Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0427 ATGGATTCACGGGAGAGGTCGATGCCTTCTGTTCATCAACATCAGCCACAATCCACTCCCCCCAACAGGATGATCCCCAACGCTTCTTATTCCACTAATTTGCCCAATTCCAACAATACTTCCCCTTTGATCAACCCCAATTCCGCTGCTGCTCAGATGATGTCTTCCGCTTCCCGATTTCCCTTCAACTCCATGATGGGTTCCTCCTCTAAGCCCTCCGAATCTCCCAATGCGGCTTCTTATGATGGATCGCAGTCTGAATTGCGCACTGGTGGCTTTAACATTGATTCTGGGAAGAAGAAGAGAGGCCGTCCCAGGAAGTATTCCCCTGATGGGAACATCGCCTTGGGTTTATCCCCAACCCCCATCACTTCTTCCGCCGTTCCTGGCGATTCCGCCGGCATGAACTCCCTGGATCCTCGCCCTAAGAAGAACAGGGGACGGCCGCCCGGTACAGGGAAGAGGCAGATGGATGCTTTGGGGACTGGTGGTGTTGGCTTTACTCCTCATGTCATTCTTGTGAAACCAGGAGAGGACATTGCCTCAAAAGTTATGGCATTTTCACAGCAGGGGCCACGGACTGTTTGTATTCTCTCTGCCCATGGTGCTGTTTGCAATGTTACACTTCAACCTGCAATGTCAGCTGGTAGTGTGTCATACGAGGGCCGCTATGAAATCATATCTCTATCAGGTTCCTTCTTGATTTCTGACAATAATGGTAATCGGAGTCGAAGTGGTGGTTTAAGTGTGTCTCTAGCAAGTGCAGATGGACAAGTTCTTGGTGGAATTACCAACATGCTAACAGCAGCATCGACAGTTCAGGTTATAGTCGGTAGCTTTCTTGTGGATGGGAAAAAGCTAGGAGCGAGTATACAGAAATCTGGGCCATCTTCTACATCTCCCAATATGTTGAACTTTAATACACCCGTGGGAACAGGCTGCCCATCTGAAGGTGCATCAAATAATTCATCCGATGACAATGGTGGTAGCCCTTTAAGCCGGGGGCCTGGAATGTACACCAATGCCAACCAACCAATGCATAATATGCAGATGTATCAACTATGGGGTAGCCGAAATCAATAA 1083 48.85 MDSRERSMPSVHQHQPQSTPPNRMIPNASYSTNLPNSNNTSPLINPNSAAAQMMSSASRFPFNSMMGSSSKPSESPNAASYDGSQSELRTGGFNIDSGKKKRGRPRKYSPDGNIALGLSPTPITSSAVPGDSAGMNSLDPRPKKNRGRPPGTGKRQMDALGTGGVGFTPHVILVKPGEDIASKVMAFSQQGPRTVCILSAHGAVCNVTLQPAMSAGSVSYEGRYEIISLSGSFLISDNNGNRSRSGGLSVSLASADGQVLGGITNMLTAASTVQVIVGSFLVDGKKLGASIQKSGPSSTSPNMLNFNTPVGTGCPSEGASNNSSDDNGGSPLSRGPGMYTNANQPMHNMQMYQLWGSRNQ 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3144026 3151027 + CrPI670011_10g004270.1 Cre10g0427 509729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0427 360 Gene3D - 169 295 - -
Cre10g0427 360 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 348 IPR039605 GO:0003680(InterPro)
Cre10g0427 360 CDD DUF296 168 280 IPR005175 -
Cre10g0427 360 ProSiteProfiles PPC domain profile profile. 163 302 IPR005175 -
Cre10g0427 360 MobiDBLite consensus disorder prediction 118 132 - -
Cre10g0427 360 SMART AT_hook_2 143 155 IPR017956 GO:0003677(InterPro)
Cre10g0427 360 SMART AT_hook_2 99 111 IPR017956 GO:0003677(InterPro)
Cre10g0427 360 MobiDBLite consensus disorder prediction 1 47 - -
Cre10g0427 360 MobiDBLite consensus disorder prediction 291 345 - -
Cre10g0427 360 MobiDBLite consensus disorder prediction 10 47 - -
Cre10g0427 360 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 280 IPR005175 -
Cre10g0427 360 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 281 - -
Cre10g0427 360 MobiDBLite consensus disorder prediction 62 161 - -
Cre10g0427 360 MobiDBLite consensus disorder prediction 62 92 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2242 Cre-Chr9:41595614 Cre10g0427 Cre-Chr10:3144026 2.60E-46 dispersed
Cre10g0427 Cre-Chr10:3144026 Cre11g2294 Cre-Chr11:34578089 1.90E-46 dispersed
Cre10g0427 Cre-Chr10:3144026 Cre10g0428 Cre-Chr10:3159720 1.50E-11 tandem
Cre02g2493 Cre-Chr2:38194426 Cre10g0427 Cre-Chr10:3144026 8.60E-19 transposed
Cre08g0864 Cre-Chr8:21782933 Cre10g0427 Cre-Chr10:3144026 8.00E-62 transposed
Cre10g0427 Cre-Chr10:3144026 Cre05g0345 Cre-Chr5:3171780 4.60E-13 wgd
Cre10g0427 Cre-Chr10:3144026 Cre09g1154 Cre-Chr9:12747652 2.40E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0427 - - - 0.0