Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g0432 ATGGAAGAAAGTAAAAACCATCTTTCTGAACAAAGTACAAAGGGGTTTGCTAAAAACACCAAGGATAAAAAACTAAATGTGTATGTGTGGGACATGGATGAGACCATCATCCTGCTCAAGTCCTTGTTGAATGGGACATATGCTGAGGCTTTTTGTGGTTCAAAGGATGTTAAAAAGGGTGAAGAACTTGGCAAAATTTGGGAGAAGCAGATTCTTGATCTGTGTGATCATCACTTCTACTATGAACAAATAGAAAACTATAATCAGCCATTTCTTGATGCGTTGAGTGAATATGACGATGGTCGCGATCTTTCTAATTATGATTTTGATCAAGATGGTTTTGGTCCACCATGTGATGATGGAAACAAAAGAAAATTGGCTTTTAGGCAACGTGTTATAGCCAATAAGTACAGAGAGGGTCTGCAGAATATCTTTGATCAACAGAAGATGAAGCTCTGGGAAGAGTTATATGAAATGACTGATGTCTATACTGATAGATGGTTTTCCTCAGCACGAGCTTTCTTGGAGGAGTGTTCATTTTCAGATAAACGACCACTTGCATCTGCTGATCAGACACGTAACAGTACTTCTAGAAGTTCTCAGCATGTTAATATCTTAGTGACTTCTGGTGCATTGATACCCAGCCTTGTGAAATGCTTACTATTTCGACTCGATCATCTAATAACACCTGGAAATGTCTACAGTTCATGGGAAGTAGGAAAACTACAATGTTTCCAGTGGATCAAGGAGCGTTTTGACAAGTCAAATGTTCGTTTCTGCGCAATAGGCGATGGATGGGAAGAGTGTGAAGCTGCACAGTCCTTGAAATGGCCATTTGTTAAGATTGATCTGCAACCTGGAAGTCCTCACAGGGCAGAAAATGATATTACAGTGGCATTGACACTGTGTCAACTTTTTGGAGGGAGGGATTTTCCTTTTCAAAGTGGTTCTAATGTCAAAGTACTAGCTCCCATAAACCTACATTTACTGCAAACTGCAGAGGTAAATGCCATTTGCCAAGGTTGTCAAAGCCAAATAGTGTGCTCTGGATGTAAAAATCTGTTGATGTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGTTGTATCTCCTGTGCCAACCTCTGGCTTAACGATGGCTCGGCTGGTATGCAGTGGCTGCCACACCCTGCTCATGTACAGGCGTGGGGCGACAAGTGTACAATGTTCTTGTTGTCGCACTGTAAATGCAGCCTCCAAAGCAAATCAGATGGCTCACATCAACTGTGGGAACTGTAGGGTGCTGCTGATGTGCCAATGTGGGGCACATTCTGTTAAATGTACACTTTGCAATTTTGTGACCTCAGTTGGGATTTTGAGGTTTAATTAG 1377 41.76 MEESKNHLSEQSTKGFAKNTKDKKLNVYVWDMDETIILLKSLLNGTYAEAFCGSKDVKKGEELGKIWEKQILDLCDHHFYYEQIENYNQPFLDALSEYDDGRDLSNYDFDQDGFGPPCDDGNKRKLAFRQRVIANKYREGLQNIFDQQKMKLWEELYEMTDVYTDRWFSSARAFLEECSFSDKRPLASADQTRNSTSRSSQHVNILVTSGALIPSLVKCLLFRLDHLITPGNVYSSWEVGKLQCFQWIKERFDKSNVRFCAIGDGWEECEAAQSLKWPFVKIDLQPGSPHRAENDITVALTLCQLFGGRDFPFQSGSNVKVLAPINLHLLQTAEVNAICQGCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLTMARLVCSGCHTLLMYRRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMCQCGAHSVKCTLCNFVTSVGILRFN 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3223921 3230293 - CrPI670011_10g004320.1 Cre10g0432 509734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g0432 458 Gene3D - 26 290 IPR038102 -
Cre10g0432 458 PANTHER EYES ABSENT 10 285 IPR028472 GO:0004725(InterPro)|GO:0004725(PANTHER)|GO:0005634(PANTHER)|GO:0030154(PANTHER)|GO:0045739(PANTHER)|GO:0048856(PANTHER)
Cre10g0432 458 Pfam LSD1 zinc finger 425 449 IPR005735 -
Cre10g0432 458 Pfam LSD1 zinc finger 387 411 IPR005735 -
Cre10g0432 458 Pfam LSD1 zinc finger 348 372 IPR005735 -
Cre10g0432 458 NCBIfam EYA conserved domain 25 292 IPR006545 GO:0007275(InterPro)
Cre10g0432 458 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 25 285 - -
Cre10g0432 458 FunFam Eyes absent homolog 26 292 - -
Cre10g0432 458 SFLD Haloacid Dehalogenase 25 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0432 Cre-Chr10:3223921 Cre09g1169 Cre-Chr9:13345408 2.50E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54476 PF06943 zf-LSD1 5.10E-10 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g0432 K15616 - csv:101203755 525.398