Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g0420 | ATGACGGATTATCGTTTGTCGACGATGAATCTCTGGACTGACGAAAACGCGTCGGTGATGGACGCTTTCATGAACTCCGATCTGTCCTCTTACTGGGCTCCATCGGCCGCCTCCTCTCACTCTCTTCACCACCCACCGCCGCCTCAGTCCTCCGCCTCCACCTCCACTCCCCCACCGGACCCGCCCAAGTCCCTCCCTGTTTTCAATCAGGAGACTCTGCAGCAGCGGCTCCAGGCGCTGATCGACGGCGCTAGGGAGAGTTGGACTTACGCGATTTTCTGGCAGTCGTCCTATGATTATTCCGGTGCGTCGGTTTTGGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGAAAAGCGAAAATGGTGTCGTCGGCGGCAGAGCAGGCTCATCGGAAGAAGGTTTTACGGGAGCTTAACTCTTTAATTTCTGGCTCCGCTGCCGGACCGGACGATGCGGTAGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCTTTTGATAATGGAGTTTGGTTACCGAGTCAGGCGTTTTACAACTCGACGCCGATTTGGGTTTCTGGCGCCGATCGGCTGTCGGCGTCTGCCTGTGAACGGGCCAGACAGGGGAGGGTTTTTGGGTTACAGACGATGGTCTGTATTCCATCGCCAAACGGAGTTGTGGAAATGGGTTCGACGGAATTGATTCATCGAACGTCGGATTTGATGAACAAGGTCAAGATTCTGTTCAATTTCAACAATCTCGAAACGAGTTCTTGGATATCGGGAACCACCGCCGCCGATGAAGGGGAAAACGACCCGTCGTCGATGTGGATCAGTGAGCCGTCGAGTACTATCGAGATGAAGGATTCCATTACCACCACCGTCCCTTCCGGCAACGTCCCGGCAAAGCCAATCCATTCGGAAAATCCCAGTTCCAGCAGCTTAACGGAAAATATCAGCGCGATCCAACAACCATCCCATCAAAAACAAAGCCAAAGCTTCTTAAATTTCTCCGATTACGGCTTCGAATCAAATCCCTCAAAGAACACCACCGCCGCCGCAACAACCACCACCGCCACCCCATCATTCAAGCCGGAATCCGGCGGGATGCTGAATTTCGGCAACGGAAACCTCTTCTCTAGCCATTCACAGTATGTAACAAACGAACAGAACGAGAAAAAGAGATCCCCTGCTTCTCGGAGTAGCAACGACGAAGGGATCCTCTCTTTCACCTCTGGCGTGATCTTACCCTCCTCCGGTAAGGTAAAATCCGGGGACTCAGACCACTCAGATCTCGAAGCATCGGTGATCAGAGAAGTGGATAGCTGTACAAAATCATTAGAACCCGAAAAACGTCCAAGAAAAAGAGGTAGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCACGTAGAAGCAGAGAGACAACGGCGAGAGAAGTTGAACCAGAAATTCTACGCTCTCCGAGCTGTAGTTCCAAACGTATCTAAAATGGACAAGGCCTCACTACTGGGAGACGCGGTTTCTTACATCAACGAGCTCAAATCAAAGCTCCAAATAGCGGAAACGGAGAAAACAGAGATGGGAAAACATTTGGAATTGCTGAAGAAGGAGATGGGAGGGAAAGATTTCGGGAATTACCCGAACCCAAATGATGAAGATCTGAAAATAGGGAAAAGAAAGGTAATGGATATGGAGATCGAAGTTAAAATCATGGGTTGGGATGCGATGATAAGGATTCAAAGCAGCAAGAAAAATCATCCGGCGGCAAGGCTGATGGCGGCGTTTAAGGATTTAGATTTAGAAATGCTTCATGCGAGTGTTTCTGTAGTGAATGATTTGATGATTCAACAGGCAACGGTGAAGATGGGGAGCAGATTTTACACACAGGAGCAGCTTAAAATGGCTCTCGTCGCCCGAGTCGGTGGCGGCGGCGGCGGCGGCCATGGAATTATGTAA | 1971 | 50.33 | MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLPVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGASVLGWGDGYYKGEEDKGKGKAKMVSSAAEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFDNGVWLPSQAFYNSTPIWVSGADRLSASACERARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAADEGENDPSSMWISEPSSTIEMKDSITTTVPSGNVPAKPIHSENPSSSSLTENISAIQQPSHQKQSQSFLNFSDYGFESNPSKNTTAAATTTTATPSFKPESGGMLNFGNGNLFSSHSQYVTNEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSLEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIAETEKTEMGKHLELLKKEMGGKDFGNYPNPNDEDLKIGKRKVMDMEIEVKIMGWDAMIRIQSSKKNHPAARLMAAFKDLDLEMLHASVSVVNDLMIQQATVKMGSRFYTQEQLKMALVARVGGGGGGGHGIM | 656 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3081178 | 3083148 | + | CrPI670011_10g004200.1 | Cre10g0420 | 509722 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g0420 | 656 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 469 | 518 | IPR011598 | GO:0046983(InterPro) | |
Cre10g0420 | 656 | MobiDBLite | consensus disorder prediction | 377 | 396 | - | - | |
Cre10g0420 | 656 | MobiDBLite | consensus disorder prediction | 296 | 319 | - | - | |
Cre10g0420 | 656 | Gene3D | - | 468 | 545 | IPR036638 | GO:0046983(InterPro) | |
Cre10g0420 | 656 | FunFam | Transcription factor bHLH13 | 462 | 536 | - | - | |
Cre10g0420 | 656 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 472 | 539 | IPR036638 | GO:0046983(InterPro) | |
Cre10g0420 | 656 | Coils | Coil | 515 | 542 | - | - | |
Cre10g0420 | 656 | Pfam | Helix-loop-helix DNA-binding domain | 473 | 519 | IPR011598 | GO:0046983(InterPro) | |
Cre10g0420 | 656 | MobiDBLite | consensus disorder prediction | 350 | 410 | - | - | |
Cre10g0420 | 656 | SMART | finulus | 475 | 524 | IPR011598 | GO:0046983(InterPro) | |
Cre10g0420 | 656 | PANTHER | MYC | 56 | 644 | IPR045084 | GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER) | |
Cre10g0420 | 656 | MobiDBLite | consensus disorder prediction | 36 | 67 | - | - | |
Cre10g0420 | 656 | MobiDBLite | consensus disorder prediction | 50 | 65 | - | - | |
Cre10g0420 | 656 | MobiDBLite | consensus disorder prediction | 350 | 369 | - | - | |
Cre10g0420 | 656 | CDD | bHLH_AtAIB_like | 466 | 542 | - | - | |
Cre10g0420 | 656 | MobiDBLite | consensus disorder prediction | 444 | 479 | - | - | |
Cre10g0420 | 656 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 73 | 253 | IPR025610 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre10g0420 | Cre-Chr10:3081178 | Cre11g1598 | Cre-Chr11:26382814 | 1.10E-09 | dispersed | |
Cre05g0149 | Cre-Chr5:1588627 | Cre10g0420 | Cre-Chr10:3081178 | 3.20E-62 | transposed | |
Cre06g1139 | Cre-Chr6:5260463 | Cre10g0420 | Cre-Chr10:3081178 | 1.90E-19 | transposed | |
Cre07g0393 | Cre-Chr7:1651226 | Cre10g0420 | Cre-Chr10:3081178 | 1.70E-18 | transposed | |
Cre07g0444 | Cre-Chr7:2204212 | Cre10g0420 | Cre-Chr10:3081178 | 2.50E-41 | transposed | |
Cre10g0343 | Cre-Chr10:2210859 | Cre10g0420 | Cre-Chr10:3081178 | 7.90E-42 | transposed | |
Cre11g1447 | Cre-Chr11:21715853 | Cre10g0420 | Cre-Chr10:3081178 | 3.60E-07 | transposed | |
Cre10g0420 | Cre-Chr10:3081178 | Cre09g1145 | Cre-Chr9:12527079 | 5.10E-212 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54474 | PF14215 | bHLH-MYC_N | 9.00E-52 | CL0161 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g0420 | K13422 | - | csv:101205372 | 1103.58 |