Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0401 ATGGTTTCGAGGTCTTATTCTAACTTGTTAGAGCTTGCTTCTGGTGGTTGTTCTCCAACTTTTGGCCTTGGTCGAGAGAAGAAGAGGCTTCCTAGAGTGGCCACTGTGGCTGGAGTCTTGTCTGAGCTTGATGACGATAGCTGCAACAGCACTGGCTCGGATGCCCCTTCGTCAGTAGCACAAGACCGGATGATCATTGTTGGGAATCAGCTCCCTATTCGAGCGAATCGAGACGAGAATGGAGATTGGGGGTTTAGTATGGATGAGGATTCACTTCTTTTACAGCTTAAAGATGGACTTGGAGAAGATGTGGAAGTGATTTATATTGGTTGTCTTAGAGAGGAGGTCGATCCAAGGGAGCAAGATGATGTTGCACAAATTCTTTTGGACCGATTCAAGTGTGTCCCGACGTTCCTTCCTCCCGAGCTTTTTACTAAATTTTATCATGGATTCTGCAAGCAACATTTATGGCCACTGTTTCACTATATGCTTCCCCTGTCACCGGATCTTGGTGGCAGATTTGATCGGTCTCTTTGGCAAGCATATCTTTCGGTGAATAAGATATTTGCAGATAAAGTTATGGAAGTGATTAGTCCTGATGACGACTTTGTTTGGGTTCATGATTACCATTTGATGGTTTTGCCAACATTTTTGAGGAAGAGGTTTAACAGGGTGAAGCTTGGATTCTTCCTACACAGTCCATTTCCTTCATCTGAGATTTATCGGACCCTTCCCGTTAGAGACGAACTTCTTCGGGCACTATTGAACTCTGACCTTATTGGCTTCCACACGTTTGATTATGCTAGGCATTTTTTATCTTGCTGCAGCAGAATGCTTGGTCTGTCTTATCAATCTAAGCGAGGTTACATCGGGCTTGAATACTATGGTCGTACTGTGAGCATCAAGATTCTTCCTGTCGGTATTCATATAGGCCAGCTCCAAAATGTTTTGAATCTCCCCGAGACTGTAGCCAAAGTCGCAGAATTGCAAGAGCGGTTCAAGGGTCAAACTGTTTTGCTTGGGGTTGATGATATGGACATATTTAAGGGGATCAGCCTGAAACTTTTGGCATTTGAACAATTGCTCCGACAACATCCTGAGAGATGGGGCAAAGCTGTGTTAGTACAGATTGCGAACCCTGCAAGAGGCAGAGGGAAGGATGTGCAGGAGGTTGTGGCTGAAACCACAGCGACAGTGGATAGAATTAATACAACATTTAAAAGGCCAGGATATGAGCCTGTGGTTTTGATAAATACTCCCTTGCAGTTTTACGAGCGAATTGCTTACTATGCAATTGCTGAGTGCTGCCTTGTTACTGCAGTGAGAGATGGGATGAATCTTATACCTTATGAGTATATTATATGTCGGCAAGGCAATGAGAAGCTTGACGATGTTCTCGGGCTAAATCCTTCAACTGCAAAGAAGAGCATGTTAGTGTTGTCTGAGTTTATTGGGTGTTCCCCATCCCTCAGTGGAGCTATTCGGGTTAACCCATGGAATATTGAAGCTGTCACCGAGGCAATGGATTCTGCCCTGGTAATCCCTGAGGCAGAAAAGCAATTGCGACATGAAAAGCATTATAGGTACGTTAGTACGCATGATGTTGCATATTGGGCACGCAGCTTTTTGCAGGATCTGGGCAGGGCCTGTAGAGACCATTCAATGAGGAGGTGCTGGGGCATAGGTTTCGGTTTAGGATTTCGAGTTATTGCCCTGGATCCAGATTTTAGGAAGCTTTCAGTTGATCATATTGTTTCAGTGTATAAGAGAACCTGCCACCGAGCAATTTTGTTAGATTATGATGGTATCATGATGCTTCCTGGATCAATTAGCATGAATCCAACTTCAGAAGCCCTTGGAATCTTGAACAACTTGTGTAAAGATCCTAAAAATGTTGTGTTCCTTGTTAGCGGAAAGGACCGAAAAACTCTGACCGAATGGTTTTCACCGTGCGAAAAGCTTGGACTAGCTGCAGAACATGGTTTTTATCTAAGGCCAAATCATACTGCAGACTGGGAGACATGTGTAGCTGTGACGGATTTTGACTGGAAACAGATTGCAGAACCCGTTATGCAATTGTATACCGAGACAACTGATGGCTCTACAATCGAAACTAAAGAGAGTGCGCTTGTTTGGAACTACCTTTACGCAGATCCTGATTTCGGGTCGTGCCAGGCCAAGGAACTTTTAGATCACCTGGAAAGTGTTCTTGCCAATGAGCCAGTTTCTGTCAAGAGTGGCCAACACATTGTAGAAGTCAAACCTCAGGGTGTAAACAAGGGCATTGTAGCAGAATATCTCTTGCAAACAATGAGGGAGAGGGGAATGCTTCCCGATTTCGTTCTATGCATTGGAGACGACAGGTCAGACGAGGACATGTTCGAGGTGATAATGAATGCAAAAGCCACCCTTTCTCCCGGTGCCGAAGTATTCGGTTGTACCGTTGGCCAGAAACCAAGCAAGGCCAGGTATTACTTAGAAGACACACACGAAATCTTGAGAATGTTACAAGGTCTTACCCATGCGTCCGAGCACGCGACTAGAGCTGCTCTGCAGACGACAGCTCGTAGAGTGCAACGAGCAGCGCGCGCGATCAACCTCCTTGTGGGACGGCGTGCGACAGAGGCTCGACAACGACGCGATTCCGGCGTGCAGTCACAAGCGGCGTCGAATTCTCCGGCGGATCTAGTCAAGCAGCAGCGTGCGATTCTCTCGACGCCACAACCTGCATCCACGACGACGGACAGATTGTCGACGGCGCGAACACCTCCTTGCCCTTTCGGAATTGTGCTTTTGCTTCCCTTGATGGATTCTAGTGTTACTATCGCGACTGTAATTCTCAGTATCAGCTTGATTTTGAGCCGTGTTCTTTACGTTATATATTGGAGTGGTAGACCACTTCGAAACAAAAGCTTGGGACCTGTTAGTACCCTCATTGTTTTAGGCTCAGGAGGTCACACGGCGGAGATGCTCAATGTGTTGTCTGTGCTGCAGAAAGACTTGTTTTCTCCAAGATTCTACATTGCTGCTGCTACTGATAACATGAGTCTTCAAAAAGCTCGTACGTATGAGATCCAACTGGCTGATAAGACTGGGGCTGAGGTAGACAAGATTGCACAGTTTATGCCGATCTACAGAAGTAGGGAAGTAGGACAATCATATTTCACTTCTGTTTGGACAACTTTAATTGCCACGTTGCATGCACTCTGGCTAATGCTCAAAATTAGACCTCAAGTGATTCTCTGCAATGGCCCTGGTACTTGTATCCCACTATGCGTAATTGCATTCATATTCAAGGTTCTGGGAATTAGATGGTCTTCAATTTTTTATGTGGAAAGCATTGCAAGAGTGAAGAGATTATCATTAAGTGGCTTGATTTTATACAAGTTATACATGGCTGATCAGTTCTTTGTGCAATGGCCACAACTTCAAAGGATGTATCCCCGCGCTCACTACGTCGGTTGTCTCATGTAG 3474 45.42 MVSRSYSNLLELASGGCSPTFGLGREKKRLPRVATVAGVLSELDDDSCNSTGSDAPSSVAQDRMIIVGNQLPIRANRDENGDWGFSMDEDSLLLQLKDGLGEDVEVIYIGCLREEVDPREQDDVAQILLDRFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQNVLNLPETVAKVAELQERFKGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKAVLVQIANPARGRGKDVQEVVAETTATVDRINTTFKRPGYEPVVLINTPLQFYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDDVLGLNPSTAKKSMLVLSEFIGCSPSLSGAIRVNPWNIEAVTEAMDSALVIPEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPDFRKLSVDHIVSVYKRTCHRAILLDYDGIMMLPGSISMNPTSEALGILNNLCKDPKNVVFLVSGKDRKTLTEWFSPCEKLGLAAEHGFYLRPNHTADWETCVAVTDFDWKQIAEPVMQLYTETTDGSTIETKESALVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGIVAEYLLQTMRERGMLPDFVLCIGDDRSDEDMFEVIMNAKATLSPGAEVFGCTVGQKPSKARYYLEDTHEILRMLQGLTHASEHATRAALQTTARRVQRAARAINLLVGRRATEARQRRDSGVQSQAASNSPADLVKQQRAILSTPQPASTTTDRLSTARTPPCPFGIVLLLPLMDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVSTLIVLGSGGHTAEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYEIQLADKTGAEVDKIAQFMPIYRSREVGQSYFTSVWTTLIATLHALWLMLKIRPQVILCNGPGTCIPLCVIAFIFKVLGIRWSSIFYVESIARVKRLSLSGLILYKLYMADQFFVQWPQLQRMYPRAHYVGCLM 1157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2861517 2871249 + CrPI670011_10g004010.1 Cre10g0401 509703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0401 1157 Gene3D - 723 855 IPR023214 -
Cre10g0401 1157 Gene3D - 593 710 IPR023214 -
Cre10g0401 1157 MobiDBLite consensus disorder prediction 876 895 - -
Cre10g0401 1157 Pfam Oligosaccharide biosynthesis protein Alg14 like 978 1156 IPR013969 GO:0006488(InterPro)
Cre10g0401 1157 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cre10g0401 1157 Gene3D Glycogen Phosphorylase B; 977 1157 - -
Cre10g0401 1157 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 56 314 - -
Cre10g0401 1157 FunFam UDP-N-acetylglucosamine transferase subunit ALG14 isogeny 977 1157 - -
Cre10g0401 1157 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 593 710 - -
Cre10g0401 1157 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 550 - -
Cre10g0401 1157 CDD GT20_TPS 63 546 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cre10g0401 1157 Pfam Trehalose-phosphatase 597 829 IPR003337 GO:0005992(InterPro)
Cre10g0401 1157 SUPERFAMILY HAD-like 594 839 IPR036412 -
Cre10g0401 1157 NCBIfam trehalose-phosphatase 593 840 IPR003337 GO:0005992(InterPro)
Cre10g0401 1157 MobiDBLite consensus disorder prediction 880 895 - -
Cre10g0401 1157 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 27 842 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cre10g0401 1157 Gene3D Glycogen Phosphorylase B; 56 314 - -
Cre10g0401 1157 NCBIfam HAD-IIB family hydrolase 596 798 IPR006379 -
Cre10g0401 1157 CDD HAD_TPP 595 831 - -
Cre10g0401 1157 Gene3D Glycogen Phosphorylase B; 315 531 - -
Cre10g0401 1157 FunFam Alpha,alpha-trehalose-phosphate synthase 316 531 - -
Cre10g0401 1157 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 723 852 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0996 Cre-Chr3:8794596 Cre10g0401 Cre-Chr10:2861517 4.90E-123 dispersed
Cre04g2005 Cre-Chr4:37399977 Cre10g0401 Cre-Chr10:2861517 0.00E+00 dispersed
Cre05g2685 Cre-Chr5:37798535 Cre10g0401 Cre-Chr10:2861517 0.00E+00 dispersed
Cre06g2555 Cre-Chr6:33151282 Cre10g0401 Cre-Chr10:2861517 0.00E+00 dispersed
Cre10g0401 Cre-Chr10:2861517 Cre11g2131 Cre-Chr11:32983854 5.80E-126 dispersed
Cre10g0401 Cre-Chr10:2861517 Cre07g0616 Cre-Chr7:3955023 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0401 K16055 - csv:101207192 1687.93