Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0420 ATGACGGATTATCGTTTGTCGACGATGAATCTCTGGACTGACGAAAACGCGTCGGTGATGGACGCTTTCATGAACTCCGATCTGTCCTCTTACTGGGCTCCATCGGCCGCCTCCTCTCACTCTCTTCACCACCCACCGCCGCCTCAGTCCTCCGCCTCCACCTCCACTCCCCCACCGGACCCGCCCAAGTCCCTCCCTGTTTTCAATCAGGAGACTCTGCAGCAGCGGCTCCAGGCGCTGATCGACGGCGCTAGGGAGAGTTGGACTTACGCGATTTTCTGGCAGTCGTCCTATGATTATTCCGGTGCGTCGGTTTTGGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGAAAAGCGAAAATGGTGTCGTCGGCGGCAGAGCAGGCTCATCGGAAGAAGGTTTTACGGGAGCTTAACTCTTTAATTTCTGGCTCCGCTGCCGGACCGGACGATGCGGTAGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCTTTTGATAATGGAGTTTGGTTACCGAGTCAGGCGTTTTACAACTCGACGCCGATTTGGGTTTCTGGCGCCGATCGGCTGTCGGCGTCTGCCTGTGAACGGGCCAGACAGGGGAGGGTTTTTGGGTTACAGACGATGGTCTGTATTCCATCGCCAAACGGAGTTGTGGAAATGGGTTCGACGGAATTGATTCATCGAACGTCGGATTTGATGAACAAGGTCAAGATTCTGTTCAATTTCAACAATCTCGAAACGAGTTCTTGGATATCGGGAACCACCGCCGCCGATGAAGGGGAAAACGACCCGTCGTCGATGTGGATCAGTGAGCCGTCGAGTACTATCGAGATGAAGGATTCCATTACCACCACCGTCCCTTCCGGCAACGTCCCGGCAAAGCCAATCCATTCGGAAAATCCCAGTTCCAGCAGCTTAACGGAAAATATCAGCGCGATCCAACAACCATCCCATCAAAAACAAAGCCAAAGCTTCTTAAATTTCTCCGATTACGGCTTCGAATCAAATCCCTCAAAGAACACCACCGCCGCCGCAACAACCACCACCGCCACCCCATCATTCAAGCCGGAATCCGGCGGGATGCTGAATTTCGGCAACGGAAACCTCTTCTCTAGCCATTCACAGTATGTAACAAACGAACAGAACGAGAAAAAGAGATCCCCTGCTTCTCGGAGTAGCAACGACGAAGGGATCCTCTCTTTCACCTCTGGCGTGATCTTACCCTCCTCCGGTAAGGTAAAATCCGGGGACTCAGACCACTCAGATCTCGAAGCATCGGTGATCAGAGAAGTGGATAGCTGTACAAAATCATTAGAACCCGAAAAACGTCCAAGAAAAAGAGGTAGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCACGTAGAAGCAGAGAGACAACGGCGAGAGAAGTTGAACCAGAAATTCTACGCTCTCCGAGCTGTAGTTCCAAACGTATCTAAAATGGACAAGGCCTCACTACTGGGAGACGCGGTTTCTTACATCAACGAGCTCAAATCAAAGCTCCAAATAGCGGAAACGGAGAAAACAGAGATGGGAAAACATTTGGAATTGCTGAAGAAGGAGATGGGAGGGAAAGATTTCGGGAATTACCCGAACCCAAATGATGAAGATCTGAAAATAGGGAAAAGAAAGGTAATGGATATGGAGATCGAAGTTAAAATCATGGGTTGGGATGCGATGATAAGGATTCAAAGCAGCAAGAAAAATCATCCGGCGGCAAGGCTGATGGCGGCGTTTAAGGATTTAGATTTAGAAATGCTTCATGCGAGTGTTTCTGTAGTGAATGATTTGATGATTCAACAGGCAACGGTGAAGATGGGGAGCAGATTTTACACACAGGAGCAGCTTAAAATGGCTCTCGTCGCCCGAGTCGGTGGCGGCGGCGGCGGCGGCCATGGAATTATGTAA 1971 50.33 MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLPVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGASVLGWGDGYYKGEEDKGKGKAKMVSSAAEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFDNGVWLPSQAFYNSTPIWVSGADRLSASACERARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAADEGENDPSSMWISEPSSTIEMKDSITTTVPSGNVPAKPIHSENPSSSSLTENISAIQQPSHQKQSQSFLNFSDYGFESNPSKNTTAAATTTTATPSFKPESGGMLNFGNGNLFSSHSQYVTNEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSLEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIAETEKTEMGKHLELLKKEMGGKDFGNYPNPNDEDLKIGKRKVMDMEIEVKIMGWDAMIRIQSSKKNHPAARLMAAFKDLDLEMLHASVSVVNDLMIQQATVKMGSRFYTQEQLKMALVARVGGGGGGGHGIM 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3081178 3083148 + CrPI670011_10g004200.1 Cre10g0420 509722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0420 656 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 469 518 IPR011598 GO:0046983(InterPro)
Cre10g0420 656 MobiDBLite consensus disorder prediction 377 396 - -
Cre10g0420 656 MobiDBLite consensus disorder prediction 296 319 - -
Cre10g0420 656 Gene3D - 468 545 IPR036638 GO:0046983(InterPro)
Cre10g0420 656 FunFam Transcription factor bHLH13 462 536 - -
Cre10g0420 656 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 472 539 IPR036638 GO:0046983(InterPro)
Cre10g0420 656 Coils Coil 515 542 - -
Cre10g0420 656 Pfam Helix-loop-helix DNA-binding domain 473 519 IPR011598 GO:0046983(InterPro)
Cre10g0420 656 MobiDBLite consensus disorder prediction 350 410 - -
Cre10g0420 656 SMART finulus 475 524 IPR011598 GO:0046983(InterPro)
Cre10g0420 656 PANTHER MYC 56 644 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Cre10g0420 656 MobiDBLite consensus disorder prediction 36 67 - -
Cre10g0420 656 MobiDBLite consensus disorder prediction 50 65 - -
Cre10g0420 656 MobiDBLite consensus disorder prediction 350 369 - -
Cre10g0420 656 CDD bHLH_AtAIB_like 466 542 - -
Cre10g0420 656 MobiDBLite consensus disorder prediction 444 479 - -
Cre10g0420 656 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 73 253 IPR025610 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0420 Cre-Chr10:3081178 Cre11g1598 Cre-Chr11:26382814 1.10E-09 dispersed
Cre05g0149 Cre-Chr5:1588627 Cre10g0420 Cre-Chr10:3081178 3.20E-62 transposed
Cre06g1139 Cre-Chr6:5260463 Cre10g0420 Cre-Chr10:3081178 1.90E-19 transposed
Cre07g0393 Cre-Chr7:1651226 Cre10g0420 Cre-Chr10:3081178 1.70E-18 transposed
Cre07g0444 Cre-Chr7:2204212 Cre10g0420 Cre-Chr10:3081178 2.50E-41 transposed
Cre10g0343 Cre-Chr10:2210859 Cre10g0420 Cre-Chr10:3081178 7.90E-42 transposed
Cre11g1447 Cre-Chr11:21715853 Cre10g0420 Cre-Chr10:3081178 3.60E-07 transposed
Cre10g0420 Cre-Chr10:3081178 Cre09g1145 Cre-Chr9:12527079 5.10E-212 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54474 PF14215 bHLH-MYC_N 9.00E-52 CL0161 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0420 K13422 - csv:101205372 1103.58