Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0343 ATGGATGATATTATTATTTCTCCTTCTTCTTCTTCACCAAATTCAACTACTCCTACTCTTCAACAAAGGCTTCAATTCATCCTCCATAATCGCCCTGAATGGTGGGCTTATTCCATTTTTTGGTGGGCTTCTAAAGATATCACTGGGAATCTTATTTTCACTTGGAGAGATGGCCATTTACGTGGCACCCGAGACGGCGGCGGTAGTGGCGGTGGCGGTGGCGGTGGTGGACAACTCATTAGTTTCGGGTTCGATGAAGTTTCCGTGGATCGAGTGGGAGGTGCCGATTTCACCAACTTGGAATGGTACTATACGGTATCTATCACTCGGTCGTATGGTGCGGTGGATAATGTGGTCGGTCGGGTGTTCGACTCGAGTGCGTACATCTGGTTGACGGCGGACGATGATGGTCTACATTTGTACGAATGCGAACGAGTAAAAGAAGCACGTTCGCGTGGGATTCAAACATTGGTTTTTGTTTCTACATCTGTTGGGGTTCTGGAATTAGGTTCTTCTGAGCTGATTAAACAAGATTGGAATTTAGTTCAGTATGCAAAATCACTTTTTGGATCTGCTTCTTCTTCAAGTTTTACACTTTTTAAACAAAAAGATCATGTGGGTACTGGTGGTGGAGGAATAATTCAACCGCAACCTCCGTCGTGCTCCGATGTGGTCAAGAGAGAGATGAGCCGTGATGGTGGCCGTGGCGGAGGAGGGTCGTCCTCCGATTCCCTCTCTGATAACTCCGATGGAAATTTCATGTCAATCGTAAATAACAATAACGTCGATAACAAGAGGGGAAAGAGATCAGCAAAGAATAAAACAGAATCCTCGCTGCCTGTCAACCACGTGGAAGCAGAACGGCAGCGACGACAGAAGCTGAACCAACGATTCTACGCGCTCCGATCAGTGGTTCCGAATGTATCGAAAATGGACAAAGCTTCTTTACTCGCCGACGCAGCAGATTACATCAGGGAGCTGAAGTCCAAGGTTCAAAAATTGGAGTCTAAGCTAAAACAACCACAGCACCAAACAAGTAGCAGCATGAGCAATGCATTTGATCAGAACCGAAGCAATATCTTGACGGTCGAGCAGACAATGAGCTCAACGAGTTACGCAATAAACAAAAGCAGCAGCAGCAGCAGCAACAACAACAACAACGTAGAAGTGCGACTTATGGGATCGGAAGCAGTTGTTAGAGTTCAATGCAGAGATGAAAATTACCCATCAGCAAGGCTTTTGAATGTGCTAAGAGATTTGGGACTTCAAGTTCATCATGCAAGTTTGTCAAGTGTAAATGATCTGATGCTGCAAGATGTTATTGTTAGAGTTCCTCATGGAACAGCCTTGAGAGAAAAGACCTTAAAAACAGCCATACTTCAAAGACTTGAATAA 1395 44.95 MDDIIISPSSSSPNSTTPTLQQRLQFILHNRPEWWAYSIFWWASKDITGNLIFTWRDGHLRGTRDGGGSGGGGGGGGQLISFGFDEVSVDRVGGADFTNLEWYYTVSITRSYGAVDNVVGRVFDSSAYIWLTADDDGLHLYECERVKEARSRGIQTLVFVSTSVGVLELGSSELIKQDWNLVQYAKSLFGSASSSSFTLFKQKDHVGTGGGGIIQPQPPSCSDVVKREMSRDGGRGGGGSSSDSLSDNSDGNFMSIVNNNNVDNKRGKRSAKNKTESSLPVNHVEAERQRRQKLNQRFYALRSVVPNVSKMDKASLLADAADYIRELKSKVQKLESKLKQPQHQTSSSMSNAFDQNRSNILTVEQTMSSTSYAINKSSSSSSNNNNNVEVRLMGSEAVVRVQCRDENYPSARLLNVLRDLGLQVHHASLSSVNDLMLQDVIVRVPHGTALREKTLKTAILQRLE 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2210859 2212901 - CrPI670011_10g003430.1 Cre10g0343 509645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0343 464 MobiDBLite consensus disorder prediction 338 355 - -
Cre10g0343 464 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 20 189 IPR025610 -
Cre10g0343 464 Coils Coil 317 344 - -
Cre10g0343 464 Gene3D - 260 345 IPR036638 GO:0046983(InterPro)
Cre10g0343 464 MobiDBLite consensus disorder prediction 208 288 - -
Cre10g0343 464 Pfam Helix-loop-helix DNA-binding domain 282 328 IPR011598 GO:0046983(InterPro)
Cre10g0343 464 MobiDBLite consensus disorder prediction 237 264 - -
Cre10g0343 464 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 346 IPR036638 GO:0046983(InterPro)
Cre10g0343 464 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 278 327 IPR011598 GO:0046983(InterPro)
Cre10g0343 464 PANTHER MYC 16 462 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Cre10g0343 464 MobiDBLite consensus disorder prediction 334 355 - -
Cre10g0343 464 SMART finulus 284 333 IPR011598 GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0343 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1817 Cre-Chr3:35019674 Cre10g0343 Cre-Chr10:2210859 3.20E-07 dispersed
Cre06g1042 Cre-Chr6:4136872 Cre10g0343 Cre-Chr10:2210859 1.10E-75 dispersed
Cre06g1043 Cre-Chr6:4142711 Cre10g0343 Cre-Chr10:2210859 1.20E-71 dispersed
Cre07g0393 Cre-Chr7:1651226 Cre10g0343 Cre-Chr10:2210859 6.10E-08 dispersed
Cre09g1145 Cre-Chr9:12527079 Cre10g0343 Cre-Chr10:2210859 1.60E-30 dispersed
Cre10g0343 Cre-Chr10:2210859 Cre11g1447 Cre-Chr11:21715853 1.10E-27 dispersed
Cre10g0343 Cre-Chr10:2210859 Cre10g0420 Cre-Chr10:3081178 7.90E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g242 . . . . . Bpe07g00211 Bma07g01022 . Cmo06g00587 Cmo16g01278 . . . . . Cpe14g01018 . . . . . . . . Cla10g00083 Cam10g0080 Cec10g0083 Cco10g0087 Clacu10g0081 Cmu10g0928 Cre10g0343 . . . . Lsi07g01109 . . Cme06g02389 Blo03g00803 . . . Bpe08g00900 . . . . . . Cma06g00583 Cma16g01232 Car06g00517 Car16g01160 Cpe08g00916 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013416 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54468 PF14215 bHLH-MYC_N 4.90E-35 CL0161 Cre TF