTGGATCCCAACTTAGACCCTGAACTAGCACTTGCACTTCGAGTGTCAATGGAAGAGGAAAGGGCCAGACAGGAGGCAGCTGCTAAGAGAGCTGCTGAGGAGACTTCAAAGCAGGAAAAAGGAGGGGAACAGCCATCTGGCTCACAGGATACAACTATGAATGAACGTGCTAGTGCTGAATCTTCTGATGCTCAGAAGACAAGTGATCCAATGGAGGATGAAAATGCTCTGTTACAACAAGCCCTTGCAATGTCAATGGAAGATCCTGCCTCGAGTCAGGACCTGCGGGATACAGAAATGTCAGATGCAGCAATGGATCCAGAGTTGGCTCTTGCTCTTCAGTTGTCCGTGCAGGAGGATGCTAAAGACTCAACAAGCCAACCTGATATGAGTAAATTACTGGCAGACCAGTCATTTGTATCGTCCATTCTTGCATCGCTTCCAGGGGTTGATCCAAATGATCCATCAGTTAAAGATTTACTGGCTTCCATGCAAAGTCAGTCAAAGCCAGAGGACAAGAAGAATGAAGAAAAAGCCCCCAAGGAAGACGACGACAAATGA 3384 43.79 MGEEGRSLAVTPTWAFATVVTLMVSLGFFFQGTLKRTKKWLNRTKRKSLLAALDKIKEELMLFGLLSLLMGHWIVFVARICVKSSVLSSRFYPCALEIDLKRVRHISIASENLNSSVPREHNNDGIREYCPEGRESFASYESLEQLHRLIFVLGVTHVSYSFIAIALGMIKIYGWRAWENEAKALAIQNAQESVQASSTGPNIRRLSTFVFHHTSHPWSQHRVLVWLLCFSRQFWSSINRADYMALRLGFISTHELPISYDFHNYMLRSMDDEFRDMVGISVPLWIYAIACIFLNFHGSNIYFWLSFLPAILILLIGTKLHRVVVKLAVEVVDTSRRGYYRFNLRDELFWFGKPKLLLWSIQFISFQNAFEMATFIWSLWEIKEPSCFMDNVTYVGIRLAFGVITQFWCSFITFPLYVIVTQMGSKVKKSLVSENVRNSLHQWKRRVKARPVVSSSVALVGATSLSSSVCTMDDDGQIIDDFTVNCLEGSTSNTAQYTHFSQVLQQASSDDTDVQISELDPWMIPIVQYLKEGKLPDDKQEAVKVVRKASTYAVKDDILYRTSFSHPWARCVSKDEGDYVLREIHEGICGAHEGALAISRRAALLGYYWPTMNTNAKEFQISRPSGFCCKKPLPSSSILSYSFDFLGVFNLSTMVLEATMICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGKNNKSDGVLLTIVQMTVDMIFSLNILPKEKHLSPTFLGVSTVQFQGIEQHFGYQKFFGLHSFDASDLVYSGLEIGGETNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPANHEKKLLEMIGKKLKKNNVALDIIDFGEEDDGKPEKLEALLSAVNSNDSSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGFAAAAAAASAGGAGFDFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEETSKQEKGGEQPSGSQDTTMNERASAESSDAQKTSDPMEDENALLQQALAMSMEDPASSQDLRDTEMSDAAMDPELALALQLSVQEDAKDSTSQPDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQSKPEDKKNEEKAPKEDDDK 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2101581 2112501 - CrPI670011_10g003250.1 Cre10g0325 509627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0325 1127 MobiDBLite consensus disorder prediction 963 1013 - -
Cre10g0325 1127 MobiDBLite consensus disorder prediction 963 981 - -
Cre10g0325 1127 MobiDBLite consensus disorder prediction 1110 1127 - -
Cre10g0325 1127 Coils Coil 955 975 - -
Cre10g0325 1127 CDD VWA_26S_proteasome_subunit 654 912 - -
Cre10g0325 1127 SUPERFAMILY vWA-like 657 898 IPR036465 -
Cre10g0325 1127 Pfam von Willebrand factor type A domain 659 735 IPR002035 -
Cre10g0325 1127 CDD PSMD4_RAZUL 1067 1113 IPR049590 -
Cre10g0325 1127 MobiDBLite consensus disorder prediction 982 1006 - -
Cre10g0325 1127 PANTHER MLO-LIKE PROTEIN 1 2 456 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Cre10g0325 1127 Gene3D - 943 1028 - -
Cre10g0325 1127 ProSiteProfiles VWFA domain profile. 658 913 IPR002035 -
Cre10g0325 1127 FunFam 26S proteasome regulatory subunit N10 943 1028 - -
Cre10g0325 1127 Pfam Ubiquitin interaction motif 1047 1060 IPR003903 -
Cre10g0325 1127 Pfam Ubiquitin interaction motif 947 960 IPR003903 -
Cre10g0325 1127 Pfam Ubiquitin interaction motif 1014 1029 IPR003903 -
Cre10g0325 1127 Gene3D von Willebrand factor, type A domain 656 761 IPR036465 -
Cre10g0325 1127 Gene3D von Willebrand factor, type A domain 797 910 IPR036465 -
Cre10g0325 1127 Gene3D - 538 623 - -
Cre10g0325 1127 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 1014 1033 IPR003903 -
Cre10g0325 1127 MobiDBLite consensus disorder prediction 1086 1127 - -
Cre10g0325 1127 SMART uim 1045 1064 IPR003903 -
Cre10g0325 1127 SMART uim 1014 1033 IPR003903 -
Cre10g0325 1127 SMART uim 945 964 IPR003903 -
Cre10g0325 1127 Pfam Mlo family 5 457 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Cre10g0325 1127 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 945 964 IPR003903 -
Cre10g0325 1127 MobiDBLite consensus disorder prediction 1025 1048 - -
Cre10g0325 1127 SMART VWA_4 655 899 IPR002035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0325 K08472 - - csv:101217051 949.118
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0325 Cre-Chr10:2101581 Cre11g2216 Cre-Chr11:33868779 5.70E-102 dispersed
Cre01g0582 Cre-Chr1:5091700 Cre10g0325 Cre-Chr10:2101581 4.00E-38 transposed
Cre04g0674 Cre-Chr4:24717705 Cre10g0325 Cre-Chr10:2101581 1.00E-17 transposed
Cre05g1133 Cre-Chr5:10792689 Cre10g0325 Cre-Chr10:2101581 9.30E-138 transposed
Cre10g0325 Cre-Chr10:2101581 Cre04g1657 Cre-Chr4:34929619 6.60E-159 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre11g2216 . 5 547 MLO family AT5G53760 68.8 1.5e-212 736.1
Cre05g1133 . 6 466 MLO family AT5G53760 51.6 9.0e-128 454.5
Cre01g0581 . 10 333 MLO family AT5G53760 69.5 9.3e-125 444.5
Cre01g0582 . 39 266 MLO family AT5G53760 67.7 2.7e-84 310.1
Cre11g2216 . 1 528 MLO family AT1G26700 68.3 8.5e-208 720.3
Cre01g0581 . 1 333 MLO family AT1G26700 67.9 9.9e-124 441.0
Cre01g0582 . 39 266 MLO family AT1G26700 65.7 2.3e-80 297.0
Cre03g0540 . 8 536 MLO family AT2G39200 63.9 1.4e-192 669.8
Cre05g2268 . 7 499 MLO family AT2G39200 67.7 8.9e-192 667.2
Cre02g2410 . 8 505 MLO family AT2G39200 67.3 5.7e-191 664.5
Cre02g2410 . 1 416 MLO family AT1G61560 65.9 4.9e-160 561.2
Cre03g0540 . 1 416 MLO family AT1G61560 66.3 3.0e-157 552.0
Cre05g2268 . 7 408 MLO family AT1G61560 65.2 1.0e-152 537.0
Cre04g1720 . 28 422 MLO family AT1G61560 52.2 2.2e-115 412.9
Cre10g0276 . 29 423 MLO family AT1G61560 50.4 1.4e-109 393.7
Cre04g1720 . 18 490 MLO family AT2G17430 63.4 3.3e-172 602.1
Cre10g0276 . 29 490 MLO family AT2G17430 63.4 6.4e-160 561.2
Cre08g0871 . 4 468 MLO family AT2G17430 56.5 7.9e-142 501.1
Cre04g1720 . 7 567 MLO family AT2G17480 63.2 3.6e-196 681.8
Cre10g0276 . 5 574 MLO family AT2G17480 59.1 5.7e-178 621.3
Cre08g0871 . 11 453 MLO family AT2G17480 59.7 3.6e-148 522.3
Cre03g0540 . 8 463 MLO family AT2G17480 52.4 2.5e-125 446.4
Cre02g2410 . 8 463 MLO family AT2G17480 50.3 4.8e-124 442.2
Cre08g0871 . 1 383 MLO family AT1G42560 60.5 1.2e-131 466.8
Cre04g1720 . 28 386 MLO family AT1G42560 58.7 1.6e-120 429.9
Cre10g0276 . 29 388 MLO family AT1G42560 56.7 6.0e-112 401.4
Cre06g0828 . 6 419 MLO family AT4G24250 54.2 6.6e-117 417.9
Cre02g0375 . 43 329 MLO family AT4G24250 51.8 1.1e-79 294.3
Cre04g1720 . 8 387 MLO family AT5G65970 66.6 2.6e-144 509.2
Cre10g0276 . 28 388 MLO family AT5G65970 66.2 2.0e-136 483.0
Cre08g0871 . 7 381 MLO family AT5G65970 59.6 2.0e-125 446.4
Cre02g2410 . 2 381 MLO family AT5G65970 51.8 1.1e-105 380.9
Cre03g0540 . 2 381 MLO family AT5G65970 50.7 9.3e-102 367.9
Cre08g0871 . 2 531 MLO family AT2G33670 58.4 2.8e-165 578.9
Cre04g1720 . 20 470 MLO family AT2G33670 61.6 5.6e-158 554.7
Cre10g0276 . 29 471 MLO family AT2G33670 58.9 2.8e-141 499.2
Cre05g2268 . 64 525 MLO family AT1G11310 64.3 2.5e-169 592.4
Cre03g0540 . 63 506 MLO family AT1G11310 64.9 4.8e-165 578.2
Cre02g2410 . 63 520 MLO family AT1G11310 62.7 3.4e-163 572.0
Cre06g0828 . 5 501 MLO family AT2G44110 59.5 2.1e-165 579.3
Cre06g0828 . 1 508 MLO family AT4G02600 72.9 9.8e-214 740.0
Cre05g1133 . 3 560 MLO family AT1G11000 66.6 7.7e-212 733.8
Cre10g0325 . 1 494 MLO family AT1G11000 51.7 2.5e-130 463.0
Cre01g0581 . 10 236 MLO family AT1G11000 51.3 2.1e-68 257.3
Cre06g0828 . 1 508 MLO family AT4G02600 72.9 9.8e-214 740.0
Cre05g2268 . 64 525 MLO family AT1G11310 64.3 2.5e-169 592.4
Cre03g0540 . 63 506 MLO family AT1G11310 64.9 4.8e-165 578.2
Cre02g2410 . 63 520 MLO family AT1G11310 62.7 3.4e-163 572.0
Cre05g1133 . 3 560 MLO family AT1G11000 66.6 7.7e-212 733.8
Cre10g0325 . 1 494 MLO family AT1G11000 51.7 2.5e-130 463.0
Cre01g0581 . 10 236 MLO family AT1G11000 51.3 2.1e-68 257.3
Cre08g0871 . 2 531 MLO family AT2G33670 58.4 2.8e-165 578.9
Cre04g1720 . 20 470 MLO family AT2G33670 61.6 5.6e-158 554.7
Cre10g0276 . 29 471 MLO family AT2G33670 58.9 2.8e-141 499.2
Cre02g2410 . 1 416 MLO family AT1G61560 65.9 4.9e-160 561.2
Cre03g0540 . 1 416 MLO family AT1G61560 66.3 3.0e-157 552.0
Cre05g2268 . 7 408 MLO family AT1G61560 65.2 1.0e-152 537.0
Cre04g1720 . 28 422 MLO family AT1G61560 52.2 2.2e-115 412.9
Cre10g0276 . 29 423 MLO family AT1G61560 50.4 1.4e-109 393.7
Cre04g1720 . 18 490 MLO family AT2G17430 63.4 3.3e-172 602.1
Cre10g0276 . 29 490 MLO family AT2G17430 63.4 6.4e-160 561.2
Cre08g0871 . 4 468 MLO family AT2G17430 56.5 7.9e-142 501.1
Cre04g1720 . 7 567 MLO family AT2G17480 63.2 3.6e-196 681.8
Cre10g0276 . 5 574 MLO family AT2G17480 59.1 5.7e-178 621.3
Cre08g0871 . 11 453 MLO family AT2G17480 59.7 3.6e-148 522.3
Cre03g0540 . 8 463 MLO family AT2G17480 52.4 2.5e-125 446.4
Cre02g2410 . 8 463 MLO family AT2G17480 50.3 4.8e-124 442.2
Cre08g0871 . 1 383 MLO family AT1G42560 60.5 1.2e-131 466.8
Cre04g1720 . 28 386 MLO family AT1G42560 58.7 1.6e-120 429.9
Cre10g0276 . 29 388 MLO family AT1G42560 56.7 6.0e-112 401.4
Cre04g1720 . 8 387 MLO family AT5G65970 66.6 2.6e-144 509.2
Cre10g0276 . 28 388 MLO family AT5G65970 66.2 2.0e-136 483.0
Cre08g0871 . 7 381 MLO family AT5G65970 59.6 2.0e-125 446.4
Cre02g2410 . 2 381 MLO family AT5G65970 51.8 1.1e-105 380.9
Cre03g0540 . 2 381 MLO family AT5G65970 50.7 9.3e-102 367.9
Cre11g2216 . 5 547 MLO family AT5G53760 68.8 1.5e-212 736.1
Cre05g1133 . 6 466 MLO family AT5G53760 51.6 9.0e-128 454.5
Cre01g0581 . 10 333 MLO family AT5G53760 69.5 9.3e-125 444.5
Cre01g0582 . 39 266 MLO family AT5G53760 67.7 2.7e-84 310.1
Cre03g0540 . 8 536 MLO family AT2G39200 63.9 1.4e-192 669.8
Cre05g2268 . 7 499 MLO family AT2G39200 67.7 8.9e-192 667.2
Cre02g2410 . 8 505 MLO family AT2G39200 67.3 5.7e-191 664.5
Cre06g0828 . 6 419 MLO family AT4G24250 54.2 6.6e-117 417.9
Cre02g0375 . 43 329 MLO family AT4G24250 51.8 1.1e-79 294.3
Cre11g2216 . 1 528 MLO family AT1G26700 68.3 8.5e-208 720.3
Cre01g0581 . 1 333 MLO family AT1G26700 67.9 9.9e-124 441.0
Cre01g0582 . 39 266 MLO family AT1G26700 65.7 2.3e-80 297.0
Cre06g0828 . 5 501 MLO family AT2G44110 59.5 2.1e-165 579.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006348 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 36