Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g0387 | ATGTTCAAGGAAATCCATCAGGGAGAGGTTGCGGCTCGAACCATGAGTGGCAGTGAGATGGAGAAACCACCAAAAGACAAGGAGACGAAGACCCCGTCTCCTACTACTACTACACAGGAGCAGACTACAACCACAAGCGCTGGCACAGTTAATCCTGATTGGTCGGGTTTTCAGGCATATTCTCCTATTCCTCCACATGGTTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGAGTTCAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATATGCTCACCCTTCCATTCCCCCGGGATCATATCCTTTTAGCCCCTTTGCAATGCCTTCTCCAAATGGAATCACCGAGGCCTCTGGTAATACAGCAGGCAGTTTGGAGGGAGACGTTAAGCCACCTGAAGTGAAGGAAAAGCTGCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACAGGGAAGAACAATGAGCTGGGTAAAACATCTGGAACATCTGCTAATGGAGCATACTCTAAGAGTGCTGAGAGTGCCAGCGAAGGTACAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCCAGACACTTTGGAAGTTGAAGTATCTCAGAATGGTAACTCAATGCATGGTACTCAAAATGGAGGATCTAATACTCAGGCTATGGCTGCCATCCCATTGGCAACTGCTGGGGCCCCAGGAGTCGTTCCTGGTCCCACGACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCATCCACTATCCCTGCTATGCGTGGAAAGGTTCAATCGACTCCAGTTGCTGGAGGACTAGTTACCGCTGGATCTCGGGATAGCATACAGTCACAGCTTTGGCTGCAGGATGAGAGAGAGATTAAAAGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGACGATCCCGGTTACGCAAGCAGGCAGAATGTGACGAATTAGCACATCGAGCTGAAGCTTTACAAGAAGAAAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAGCTACTTTCAGAGAATGCTTCTCTGAAGGAAAGACTCGGGGAGGTTCCGGGAAACAAAGAAGTAAGGGCCAGCAGGAACGGCCAGCGTTTAAGTAACGAAACCACACAACCTACAGAGTCAGAGGTTGTGCAAGTTGGTAACAAGAATTGA | 1260 | 47.46 | MFKEIHQGEVAARTMSGSEMEKPPKDKETKTPSPTTTTQEQTTTTSAGTVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEASGNTAGSLEGDVKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTSGTSANGAYSKSAESASEGTSEGSDANSQNESQPKLGSRPDTLEVEVSQNGNSMHGTQNGGSNTQAMAAIPLATAGAPGVVPGPTTNLNIGMDYWGASSTIPAMRGKVQSTPVAGGLVTAGSRDSIQSQLWLQDEREIKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSEYEQLLSENASLKERLGEVPGNKEVRASRNGQRLSNETTQPTESEVVQVGNKN | 419 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2647396 | 2652331 | + | CrPI670011_10g003870.1 | Cre10g0387 | 509689 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g0387 | 419 | Gene3D | - | 316 | 370 | - | - | |
Cre10g0387 | 419 | MobiDBLite | consensus disorder prediction | 162 | 219 | - | - | |
Cre10g0387 | 419 | Coils | Coil | 333 | 381 | - | - | |
Cre10g0387 | 419 | Pfam | G-box binding protein MFMR | 19 | 112 | IPR012900 | - | |
Cre10g0387 | 419 | MobiDBLite | consensus disorder prediction | 30 | 56 | - | - | |
Cre10g0387 | 419 | Pfam | bZIP transcription factor | 313 | 375 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g0387 | 419 | Pfam | Disordered region downstream of MFMR | 151 | 278 | - | - | |
Cre10g0387 | 419 | MobiDBLite | consensus disorder prediction | 129 | 219 | - | - | |
Cre10g0387 | 419 | SUPERFAMILY | Leucine zipper domain | 316 | 372 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g0387 | 419 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 320 | 335 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g0387 | 419 | MobiDBLite | consensus disorder prediction | 315 | 338 | - | - | |
Cre10g0387 | 419 | MobiDBLite | consensus disorder prediction | 394 | 419 | - | - | |
Cre10g0387 | 419 | CDD | bZIP_plant_GBF1 | 318 | 368 | IPR045314 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g0387 | 419 | MobiDBLite | consensus disorder prediction | 375 | 419 | - | - | |
Cre10g0387 | 419 | SMART | brlzneu | 313 | 377 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g0387 | 419 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Cre10g0387 | 419 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 37 | 404 | IPR044827 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0043565(InterPro) | |
Cre10g0387 | 419 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 315 | 378 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0183 | Cre-Chr5:1854128 | Cre10g0387 | Cre-Chr10:2647396 | 2.60E-24 | dispersed | |
Cre10g0387 | Cre-Chr10:2647396 | Cre09g1104 | Cre-Chr9:11509437 | 6.80E-117 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54469 | PF16596 | MFMR_assoc | 4.30E-49 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g0387 | K09060 | - | csv:101206627 | 725.702 |