Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0428 ATGGCTGGATTGGATTTAGGGAGTCGATATCTAACTCACCTTCAAACGCCAGTAGACGATCTAGTAAATCGTAGTGGTCATTTCTCTTCCGGTGACCACCAAGACGATGACGATCCCCATCAAGCCCTTGGTGGCCCGGGGGACGTCGTTGGCCGCCGCCCTCGCGGACGGCCACCCGGTTCGAAAAACAAGCCAAAGCCACCAGTAATCATCACCCGTGAGAGCGCCAACACACTACGTGTCCACATCTTAGAGGTCGGGAGTGGCTGCGACGTTTACGATTGCGTCGCCTCCTATGCCCGCCGGCGACAGCGTGGGATCTGTATTTTGAGTGGCAGCGGTAACGTCACCAACGTTGGCCTCCGCCAGCCAGCGGCGGCAGGGGCGGTGCTGACTCTTCAAGGGAGGTTTGAAATTTTGTCGCTTTCTGGGTCGTTTCTGCCGCCGCCCGCTCCACCTGGCGCCACGAGTTTGACGATATTTTTAGCCGGAGGACAGGGGCAGGTTGTGGGAGGGACGGTGGCCGGGGAATTAACGGCGGCCGGGCCAGTGATTTTGATTGCAGCTTCTTTTACTAATGTGGCGTATGAGAGATTGCCACTGGATGAGGAGGATCAGCAGCAAGCTCCGGCAGGCGGCAGCGGCGGAAGCAGCGGCGGAGTGGGTAATAACAACAACAATCCATTTCAAGACCCATCAAATTCAGGGCTTCCATTCTTGAATTTGCCACTTCATATGCAAAATGTTCAACTTCCACCCTTTTGA 765 55.82 MAGLDLGSRYLTHLQTPVDDLVNRSGHFSSGDHQDDDDPHQALGGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDVYDCVASYARRRQRGICILSGSGNVTNVGLRQPAAAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQAPAGGSGGSSGGVGNNNNNPFQDPSNSGLPFLNLPLHMQNVQLPPF 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3159720 3160484 - CrPI670011_10g004280.1 Cre10g0428 509730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0428 254 MobiDBLite consensus disorder prediction 210 236 - -
Cre10g0428 254 Gene3D - 79 208 - -
Cre10g0428 254 ProSiteProfiles PPC domain profile profile. 76 212 IPR005175 -
Cre10g0428 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 206 - -
Cre10g0428 254 CDD DUF296 80 191 IPR005175 -
Cre10g0428 254 MobiDBLite consensus disorder prediction 205 236 - -
Cre10g0428 254 FunFam AT-hook motif nuclear-localized protein 79 206 - -
Cre10g0428 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 222 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre10g0428 254 PIRSF ESCAROLA 8 250 IPR014476 GO:0003680(InterPro)
Cre10g0428 254 MobiDBLite consensus disorder prediction 22 70 - -
Cre10g0428 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 192 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0345 Cre-Chr5:3171780 Cre10g0428 Cre-Chr10:3159720 4.20E-77 dispersed
Cre09g2174 Cre-Chr9:40811400 Cre10g0428 Cre-Chr10:3159720 5.30E-63 dispersed
Cre10g0428 Cre-Chr10:3159720 Cre11g1150 Cre-Chr11:9130236 1.20E-47 dispersed
Cre10g0427 Cre-Chr10:3144026 Cre10g0428 Cre-Chr10:3159720 1.50E-11 tandem
Cre10g0428 Cre-Chr10:3159720 Cre09g1156 Cre-Chr9:12775472 1.90E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0428 - - - 0.0