Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0385 ATGGAAGGAGACCGGATTCTACCTTCTGAAACCGTGATGGCTACCAACAAGATTACTGTTACCAACACATACAAGCACGATCAAATGTATTGGCGGCAAAAGTTGATCAGGTACTCCCTCCGCCGCCGTTGCCGCTCTGTGGATATGAGCGGAGAAGCTGAGCAGAAACTGGAGGCTCGGCGTCTCAGAGAATTGGCAGAGAAGAAGTTCAGAGATTCCAATCTCAAGTCTGCTCTCAAGTACGCCAAGCGAGCCCACCGCCGCGATCCAAACCTTGACGGCGCCGCCGAAATCCTCACTTCCTTACAGATTCTCCGAGTCGCCGCCGACTCTCCGGATGACTGGTACCGGATTCTTCAGGTGGAGCCTTTCGCTCACATTAACACAATAAAAAAACAGTACAAGAAGCTCGCTCTGCTTCTGCATCCGGATAAGAATCCCTATTTCGGCTCCGAGGAGGCGTTCAAGCTCGTCGGCGAGGCGTTTCACTTTTTTTCCGATAATGTCAGGAGGAAGGAGTACGATTTGAAGCTCCGGATTCGGATTCAGGACGAGAAGATTGGAGATGCGGATGTGGAGAGCGAGACGTTTTGGACTGCTTGCTCGACGTGCCGGCTTTTACACCAGTTCGAAAAGAGGTACGTAGGGCATAATTTAGTCTGCCCTAATTGTAGGAAAAGTTTTAAGGCCGTTGAAGTTGTGTATAATGAACCTGAGATTAGGGAAATTGGGGTCATGGTTAGGGGTCGAAGGTTGAGGAATTTGAGTTCTAGGCAAAATTCTGGTAGTTTCGAGGGATTAAAAGAATCTGTGAATACTAATCAATTGAAGAGAAATACTACAGTGAGTAAGACGAATGGTGAGAAGAAGAAAGGTCTGGAGTTAAATGGAAAAGCTGGTTCTATAGAAGGTGAAGTTAGAAATGGCGATTTAGAGGGAGTTGATAATGATGATGAGATATGTATAAGAAGATTAAGAAGTGGGAGTTTGAGGAAGAAGATGAGTAGTGTTGGTGAGGTTTTAGAGAGGTCTAAGCTGAAGCCTGTTAAAATGGAAGAGGAAATGATGACTTTGGCTGAATTACAGTCTCAAGTGATTCAGAAAGCACGAAAAGAGAAGGCGAAGCTGAAGTTAAAGGAGGAGGAGGAAGCAGAGGAAAGAGAGAATAAGAGAAAGAAAGGGGTTGAGGAGAATGACGATGACGACGAGAGACTAACTTTGAAAGAGATGGAAGGTCTACTACGGATTCGTAGGCAAGGAGCATCAAAGCGTCCCGGGTTTTTGGAGAATGCACAGCAAAAGAATTCCAAGAAGAATGTGAATCTGGAAACTCAGAAGCAAGAAGCTTCATGTAATGGTGTTGATTTGGATATGATGGTGGTGGAAGATTCAGATTTTTATGATTTTGACAAGGACAGAATGGAGAGAAGTTTCAAAAAAGGGCAAGTGTGGGCTATATATGATGATGATGATGGAATGCCTAGGCATTATGGTTTGATTGAAGAAGTTACTGTAAATCCTTTTGAAGTGAAAATGAGTTGGTTGGATGTTCAAAACAATGGAGATGAAAGACTACTTTGTTGGGAGAAGATGGGATTTCATGTATCTTGTGGTAGATTTAAGGTCACTAAAAAAACAACCATTCATTCATTGAACATTTTTTCTCATGTTGTGGATTGTGAAAGAGCAGCAAAGGAAGTCTATAGGATTTATCCCAAAAAGGGATCAGTATGGGCACTTTACAAAGAAGAAGAAGGTTTGGATGCTGAGAAGAGAAGAAACCTTTTGAGCAAAGGGAAACGAACTTACGATATCGCGGTGTTTTTAACAACTTACAGTGAGATGCATGGTTTAAGCATGGCTTATCTTGAGAAGGTTGATGGTTACAAGACCATATTCAAGAGAAAAGAGATCGGTTATCATGCTATTAGATGGTTCGAAAAGGACAATATCCAATTATTTTCGCATCAAATTCCTGCACGGAAGCTTTCTATAGATGAGGCTCTTGGGCATCTGAAGGACTGTTGGGAACTTGATCCAGCTTCTCTTCCTTCGGATTTGCTAACCACCTATTGGAACAAATAG 2085 43.02 MEGDRILPSETVMATNKITVTNTYKHDQMYWRQKLIRYSLRRRCRSVDMSGEAEQKLEARRLRELAEKKFRDSNLKSALKYAKRAHRRDPNLDGAAEILTSLQILRVAADSPDDWYRILQVEPFAHINTIKKQYKKLALLLHPDKNPYFGSEEAFKLVGEAFHFFSDNVRRKEYDLKLRIRIQDEKIGDADVESETFWTACSTCRLLHQFEKRYVGHNLVCPNCRKSFKAVEVVYNEPEIREIGVMVRGRRLRNLSSRQNSGSFEGLKESVNTNQLKRNTTVSKTNGEKKKGLELNGKAGSIEGEVRNGDLEGVDNDDEICIRRLRSGSLRKKMSSVGEVLERSKLKPVKMEEEMMTLAELQSQVIQKARKEKAKLKLKEEEEAEERENKRKKGVEENDDDDERLTLKEMEGLLRIRRQGASKRPGFLENAQQKNSKKNVNLETQKQEASCNGVDLDMMVVEDSDFYDFDKDRMERSFKKGQVWAIYDDDDGMPRHYGLIEEVTVNPFEVKMSWLDVQNNGDERLLCWEKMGFHVSCGRFKVTKKTTIHSLNIFSHVVDCERAAKEVYRIYPKKGSVWALYKEEEGLDAEKRRNLLSKGKRTYDIAVFLTTYSEMHGLSMAYLEKVDGYKTIFKRKEIGYHAIRWFEKDNIQLFSHQIPARKLSIDEALGHLKDCWELDPASLPSDLLTTYWNK 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2636218 2640718 - CrPI670011_10g003850.1 Cre10g0385 509687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0385 694 Coils Coil 428 448 - -
Cre10g0385 694 Gene3D DnaJ domain 103 201 IPR036869 -
Cre10g0385 694 Coils Coil 359 398 - -
Cre10g0385 694 Pfam DnaJ domain 114 175 IPR001623 -
Cre10g0385 694 SUPERFAMILY Chaperone J-domain 103 179 IPR036869 -
Cre10g0385 694 PRINTS DnaJ domain signature 116 134 IPR001623 -
Cre10g0385 694 PRINTS DnaJ domain signature 150 170 IPR001623 -
Cre10g0385 694 PRINTS DnaJ domain signature 134 149 IPR001623 -
Cre10g0385 694 MobiDBLite consensus disorder prediction 426 446 - -
Cre10g0385 694 Pfam Domain of unknown function (DUF3444) 458 664 IPR024593 -
Cre10g0385 694 CDD DnaJ 114 167 IPR001623 -
Cre10g0385 694 ProSiteProfiles dnaJ domain profile. 114 178 IPR001623 -
Cre10g0385 694 MobiDBLite consensus disorder prediction 424 446 - -
Cre10g0385 694 MobiDBLite consensus disorder prediction 376 406 - -
Cre10g0385 694 PANTHER BNAC03G44070D PROTEIN 56 683 - -
Cre10g0385 694 SMART dnaj_3 113 170 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0385 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2456 Cre-Chr9:43879638 Cre10g0385 Cre-Chr10:2636218 2.10E-62 dispersed
Cre10g0385 Cre-Chr10:2636218 Cre06g1199 Cre-Chr6:5859963 3.30E-07 dispersed
Cre10g0385 Cre-Chr10:2636218 Cre11g1875 Cre-Chr11:30417842 1.00E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g749 . . . . . . . . Cmo06g00627 . . . . . . . . . . . . . . . Cla10g00123 Cam10g0123 Cec10g0132 Cco10g0132 Clacu10g0128 Cmu10g0975 Cre10g0385 Cone8ag0498 Cone12ag0497 . . Lsi07g01156 . Chy04g00132 . . . Bda07g00072 Bda09g00760 Bpe08g00803 Bpe11g00312 . . Sed02g0043 . Cmo19g00227 Cma06g00619 . Car06g00553 . . Cpe15g00185 Bhi05g00433 Tan07g2028 Cmetu04g1055 Lac11g2456 Hepe06g0983 . Lcy12g1980 Cla09g01084 Cam09g1138 Cec09g1145 Cco09g1163 . . Cre09g1101 . Csa03g04572 . Cme04g00155
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013922 1 1 1 0 0 1 1 1 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 24