Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0405 ATGGCGACCCTCGAATCTGCAATTCCAATAATCTCTCACTACATTTCTTCTTCTTCCTCCTCAAAATTATGCTTCAATAAACTTCCCTCCGCCATTAAGCTTCGAATTTCCTTCTCTTCCCCTCTCCTTTCCCTCAATCCCACAACCCCCATTTCCCCTCTCTCCCTCAACCCATCAGGAAATCGCGGCGGCCGACTATGTTCTGCAGTGCAAGAGGTTAGTTTGGAGGAAGCTTCCGAGCAAAATGAGGATGTGAATCAGAAGAAGAAGTTATACATCTTCAATTTACCTTGGTCTTTCTCCGTCGTTGACATTAAGGAGCTCTTTGGACAATGCGGAACTGTCACTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCACAAATTTGACTCTCAAGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCTCCTCCAAAGCCTCCAGGTCCCCCTCCTGGAGAGACAGTGAATAAACTGTATGTATCAAATCTTGCATGGAAAGTGAGATCAAGCAATCTCAGAGAGTTCTTCTCTGAAAACTTTAACCCAGTTGCGGCCAGGGTTGTCTTCGATAGCCCCTCTGGAAGGTCTGCTGGATATGGTTTTGTTTCTTTTGCTACTCGAGAGGAGGCTGAAACTGCACTTTCTTCGTTGGAGGGGAAGGAATTGATGGGAAGACCCCTTCGCCTGAAATTCAGTGAAAGAAATGTCAACGAATCAGAAACCCCAAAAGAAGACGTTTCTGAAAGCCAATCTGAAGAATCGTAG 852 44.48 MATLESAIPIISHYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLNPSGNRGGRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDVSESQSEES 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2893206 2895639 - CrPI670011_10g004050.1 Cre10g0405 509707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0405 283 SUPERFAMILY RNA-binding domain, RBD 170 265 IPR035979 GO:0003676(InterPro)
Cre10g0405 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723(InterPro)
Cre10g0405 283 SUPERFAMILY RNA-binding domain, RBD 80 176 IPR035979 GO:0003676(InterPro)
Cre10g0405 283 PANTHER OS02G0815200 PROTEIN 45 260 IPR050502 GO:0003729(PANTHER)|GO:0009535(PANTHER)|GO:1901259(PANTHER)
Cre10g0405 283 SMART rrm1_1 90 162 IPR000504 GO:0003723(InterPro)
Cre10g0405 283 SMART rrm1_1 186 259 IPR000504 GO:0003723(InterPro)
Cre10g0405 283 Gene3D - 169 275 IPR012677 -
Cre10g0405 283 Gene3D - 63 168 IPR012677 -
Cre10g0405 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 263 IPR000504 GO:0003723(InterPro)
Cre10g0405 283 MobiDBLite consensus disorder prediction 257 283 - -
Cre10g0405 283 MobiDBLite consensus disorder prediction 257 277 - -
Cre10g0405 283 Pfam RNA recognition motif 187 257 IPR000504 GO:0003723(InterPro)
Cre10g0405 283 Pfam RNA recognition motif 91 160 IPR000504 GO:0003723(InterPro)
Cre10g0405 283 CDD RRM_SF 91 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0405 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1838 Cre-Chr7:33757881 Cre10g0405 Cre-Chr10:2893206 3.60E-07 dispersed
Cre10g0405 Cre-Chr10:2893206 Cre10g1938 Cre-Chr10:34052736 2.40E-33 dispersed
Cre10g0405 Cre-Chr10:2893206 Cre01g1515 Cre-Chr1:28360031 3.40E-11 transposed
Cre10g0405 Cre-Chr10:2893206 Cre07g1807 Cre-Chr7:33455996 3.40E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g678 . . . . . . . . . Cmo16g01221 . . . . Sed02g0123 Cpe14g00970 . Bhi11g00026 Tan01g2201 Cmetu06g1790 . . Mch10g1673 . Cla10g00148 Cam10g0144 Cec10g0153 Cco10g0153 Clacu10g0147 Cmu10g0994 Cre10g0405 . . . . Lsi07g01183 . . Cme06g02461 Blo03g00866 . . . Bpe08g00829 . . . . . . . Cma16g01171 . Car16g01104 . . . . . . . . . . . . . . . . . Csa03g00157 Chy06g02152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012628 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 29