Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0400 ATGGAGGGGACTGCTAATGGCGGCGATGCTGGATTGGCTTCCGGGAGTGGCAACTCTCAGCCGACGGTGCCGGCTCCTATCACTAATTCTAACGCGCCTCCACCGTTCTTGAGTAAGACATATGATATGGTGGATGATCCGGCTACCGATGCGGTTGTGTCCTGGAGCCCTACGAATAATAGCTTTGTGGTTTGGAACCCGCCTGAGTTCGCTAGGGATCTTTTGCCCAAATACTTCAAGCATAATAACTTCTCCAGCTTCGTCAGGCAGCTCAATACCTATGGCTTCAGGAAAGTTGATCCAGACCGTTGGGAATTTGCTAATGAAGGCTTCTTAAGAGGTCAGAAACATCTGCTTAAGAGCATTACTCGACGGAAACCTGTCCATGGGCACAGTCAGCAACAACCACAGCAGTCTCATGGACAAAGTTCTTCAGTCGGAGCTTGTGTGGAAGTTGGTAAGTTTGGTTTGGAGGAAGAGGTTGAGAGGCTTAAGAGAGACAAAAATGTACTCATGCAGGAACTTGTGAGATTGAGGCAGCAGCAACAGACTACTGACAACCAGTTGCAAACTATGGTACAGCGTCTACAGGGGATGGAGCAGCGACAGCAGCAGATGATGTCATTCCTTGCAAAGGCTGTGCAAAGTCCTGGCTTTTTGGCTCAGTTTGTGCAGCAGCAAAATGAAAGTACTAGACGCATAAGTGAAGCTAATAAAAAGCGAAGGCTAAAGCAGGATGGAATTGCTGAGTCTGAGCATTCTACTGTTCCTGATGGGCAAATTGTGAAATATCAACCTCTCATGAATGAGGCAGCAAAAACAATGCTGAGGCAGATATTGAAAATAGATACTTCACGTTTGGAACCATTGAACCATAATACCGACAGTTTCCTAATTAGTGATGGTTTGCAATCATCGTGTGCAGCAGTGGACAATGGGAACTCTTCCAGTTCTGTATCAGGCGTGACTCTTCAAGAGGTACCTCCAACCTCATCTTTTAATTCAGCTGCTTCTGGTGTTGCTCCTCATGGCCCCTCAACAGCCAAATCAGAAATGCAATCGTCACCCCAAGCTACAAATTCTGACAAGGTTTCAACTGCTCCCTTTTCTGTTAATGCTGTGCGGGGTCCAGGGGCACGAGAAGCTTCTCCCCTGTCGGTTTCTGAGACGGACGTAATCATGCCTGAGCTTTCCCATATATCTGACATGGTGCCTGAGAACATTATTGATGTCCCTGAAGTGGATTATAGGGTACCCGAGGCAGTAAATGGTGCATTTATAAGTCCAAGCTTTTTGGATGCCAATGGAACTATTCCAATAGAGATTGATAATATATCCCCTGATGCTGATATTGATGCCTTGCTAGACAATTCCAACTTCTGGGATGATTTGCTTGTGCAAAGTCCATGTCAAGACGAGGAGGTTGACTTTATGGTTGGAGGAGGATTACCAAAGACGAATGATGTGCAGCCAGTAGAAAATGCATGGGACAAATCTAAACACGTGGATAAACTTACAGAACAGATGGGCCTTCTCACTTCAGAAATTAAAAGGGTTTGA 1560 45.96 MEGTANGGDAGLASGSGNSQPTVPAPITNSNAPPPFLSKTYDMVDDPATDAVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPVHGHSQQQPQQSHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESTRRISEANKKRRLKQDGIAESEHSTVPDGQIVKYQPLMNEAAKTMLRQILKIDTSRLEPLNHNTDSFLISDGLQSSCAAVDNGNSSSSVSGVTLQEVPPTSSFNSAASGVAPHGPSTAKSEMQSSPQATNSDKVSTAPFSVNAVRGPGAREASPLSVSETDVIMPELSHISDMVPENIIDVPEVDYRVPEAVNGAFISPSFLDANGTIPIEIDNISPDADIDALLDNSNFWDDLLVQSPCQDEEVDFMVGGGLPKTNDVQPVENAWDKSKHVDKLTEQMGLLTSEIKRV 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2841037 2845456 - CrPI670011_10g004000.1 Cre10g0400 509702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0400 519 Coils Coil 154 181 - -
Cre10g0400 519 MobiDBLite consensus disorder prediction 311 368 - -
Cre10g0400 519 MobiDBLite consensus disorder prediction 1 34 - -
Cre10g0400 519 MobiDBLite consensus disorder prediction 128 146 - -
Cre10g0400 519 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g0400 519 PRINTS Heat shock factor (HSF) domain signature 36 59 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g0400 519 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g0400 519 Gene3D - 28 126 IPR036388 -
Cre10g0400 519 FunFam Heat shock transcription factor 1 29 126 - -
Cre10g0400 519 SUPERFAMILY Winged helix DNA-binding domain 32 125 IPR036390 -
Cre10g0400 519 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 355 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Cre10g0400 519 SMART hsfneu3 32 125 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g0400 519 MobiDBLite consensus disorder prediction 11 34 - -
Cre10g0400 519 ProSitePatterns HSF-type DNA-binding domain signature. 75 99 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g0400 519 MobiDBLite consensus disorder prediction 124 146 - -
Cre10g0400 519 MobiDBLite consensus disorder prediction 311 387 - -
Cre10g0400 519 Pfam HSF-type DNA-binding 36 125 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0400 K09419 - - csv:101207437 922.154
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2132 Cre-Chr2:34871966 Cre10g0400 Cre-Chr10:2841037 2.80E-48 dispersed
Cre03g0980 Cre-Chr3:8655234 Cre10g0400 Cre-Chr10:2841037 1.60E-49 dispersed
Cre05g0397 Cre-Chr5:3611546 Cre10g0400 Cre-Chr10:2841037 7.10E-53 dispersed
Cre06g1660 Cre-Chr6:13171880 Cre10g0400 Cre-Chr10:2841037 6.10E-40 dispersed
Cre07g0928 Cre-Chr7:8966675 Cre10g0400 Cre-Chr10:2841037 6.10E-54 dispersed
Cre08g1547 Cre-Chr8:28120891 Cre10g0400 Cre-Chr10:2841037 1.00E-39 dispersed
Cre08g1648 Cre-Chr8:28988173 Cre10g0400 Cre-Chr10:2841037 2.60E-56 dispersed
Cre09g0695 Cre-Chr9:6667133 Cre10g0400 Cre-Chr10:2841037 1.80E-60 dispersed
Cre09g2219 Cre-Chr9:41352096 Cre10g0400 Cre-Chr10:2841037 7.40E-39 dispersed
Cre10g0400 Cre-Chr10:2841037 Cre11g0666 Cre-Chr11:3731737 2.10E-43 dispersed
Cre10g0400 Cre-Chr10:2841037 Cre05g0597 Cre-Chr5:5302740 1.80E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g705 Blo02g00985 . Bda06g01262 Bda08g00638 . . . . Cmo06g00645 Cmo16g01225 . . . . Sed10g1395 Cpe14g00974 . Bhi11g00015 Tan08g0173 Cmetu05g1605 . . Mch10g1679 . Cla10g00139 Cam10g0138 Cec10g0148 Cco10g0148 Clacu10g0142 Cmu10g0989 Cre10g0400 . . . . Lsi07g01178 . . Cme06g02455 . . . . . . Bma05g00705 . . . . Cma06g00639 Cma16g01175 Car06g00570 Car16g01108 . . . . . . . . . . . . . . . . . Csa03g00150 Chy06g02159 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0597 . 37 237 HSF AT4G17750 59.6 1.9e-62 237.3
Cre09g0695 . 57 297 HSF AT4G17750 51.4 1.8e-60 230.7
Cre08g1648 . 42 242 HSF AT4G17750 55.0 1.7e-58 224.2
Cre03g0980 . 13 192 HSF AT4G17750 50.8 7.0e-44 175.6
Cre08g1547 . 14 118 HSF AT4G17750 69.5 3.9e-39 159.8
Cre09g2219 . 368 490 HSF AT4G17750 61.8 3.9e-39 159.8
Cre05g2189 . 20 118 HSF AT4G17750 69.7 2.6e-38 157.1
Cre05g0597 . 38 242 HSF AT5G16820 57.0 5.1e-60 229.2
Cre07g0420 . 41 258 HSF AT5G16820 52.2 9.7e-59 224.9
Cre09g0695 . 58 269 HSF AT5G16820 54.2 2.4e-57 220.3
Cre08g1648 . 43 253 HSF AT5G16820 51.1 3.8e-55 213.0
Cre04g2010 . 40 222 HSF AT5G16820 50.3 5.7e-43 172.6
Cre06g1660 . 10 176 HSF AT5G16820 51.6 6.3e-42 169.1
Cre10g0400 . 13 515 HSF AT1G32330 53.0 3.1e-121 432.6
Cre05g0597 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cre09g0695 . 46 265 HSF AT1G32330 51.8 6.3e-58 222.2
Cre08g1648 . 31 223 HSF AT1G32330 54.6 3.8e-55 213.0
Cre08g1547 . 20 117 HSF AT1G32330 72.4 3.3e-38 156.8
Cre07g0420 . 41 262 HSF AT3G02990 52.2 9.1e-62 235.0
Cre05g0597 . 38 241 HSF AT3G02990 57.6 2.7e-61 233.4
Cre09g0695 . 58 280 HSF AT3G02990 52.2 1.2e-58 224.6
Cre08g1648 . 43 242 HSF AT3G02990 51.7 4.9e-55 212.6
Cre06g1660 . 10 172 HSF AT3G02990 50.3 4.0e-41 166.4
Cre05g0597 . 25 298 HSF AT2G26150 50.5 3.3e-69 259.2
Cre09g0695 . 46 264 HSF AT2G26150 54.5 2.5e-64 243.0
Cre10g0400 . 8 243 HSF AT2G26150 55.7 3.3e-61 232.6
Cre03g0980 . 5 156 HSF AT2G26150 52.0 1.1e-40 164.5
Cre02g2132 . 2 189 HSF AT4G18880 52.7 9.6e-52 201.4
Cre05g0397 . 6 353 HSF AT4G13980 56.9 1.6e-103 373.6
Cre05g0597 . 26 218 HSF AT5G43840 54.4 1.7e-55 213.4
Cre08g1648 . 31 234 HSF AT5G43840 50.5 1.2e-45 180.6
Cre09g0695 . 46 382 HSF AT3G22830 53.5 4.3e-92 335.5
Cre07g0420 . 16 350 HSF AT3G22830 50.9 2.1e-86 316.6
Cre08g1648 . 31 253 HSF AT3G22830 54.1 1.7e-64 243.8
Cre10g0400 . 29 242 HSF AT3G22830 58.9 1.2e-62 237.7
Cre09g0695 . 45 357 HSF AT3G51910 51.3 1.6e-71 266.5
Cre07g0420 . 26 322 HSF AT3G51910 52.5 2.0e-69 259.6
Cre08g1648 . 31 223 HSF AT3G51910 56.0 4.1e-54 208.8
Cre08g1648 . 31 230 HSF AT3G63350 52.5 2.8e-50 196.1
Cre02g2132 . 5 140 HSF AT3G63350 56.6 5.5e-38 155.2
Cre09g0695 . 59 251 HSF AT1G67970 50.3 4.0e-44 176.0
Cre04g1306 . 2 296 HSF AT4G36990 52.0 2.2e-71 266.2
Cre08g1547 . 17 115 HSF AT5G62020 67.7 2.0e-38 156.8
Cre09g2219 . 391 712 HSF AT4G11660 51.8 2.3e-79 293.1
Cre08g1547 . 16 121 HSF AT4G11660 71.7 4.1e-44 176.0
Cre04g1306 . 2 107 HSF AT4G11660 71.7 3.8e-42 169.5
Cre03g1504 . 20 119 HSF AT4G11660 68.0 1.1e-38 157.9
Cre10g0400 . 33 126 HSF AT4G11660 69.1 1.8e-36 150.6
Cre04g0452 . 30 237 HSF AT2G41690 53.7 1.6e-49 193.4
Cre10g1708 . 14 222 HSF AT2G41690 55.3 1.1e-47 187.2
Cre08g1547 . 9 373 HSF AT1G46264 52.2 8.5e-89 324.3
Cre05g2189 . 1 238 HSF AT1G46264 63.8 2.2e-81 299.7
Cre03g1504 . 19 200 HSF AT1G46264 51.9 3.2e-51 199.5
Cre10g0400 . 33 138 HSF AT1G46264 73.6 3.9e-41 166.0
Cre10g1708 . 21 118 HSF AT1G46264 69.4 5.8e-37 152.1
Cre02g2132 . 5 105 HSF AT1G46264 67.3 7.6e-37 151.8
Cre05g0597 . 37 237 HSF AT4G17750 59.6 1.9e-62 237.3
Cre09g0695 . 57 297 HSF AT4G17750 51.4 1.8e-60 230.7
Cre08g1648 . 42 242 HSF AT4G17750 55.0 1.7e-58 224.2
Cre03g0980 . 13 192 HSF AT4G17750 50.8 7.0e-44 175.6
Cre08g1547 . 14 118 HSF AT4G17750 69.5 3.9e-39 159.8
Cre09g2219 . 368 490 HSF AT4G17750 61.8 3.9e-39 159.8
Cre05g2189 . 20 118 HSF AT4G17750 69.7 2.6e-38 157.1
Cre05g0597 . 38 242 HSF AT5G16820 57.0 5.1e-60 229.2
Cre07g0420 . 41 258 HSF AT5G16820 52.2 9.7e-59 224.9
Cre09g0695 . 58 269 HSF AT5G16820 54.2 2.4e-57 220.3
Cre08g1648 . 43 253 HSF AT5G16820 51.1 3.8e-55 213.0
Cre04g2010 . 40 222 HSF AT5G16820 50.3 5.7e-43 172.6
Cre06g1660 . 10 176 HSF AT5G16820 51.6 6.3e-42 169.1
Cre10g0400 . 13 515 HSF AT1G32330 53.0 3.1e-121 432.6
Cre05g0597 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cre09g0695 . 46 265 HSF AT1G32330 51.8 6.3e-58 222.2
Cre08g1648 . 31 223 HSF AT1G32330 54.6 3.8e-55 213.0
Cre08g1547 . 20 117 HSF AT1G32330 72.4 3.3e-38 156.8
Cre07g0420 . 41 262 HSF AT3G02990 52.2 9.1e-62 235.0
Cre05g0597 . 38 241 HSF AT3G02990 57.6 2.7e-61 233.4
Cre09g0695 . 58 280 HSF AT3G02990 52.2 1.2e-58 224.6
Cre08g1648 . 43 242 HSF AT3G02990 51.7 4.9e-55 212.6
Cre06g1660 . 10 172 HSF AT3G02990 50.3 4.0e-41 166.4
Cre05g0597 . 25 298 HSF AT2G26150 50.5 3.3e-69 259.2
Cre09g0695 . 46 264 HSF AT2G26150 54.5 2.5e-64 243.0
Cre10g0400 . 8 243 HSF AT2G26150 55.7 3.3e-61 232.6
Cre03g0980 . 5 156 HSF AT2G26150 52.0 1.1e-40 164.5
Cre02g2132 . 2 189 HSF AT4G18880 52.7 9.6e-52 201.4
Cre05g0397 . 6 353 HSF AT4G13980 56.9 1.6e-103 373.6
Cre05g0597 . 26 218 HSF AT5G43840 54.4 1.7e-55 213.4
Cre08g1648 . 31 234 HSF AT5G43840 50.5 1.2e-45 180.6
Cre09g0695 . 46 382 HSF AT3G22830 53.5 4.3e-92 335.5
Cre07g0420 . 16 350 HSF AT3G22830 50.9 2.1e-86 316.6
Cre08g1648 . 31 253 HSF AT3G22830 54.1 1.7e-64 243.8
Cre10g0400 . 29 242 HSF AT3G22830 58.9 1.2e-62 237.7
Cre09g0695 . 45 357 HSF AT3G51910 51.3 1.6e-71 266.5
Cre07g0420 . 26 322 HSF AT3G51910 52.5 2.0e-69 259.6
Cre08g1648 . 31 223 HSF AT3G51910 56.0 4.1e-54 208.8
Cre08g1648 . 31 230 HSF AT3G63350 52.5 2.8e-50 196.1
Cre02g2132 . 5 140 HSF AT3G63350 56.6 5.5e-38 155.2
Cre09g0695 . 59 251 HSF AT1G67970 50.3 4.0e-44 176.0
Cre04g1306 . 2 296 HSF AT4G36990 52.0 2.2e-71 266.2
Cre08g1547 . 17 115 HSF AT5G62020 67.7 2.0e-38 156.8
Cre09g2219 . 391 712 HSF AT4G11660 51.8 2.3e-79 293.1
Cre08g1547 . 16 121 HSF AT4G11660 71.7 4.1e-44 176.0
Cre04g1306 . 2 107 HSF AT4G11660 71.7 3.8e-42 169.5
Cre03g1504 . 20 119 HSF AT4G11660 68.0 1.1e-38 157.9
Cre10g0400 . 33 126 HSF AT4G11660 69.1 1.8e-36 150.6
Cre04g0452 . 30 237 HSF AT2G41690 53.7 1.6e-49 193.4
Cre10g1708 . 14 222 HSF AT2G41690 55.3 1.1e-47 187.2
Cre08g1547 . 9 373 HSF AT1G46264 52.2 8.5e-89 324.3
Cre05g2189 . 1 238 HSF AT1G46264 63.8 2.2e-81 299.7
Cre03g1504 . 19 200 HSF AT1G46264 51.9 3.2e-51 199.5
Cre10g0400 . 33 138 HSF AT1G46264 73.6 3.9e-41 166.0
Cre10g1708 . 21 118 HSF AT1G46264 69.4 5.8e-37 152.1
Cre02g2132 . 5 105 HSF AT1G46264 67.3 7.6e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004373 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54472 PF00447 HSF_DNA-bind 2.80E-33 CL0123 Cre TF