Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0387 ATGTTCAAGGAAATCCATCAGGGAGAGGTTGCGGCTCGAACCATGAGTGGCAGTGAGATGGAGAAACCACCAAAAGACAAGGAGACGAAGACCCCGTCTCCTACTACTACTACACAGGAGCAGACTACAACCACAAGCGCTGGCACAGTTAATCCTGATTGGTCGGGTTTTCAGGCATATTCTCCTATTCCTCCACATGGTTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGAGTTCAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATATGCTCACCCTTCCATTCCCCCGGGATCATATCCTTTTAGCCCCTTTGCAATGCCTTCTCCAAATGGAATCACCGAGGCCTCTGGTAATACAGCAGGCAGTTTGGAGGGAGACGTTAAGCCACCTGAAGTGAAGGAAAAGCTGCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACAGGGAAGAACAATGAGCTGGGTAAAACATCTGGAACATCTGCTAATGGAGCATACTCTAAGAGTGCTGAGAGTGCCAGCGAAGGTACAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCCAGACACTTTGGAAGTTGAAGTATCTCAGAATGGTAACTCAATGCATGGTACTCAAAATGGAGGATCTAATACTCAGGCTATGGCTGCCATCCCATTGGCAACTGCTGGGGCCCCAGGAGTCGTTCCTGGTCCCACGACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCATCCACTATCCCTGCTATGCGTGGAAAGGTTCAATCGACTCCAGTTGCTGGAGGACTAGTTACCGCTGGATCTCGGGATAGCATACAGTCACAGCTTTGGCTGCAGGATGAGAGAGAGATTAAAAGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGACGATCCCGGTTACGCAAGCAGGCAGAATGTGACGAATTAGCACATCGAGCTGAAGCTTTACAAGAAGAAAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAGCTACTTTCAGAGAATGCTTCTCTGAAGGAAAGACTCGGGGAGGTTCCGGGAAACAAAGAAGTAAGGGCCAGCAGGAACGGCCAGCGTTTAAGTAACGAAACCACACAACCTACAGAGTCAGAGGTTGTGCAAGTTGGTAACAAGAATTGA 1260 47.46 MFKEIHQGEVAARTMSGSEMEKPPKDKETKTPSPTTTTQEQTTTTSAGTVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEASGNTAGSLEGDVKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTSGTSANGAYSKSAESASEGTSEGSDANSQNESQPKLGSRPDTLEVEVSQNGNSMHGTQNGGSNTQAMAAIPLATAGAPGVVPGPTTNLNIGMDYWGASSTIPAMRGKVQSTPVAGGLVTAGSRDSIQSQLWLQDEREIKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSEYEQLLSENASLKERLGEVPGNKEVRASRNGQRLSNETTQPTESEVVQVGNKN 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2647396 2652331 + CrPI670011_10g003870.1 Cre10g0387 509689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0387 419 Gene3D - 316 370 - -
Cre10g0387 419 MobiDBLite consensus disorder prediction 162 219 - -
Cre10g0387 419 Coils Coil 333 381 - -
Cre10g0387 419 Pfam G-box binding protein MFMR 19 112 IPR012900 -
Cre10g0387 419 MobiDBLite consensus disorder prediction 30 56 - -
Cre10g0387 419 Pfam bZIP transcription factor 313 375 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0387 419 Pfam Disordered region downstream of MFMR 151 278 - -
Cre10g0387 419 MobiDBLite consensus disorder prediction 129 219 - -
Cre10g0387 419 SUPERFAMILY Leucine zipper domain 316 372 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0387 419 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 320 335 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0387 419 MobiDBLite consensus disorder prediction 315 338 - -
Cre10g0387 419 MobiDBLite consensus disorder prediction 394 419 - -
Cre10g0387 419 CDD bZIP_plant_GBF1 318 368 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0387 419 MobiDBLite consensus disorder prediction 375 419 - -
Cre10g0387 419 SMART brlzneu 313 377 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g0387 419 MobiDBLite consensus disorder prediction 1 57 - -
Cre10g0387 419 PANTHER G-BOX-BINDING FACTOR 3-RELATED 37 404 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0043565(InterPro)
Cre10g0387 419 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 315 378 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0183 Cre-Chr5:1854128 Cre10g0387 Cre-Chr10:2647396 2.60E-24 dispersed
Cre10g0387 Cre-Chr10:2647396 Cre09g1104 Cre-Chr9:11509437 6.80E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54469 PF16596 MFMR_assoc 4.30E-49 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0387 K09060 - csv:101206627 725.702