Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0334 ATGGCTTCCATTTCTTCTTCTCTTCTTTCTCTCTTCCTCTTCTTCCCTTTCTTTTCAGGTGTAAATGCAGCAACTTTCACCATTTTAAATCAGTGTAGTTACACAGTGTGGCCGGGAGTTTTGTCCGGCGCCGGCACATCACAGCTCTCCACCACCGGCTTCGTCCTGCAGACAGGACAGTCCAACGTCCTCACCATGCCCCCGGCATGGTCCGGCCGTATTTGGGGCCGCACTTATTGCTCCCAAGATGCCGCCGGCAGATTCTCCTGCGCCACTGCCGACTGCGGCTCCGGCGTCGTCGAATGCAATGGTGCTGGTGCTACCCCCCCCGCCACCCTTGCCGAGTTCACTCTCAATGGCGCCGGTGGGCTCGATTTCTTCGATGTCAGCCTTGTTGATGGATACAATGTGCCCATGTTAATCACCCCACAAGATGGAACAGGTGGAGGAAATTGCACGACCATTGGGTGTGCGACAGATTTAAATAGCGAGTGTCCACCGGAGCTAAGAGTGGTGGCAAGTGACGCCGGTGGGCGAAGCATAGCGTGTAAGAGCGCATGTGGCGCATTTGGTGACGCACAATATTGTTGTAGTGGCGAATATGGAAATCCAAACACTTGTCGACCGTCATCTTACTCACAGTTCTTCAAGTCCGCATGTCCTCAAGCTTATAGTTACGCCTACGATGACGGTACCAGTACATTCACTTGCACTTCTGCCAATTACCTCATCACTTTCTGTCCTTCTCTTTCAACTAGTGTGAAATCATCAAACGGGCAGTATCCCCGGGCAGTGGATATCTCAAGAGCCGAGCATTCGGGCAGACCGTTGACGTCAGTAGCCGTTATCTCCACCGTGACGGCAGCTCTAAGTCGGCGATTTTTGCGTCTCTTTTAA 897 52.62 MASISSSLLSLFLFFPFFSGVNAATFTILNQCSYTVWPGVLSGAGTSQLSTTGFVLQTGQSNVLTMPPAWSGRIWGRTYCSQDAAGRFSCATADCGSGVVECNGAGATPPATLAEFTLNGAGGLDFFDVSLVDGYNVPMLITPQDGTGGGNCTTIGCATDLNSECPPELRVVASDAGGRSIACKSACGAFGDAQYCCSGEYGNPNTCRPSSYSQFFKSACPQAYSYAYDDGTSTFTCTSANYLITFCPSLSTSVKSSNGQYPRAVDISRAEHSGRPLTSVAVISTVTAALSRRFLRLF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2155181 2157885 - CrPI670011_10g003340.1 Cre10g0334 509636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0334 298 ProSiteProfiles Thaumatin family profile. 23 248 IPR001938 -
Cre10g0334 298 PANTHER OS03G0233200 PROTEIN 12 248 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cre10g0334 298 CDD TLP-PA 25 247 - -
Cre10g0334 298 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Cre10g0334 298 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Cre10g0334 298 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Cre10g0334 298 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Cre10g0334 298 SMART tha2 26 248 IPR001938 -
Cre10g0334 298 SUPERFAMILY Osmotin, thaumatin-like protein 24 249 IPR037176 -
Cre10g0334 298 Gene3D Thaumatin 24 248 IPR037176 -
Cre10g0334 298 FunFam THAUMATIN-LIKE PROTEIN 1 24 248 - -
Cre10g0334 298 Pfam Thaumatin family 30 248 IPR001938 -
Cre10g0334 298 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Cre10g0334 298 PIRSF PR5 1 292 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1652 Cre-Chr4:34895415 Cre10g0334 Cre-Chr10:2155181 4.10E-95 dispersed
Cre08g0218 Cre-Chr8:5676356 Cre10g0334 Cre-Chr10:2155181 1.30E-75 dispersed
Cre08g1372 Cre-Chr8:26746201 Cre10g0334 Cre-Chr10:2155181 9.70E-92 dispersed
Cre09g0413 Cre-Chr9:4015732 Cre10g0334 Cre-Chr10:2155181 6.80E-66 dispersed
Cre10g0334 Cre-Chr10:2155181 Cre10g2101 Cre-Chr10:35623245 6.00E-67 dispersed
Cre10g0333 Cre-Chr10:2142147 Cre10g0334 Cre-Chr10:2155181 7.90E-81 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0334 - - - 0.0